BAC Information

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BAC

Clone NameB6Ng01-206E12
Chromosome4 (Build37)
Map Location 91,369,717 - 91,443,623
singlet/doubletdoublet
Overlap genenone
Upstream genePpia-ps4_804.1, LOC664840, LOC664848, LOC100042274, Elavl2, LOC664864
Downstream geneLOC620016, LOC654475, 4930577H14Rik, LOC664886, 1700011H22Rik, LOC68280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-206E12.bB6Ng01-206E12.g
ACCGA025737GA025738
length1,1051,180
definitionB6Ng01-206E12.b B6Ng01-206E12.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,369,717 - 91,370,835)(91,442,428 - 91,443,623)
sequence
gaattcacagcatgtaagacctgagctgatttcctatcagaggacatttt
ttttctttatatggctatgtattgtatttttctcgtcagtgcttaaatgt
ttatctctgtaagtcacttctagttatacactgaggaagccagaaaattg
ttccactcacaaacaagcctttacttttaatacatacagcattgaaccag
tgacctttgaaagcagagtggcaggaaccttcaagatcatgcggggccct
tccgctattcagtttgcagtccacctatttgccatttaacaaagacagat
aaattaacatcaaagatctgagcagcaactgagaacaatgcagacaataa
ttgtaagcctagcttagccttaaagcagtagaaatgtctccagggtgtag
ctgtccgtgttcctcagaatgtggtaattgtactcttcaacactgtgctg
aggtgaatatggcaaatgttttttgaagatgatgctggcagtcaggaaga
tctggatgcacttctgtaaagcactgactgatgtatcaggagtaccgaaa
attttgatcttagttatgtttccctcggtaatttgttgttgttgtttgtt
ttgttttgttttacttgtttatttttacctatgtactatttgctttcttc
acccaacgtgagtagtatatcagtcagttgtttttaaggaaaataaaata
gacacatttatattaggtgggtggcttataagattaaacgatatatcctc
caagtctaggcttttctattgctggtgcccaaagattgtttaaaaggtgt
tcaaaaacatactttcaacatgaagcaacctgtattaggatacaaatggg
ttcagatgacctccaagaatcaatcactttaagttggatttctctttttg
ctgtcatagaaagttgtgtgcaatgataaaatttagtactgacaaaggta
tttttagctatctaaatcaattctgcttgtagtcttgagcatggctgtgt
caaggaccttttagtaattggacaataaactggtactggcttttgcatat
gattaacacgctggtacatctactaggtagagattttagatctttggctt
tttta

gaattcacagggacattggcttcctgtacaaaaactgtacaaatcaagcc
attcaatactcaaacatgaatgacaaaaaagtgtacaagctcctctccta
gttgaggaaatagtgacagttcatggttccagggaagggagagccagctt
cctttaggggtattgtttgtagaataaggttgcacatgtgctagccagtg
gttggctctataccttgtatatatgagcaggagtaactgcgctgaagaat
gctatacaaaaactaaaatattaactgaaaattaattggcagaattatat
ggtaaaaggctgtgagaagagttaggaggtagtgagagacaaatatgacc
aaagtaaattgtatacttccctaaactccatcaaaataacatctaagaga
caaagtaatacattttacaagctggaaggcagattgtccagaaaggttgg
tgctaatcaaataatactttagaaatttaaaacttttacaaaggatcaaa
tactaagggattggaaccagaagaaaatgaagtgaaaaaaagccaggtag
aacagggctaggctagaatatgtctaattcctgctaaaggcaaacagctg
atccaatacctagagacagagagtcaggagtatctccaagctgggaaagc
caattccatctcatatgaagtcaggggagttaaataaaaagtgtgcgatg
aattctgagacttttcagacactatatatttcccaaaatcttgagaccag
gcttctagaatctaagatgaaacctaaaaggagcttctgttagaaaccta
aggagattgaaaattactggaaagccttccagattccaacctggcatata
aagaatgtagttgtcaatactgcaccctgagatctaagagaaaagactgg
taaacttttataatgaacaattctttttaaatctgtcaggtaagtggagg
gtatgacccaaatgactgtcttcaaatttgaagaagatagataactgtgt
acaaagaaatcacaacataccacagaagatgttcacattgattgacacca
ggcctgggaagcttgacctggatatgaatggtggatttatgcagaagcat
caagaataatattccagagaactgctttgcagcattctaaccatttcagc
ttatctgaagttcacgtattaattccaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_91369717_91370835
seq2: B6Ng01-206E12.b_43_1147

seq1  GAATTCACAGCATGTAAGACCTGAGCTGATTTCCTATCAGAGGACATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACAGCATGTAAGACCTGAGCTGATTTCCTATCAGAGGACATTTT  50

seq1  TTTTCTTTATATGGCTATGTATTGTATTTTTCTCGTCAGTGCTTAAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTATATGGCTATGTATTGTATTTTTCTCGTCAGTGCTTAAATGT  100

seq1  TTATCTCTGTAAGTCACTTCTAGTTATACACTGAGGAAGCCAGAAAATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCTCTGTAAGTCACTTCTAGTTATACACTGAGGAAGCCAGAAAATTG  150

seq1  TTCCACTCACAAACAAGCCTTTACTTTTAATACATACAGCATTGAACCAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCACTCACAAACAAGCCTTTACTTTTAATACATACAGCATTGAACCAG  200

seq1  TGACCTTTGAAAGCAGAGTGGCAGGAACCTTCAAGATCATGCGGGGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTTGAAAGCAGAGTGGCAGGAACCTTCAAGATCATGCGGGGCCCT  250

seq1  TCCGCTATTCAGTTTGCAGTCCACCTATTTGCCATTTAACAAAGACAGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGCTATTCAGTTTGCAGTCCACCTATTTGCCATTTAACAAAGACAGAT  300

seq1  AAATTAACATCAAAGATCTGAGCAGCAACTGAGAACAATGCAGACAATAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTAACATCAAAGATCTGAGCAGCAACTGAGAACAATGCAGACAATAA  350

seq1  TTGTAAGCCTAGCTTAGCCTTAAAGCAGTAGAAATGTCTCCAGGGTGTAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAGCCTAGCTTAGCCTTAAAGCAGTAGAAATGTCTCCAGGGTGTAG  400

seq1  CTGTCCGTGTTCCTCAGAATGTGGTAATTGTACTCTTCAACACTGTGCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCGTGTTCCTCAGAATGTGGTAATTGTACTCTTCAACACTGTGCTG  450

seq1  AGGTGAATATGGCAAATGTTTTTTGAAGATGATGCTGGCAGTCAGGAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTGAATATGGCAAATGTTTTTTGAAGATGATGCTGGCAGTCAGGAAGA  500

seq1  TCTGGATGCACTTCTGTAAAGCACTGACTGATGTATCAGGAGTACCGAAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGATGCACTTCTGTAAAGCACTGACTGATGTATCAGGAGTACCGAAA  550

seq1  ATTTTGATCTTAGTTATGTTTCCCTCGGTAATTTGTTGTTGTTGTTTGTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGATCTTAGTTATGTTTCCCTCGGTAATTTGTTGTTGTTGTTTGTT  600

seq1  TTGTTTTGTTTTACTTGTTTATTTTTACCTATGTACTATTTGCTTTCTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTGTTTTACTTGTTTATTTTTACCTATGTACTATTTGCTTTCTTC  650

seq1  ACCCAACGTGAGTAGTATATCAGTCAGTTGTTTTTAAGGAAAATAAAATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAACGTGAGTAGTATATCAGTCAGTTGTTTTTAAGGAAAATAAAATA  700

seq1  GACACATTTATATTAGGTGGGTGGCTTATAAGATTAAACGATATATCCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACATTTATATTAGGTGGGTGGCTTATAAGATTAAACGATATATCCTC  750

seq1  CAAGTCTAGGCTTTTCTATTGCTGGTGCCCAAAGATTGTTTAAAAGGTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTCTAGGCTTTTCTATTGCTGGTGCCCAAAGATTGTTTAAAAGGTGT  800

seq1  TCAAAAACATACTTTCAACATGAAGCAACCTGTATTAGGATACAAATGGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAAACATACTTTCAACATGAAGCAACCTGTATTAGGATACAAATGGG  850

seq1  TTCAGATGACCTCCAAGAATCAATCACTTTAAGTTGGATTTCTCTTTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGATGACCTCCAAGAATCAATCACTTTAAGTTGGATTTCTCTTTTTG  900

seq1  CTGTCATAGAAAGTTGTGTGCAATGATAAAATTTAGTACTGACAAAGGTA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCATAGAAAGTTGTGTGCAATGATAAAATTTAGTACTGACAAAGGTA  950

seq1  TTTTTAGCTATCTAAATCAATTCTGCTTGTAGTCTTGAGCATGGCTGTGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTAGCTATCTAAATCAATTCTGCTTGTAGTCTTGAGCATGGCTGTGT  1000

seq1  CAAGGACCTTTTAGGTAATTGGACATAAAACTTGGTACCTGGCTTTTGCA  1050
      ||||||||||||| |||||||||||  |||| ||||| ||||||||||||
seq2  CAAGGACCTTTTA-GTAATTGGACAATAAAC-TGGTA-CTGGCTTTTGCA  1047

seq1  TTATGATTTACACGCTGGTTACATCTTACTTAGGTAAGAGAATTTTAGGA  1100
       ||||||| ||||||||| |||||| ||| ||||| |||| |||||||  
seq2  -TATGATTAACACGCTGG-TACATC-TAC-TAGGT-AGAG-ATTTTAG--  1089

seq1  ATTCCTTTTGGCTTTTTTA  1119
      ||    |||||||||||||
seq2  AT---CTTTGGCTTTTTTA  1105


seq1: chr4_91442428_91443623
seq2: B6Ng01-206E12.g_68_1247 (reverse)

seq1  TTTTGAAATTAAATAACGTGAACACTTCAGATAAAGCTGAGAAATAGGTT  50
      ||||| ||||||   ||||||  ||||||||| |||||  ||||| ||||
seq2  TTTTGGAATTAA--TACGTGA--ACTTCAGAT-AAGCT--GAAAT-GGTT  42

seq1  AG-ATGCTGCAAAAGCCAGTTTCTCTGGAATATTTATCTTTGATGCTTCT  99
      || ||||||||||   ||| |||||||||||| ||||  |||||||||||
seq2  AGAATGCTGCAAA--GCAG-TTCTCTGGAATA-TTATTCTTGATGCTTCT  88

seq1  TGGCAATAAATTCCCACCAATTCATTAATTCCAGGTCAGGCTTCCCA-GC  148
        || ||||||  ||||| ||||||    ||||||||| |||||||| ||
seq2  --GC-ATAAAT--CCACC-ATTCAT---ATCCAGGTCAAGCTTCCCAGGC  129

seq1  CTGGTGTCAATCAATGTGGACATCTTCTGTGGTATGTTGTGA-TTCTTTG  197
      |||||||||||||||||| ||||||||||||||||||||||| |||||||
seq2  CTGGTGTCAATCAATGTGAACATCTTCTGTGGTATGTTGTGATTTCTTTG  179

seq1  TACACAGTTATCTATC-TCTTCAAATTTGAAGACAGTCATTTGGGTCATA  246
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  TACACAGTTATCTATCTTCTTCAAATTTGAAGACAGTCATTTGGGTCATA  229

seq1  -CCTCCACTTACCTGACAGATTTAAAAAGAATTGTTCATTATAAAAGTTT  295
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCACTTACCTGACAGATTTAAAAAGAATTGTTCATTATAAAAGTTT  279

seq1  ACCAGTCTTTTCTCTTAGATCTCAGGGTGCAGTATTGACAACTACATTCT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTCTTTTCTCTTAGATCTCAGGGTGCAGTATTGACAACTACATTCT  329

seq1  TTATATGCCAGGTTGGAATCTGGAAGGCTTTCCAGTAATTTTCAATCTCC  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATGCCAGGTTGGAATCTGGAAGGCTTTCCAGTAATTTTCAATCTCC  379

seq1  TTAGGTTTCTAACAGAAGCTCCTTTTAGGTTTCATCTTAGATTCTAGAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTTTCTAACAGAAGCTCCTTTTAGGTTTCATCTTAGATTCTAGAAG  429

seq1  CCTGGTCTCAAGATTTTGGGAAATATATAGTGTCTGAAAAGTCTCAGAAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGTCTCAAGATTTTGGGAAATATATAGTGTCTGAAAAGTCTCAGAAT  479

seq1  TCATCGCACACTTTTTATTTAACTCCCCTGACTTCATATGAGATGGAATT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATCGCACACTTTTTATTTAACTCCCCTGACTTCATATGAGATGGAATT  529

seq1  GGCTTTCCCAGCTTGGAGATACTCCTGACTCTCTGTCTCTAGGTATTGGA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTCCCAGCTTGGAGATACTCCTGACTCTCTGTCTCTAGGTATTGGA  579

seq1  TCAGCTGTTTGCCTTTAGCAGGAATTAGACATATTCTAGCCTAGCCCTGT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTTTGCCTTTAGCAGGAATTAGACATATTCTAGCCTAGCCCTGT  629

seq1  TCTACCTGGCTTTTTTTCACTTCATTTTCTTCTGGTTCCAATCCCTTAGT  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCTGGCTTTTTTTCACTTCATTTTCTTCTGGTTCCAATCCCTTAGT  679

seq1  ATTTGATCCTTTGTAAAAGTTTTAAATTTCTAAAGTATTATTTGATTAGC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGATCCTTTGTAAAAGTTTTAAATTTCTAAAGTATTATTTGATTAGC  729

seq1  ACCAACCTTTCTGGACAATCTGCCTTCCAGCTTGTAAAATGTATTACTTT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAACCTTTCTGGACAATCTGCCTTCCAGCTTGTAAAATGTATTACTTT  779

seq1  GTCTCTTAGATGTTATTTTGATGGAGTTTAGGGAAGTATACAATTTACTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCTTAGATGTTATTTTGATGGAGTTTAGGGAAGTATACAATTTACTT  829

seq1  TGGTCATATTTGTCTCTCACTACCTCCTAACTCTTCTCACAGCCTTTTAC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCATATTTGTCTCTCACTACCTCCTAACTCTTCTCACAGCCTTTTAC  879

seq1  CATATAATTCTGCCAATTAATTTTCAGTTAATATTTTAGTTTTTGTATAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATAATTCTGCCAATTAATTTTCAGTTAATATTTTAGTTTTTGTATAG  929

seq1  CATTCTTCAGCGCAGTTACTCCTGCTCATATATACAAGGTATAGAGCCAA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTTCAGCGCAGTTACTCCTGCTCATATATACAAGGTATAGAGCCAA  979

seq1  CCACTGGCTAGCACATGTGCAACCTTATTCTACAAACAATACCCCTAAAG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGGCTAGCACATGTGCAACCTTATTCTACAAACAATACCCCTAAAG  1029

seq1  GAAGCTGGCTCTCCCTTCCCTGGAACCATGAACTGTCACTATTTCCTCAA  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGCTGGCTCTCCCTTCCCTGGAACCATGAACTGTCACTATTTCCTCAA  1079

seq1  CTAGGAGAGGAGCTTGTACACTTTTTTGTCATTCATGTTTGAGTATTGAA  1145
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGAGAGGAGCTTGTACACTTTTTTGTCATTCATGTTTGAGTATTGAA  1129

seq1  TGGCTTGATTTGTACAGTTTTTGTACAGGAAGCCAATGTCCCTGTGAATT  1195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTGATTTGTACAGTTTTTGTACAGGAAGCCAATGTCCCTGTGAATT  1179

seq1  C  1196
      |
seq2  C  1180


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