BAC Information

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BAC

Clone NameB6Ng01-207G09
Chromosome4 (Build37)
Map Location 5,118,430 - 5,255,564
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039297, LOC622019, Impad1, LOC100039338
Downstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207G09.bB6Ng01-207G09.g
ACCGA026560GA026561
length1,0231,150
definitionB6Ng01-207G09.b B6Ng01-207G09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(5,118,430 - 5,119,444)(5,254,407 - 5,255,564)
sequence
gaattcatacagttgaatccttcttaacagtctgctttacgggaaccttt
attaccgcgacccgcagttctggttctggaatgagggatcttccttgcgc
cagtcccgagttttttctcgtcccgggtttcagcaccaattgttattaga
cgcgttctcacgcccggccaggaagaacaccacagaccagaatcttctgc
ggcaaaactttattgcttacatcttcaggagcaagagtgtaagaagcaag
agagagaaaacgaaaccccgtccctattaaggagaattatccttcgccta
ggacgtgtcactccctgattggctgcagcccatcggccgagttgacgtca
cggggaaggcagagcacatggagtggagaaccaccctcggcacatgcgca
gattatttgtttaccacttagaacacagctgtcagcgccatcttgtaacg
gcgaatgtgggcgcggctcccaacacatacttaaaaaagaaactttataa
ctatcatcaggggccttggctgtttactgtgatgggcttgaagtatttat
tttctaactttctgttcctgtaaagagtatcttcagatcagatacatcca
gacagtgacaagttttcactatgtgggtttgctatgggcttccttcacca
aagcttccattgtcactgcatgtggggcagttttctttccccatgtatgg
ccctgtcttgctttcatgggaaccttaagcagtggtgccctttaagacca
tgggtttactgtgaacagtagtcagcacttacttaggtcttctttttcct
attctaccttcctcccctgtctcctaaactaggcctttagccccatcagg
ttccattctgaaccacaaaagtcttgggatgcttgtttcctatttggcca
tgctttataatctagctagaccagtaaaccacatttctataacagatgca
cggaaatttaagcacggatttaagcagtaatgagcaatagccattggagt
gtgtggaacaagtgactcttctc

gaattctgtatgtagaccaggttggcctttaatgcccattgtcctcctgc
ctctcccttccaagtgttgagagttcaagcctgtgccaccagacgtaggc
acacatgggaatttgaccatatcttgtggtcactcactatcacatctttg
gcgtcatgcttaacaattaaatactaaattcaaggtcttaggggcacagg
caaatccaggttcaatgtgctgagaggaaaatgaaatatagaggactgag
ttttaaaactaattgtgggcaatggagagccagaattagtcttaggtttt
gatctgaaactgaccatgtaggtgaatttgaactaaagagcttcaaatta
tttaactctgtaattatcacacaggcagaaatacatgtattctttatcag
agaattccttcttgatttttttttcatgagttctcgttggccccattaag
ttcttgtaccatatcctgcttatattctctttaaatctcttgtctttgtc
ttgtagaaggatattattacagaataagaaaagaagatgaagtttggaac
ttaaaaatgtattgtcattttcttctttctctttgaatgttggcttttga
caaaggaagaaaaattaataatacccagccagtagacacttataaacata
aatcacagaagttttgtttattcacttctttcattcatagaacaaatatt
actgaacactctgatgtacacaaatgaagaaatatgccagcttgctctca
acctccgttgctgctgatagacaattcatcagcagatgctttctcacagt
tccctcttctcactatctgaagctgttaagagtctaaaaattactcatcc
tagggtgtgagtgggtgataacagcttgaatttataatccatctcacaag
catgtcgatgtcaaaatgggataaagccagaagcaaaacacaagtcagcc
caggatggcttcagaccttattcaggagaggccacagtgtgcgaagagag
gttgaattagccactcctgaacagaacccatgcatatattcaacattgcc
ttcctgtgcttttttgctgtgcctttcaatgctagctggatgtgtgcatg
catgacagactgcccaattgcttggattgctatgctgatgaacacagtaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_5118430_5119444
seq2: B6Ng01-207G09.b_42_1064

seq1  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATACAGTTGAATCCTTCTTAACAGTCTGCTTTACGGGAACCTTT  50

seq1  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACCGCGACCCGCAGTTCTGGTTCTGGAATGAGGGATCTTCCTTGCGC  100

seq1  CAGTCCCGAGTTTTTTCTCGTCCCGGGTTTCAGCACCAATTGTTATTAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCCCGAGTTTTTTCTCGTCCCGGGTTTCAGCACCAATTGTTATTAGA  150

seq1  CGCGTTCTCACGCCCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCGTTCTCACGCCCGGCCAGGAAGAACACCACAGACCAGAATCTTCTGC  200

seq1  GGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGTAAGAAGCAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAAAACTTTATTGCTTACATCTTCAGGAGCAAGAGTGTAAGAAGCAAG  250

seq1  AGAGAGAAAACGAAACCCCGTCCCTATTAAGGAGAATTATCCTTCGCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAAAACGAAACCCCGTCCCTATTAAGGAGAATTATCCTTCGCCTA  300

seq1  GGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTGTCACTCCCTGATTGGCTGCAGCCCATCGGCCGAGTTGACGTCA  350

seq1  CGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCACATGCGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGGGAAGGCAGAGCACATGGAGTGGAGAACCACCCTCGGCACATGCGCA  400

seq1  GATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAACG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTATTTGTTTACCACTTAGAACACAGCTGTCAGCGCCATCTTGTAACG  450

seq1  GCGAATGTGGGCGCGGCTCCCAACACATACTTAAAAAAGAAACTTTATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGAATGTGGGCGCGGCTCCCAACACATACTTAAAAAAGAAACTTTATAA  500

seq1  CTATCATCAGGGGCCTTGGCTGTTTACTGTGATGGGCTTGAAGTATTTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCATCAGGGGCCTTGGCTGTTTACTGTGATGGGCTTGAAGTATTTAT  550

seq1  TTTCTAACTTTCTGTTCCTGTAAAGAGTATCTTCAGATCAGATACATCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAACTTTCTGTTCCTGTAAAGAGTATCTTCAGATCAGATACATCCA  600

seq1  GACAGTGACAAGTTTTCACTATGTGGGTTTGCTATGGGCTTCCTTCACCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGACAAGTTTTCACTATGTGGGTTTGCTATGGGCTTCCTTCACCA  650

seq1  AAGCTTCCATTGTCACTGCATGTGGGGCAGTTTTCTTTCCCCATGTATGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTCCATTGTCACTGCATGTGGGGCAGTTTTCTTTCCCCATGTATGG  700

seq1  CCCTGTCTTGCTTTCATGGGAACCTTAAGCAGTGGTGCCCTTTAAGACCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTCTTGCTTTCATGGGAACCTTAAGCAGTGGTGCCCTTTAAGACCA  750

seq1  T-GGTTTACTGTGAACAGTAGTCAGCACTTACTTAGGTCTTCTTTTTCCT  799
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTACTGTGAACAGTAGTCAGCACTTACTTAGGTCTTCTTTTTCCT  800

seq1  ATTCTACCTTCCTCCCCTGTCTCCTAAACTA-GCCCTTAGCCCCATCA-G  847
      ||||||||||||||||||||||||||||||| ||| |||||||||||| |
seq2  ATTCTACCTTCCTCCCCTGTCTCCTAAACTAGGCCTTTAGCCCCATCAGG  850

seq1  TTCCA-TCTGAA-CACAAAAGTTCTTGGATGCTTGTTTCCTATTT-GCCA  894
      ||||| |||||| |||||||||  | ||||||||||||||||||| ||||
seq2  TTCCATTCTGAACCACAAAAGTCTTGGGATGCTTGTTTCCTATTTGGCCA  900

seq1  TGCTTTATAATCTAGCTAGAACAAGTAAA-CACA-TTCTATAACAGGATG  942
      ||||||||||||||||||| || |||||| |||| |||||||||| ||||
seq2  TGCTTTATAATCTAGCTAG-ACCAGTAAACCACATTTCTATAACA-GATG  948

seq1  CACGGAAATTT-AGCAGTGGATTTTAGCAGTAATGAGGCAATAGCAAT--  989
      ||||||||||| ||||  |||||| ||||||||||| |||||||| ||  
seq2  CACGGAAATTTAAGCA-CGGATTTAAGCAGTAATGA-GCAATAGCCATTG  996

seq1  GAGT-TGTGGAACAAGTGACTCTTCTC  1015
      |||| ||||||||||||||||||||||
seq2  GAGTGTGTGGAACAAGTGACTCTTCTC  1023


seq1: chr4_5254407_5255564
seq2: B6Ng01-207G09.g_58_1207 (reverse)

seq1  TTACTGGTGGTCATCCAGCATTTGAGCAATCCAAGCAATTTGTGCAGACC  50
      ||||| ||| |||| ||||||   |||||||||||||| ||| ||||  |
seq2  TTACT-GTGTTCAT-CAGCAT---AGCAATCCAAGCAA-TTGGGCAG-TC  43

seq1  TGTCACTCCAATCCACACATTACAGCTAGCACTGAAAAGCACAGGAAAAA  100
      |||||  |  || |||||| | ||||||||| ||||| |||||| |||||
seq2  TGTCATGC--ATGCACACA-TCCAGCTAGCATTGAAAGGCACAGCAAAAA  90

seq1  AGCACAGGAAAGCAATGGTG-ATATATGCATGTG-TCTG-TCAGGGGT-G  146
      |||||||||| |||||| || ||||||||||| | |||| ||||| || |
seq2  AGCACAGGAAGGCAATGTTGAATATATGCATGGGTTCTGTTCAGGAGTGG  140

seq1  CT-ATTCAACCTCTCCTTCGCACACTGTGGCCTCTCCTG-ATAAGGTCTG  194
      || ||||||||||| |||||||||||||||||||||||| ||||||||||
seq2  CTAATTCAACCTCT-CTTCGCACACTGTGGCCTCTCCTGAATAAGGTCTG  189

seq1  AAGCCATCCTGGGCTGACTTTGGTGTTTTTGCTTCTGGCTTTTATCCATT  244
      ||||||||||||||||||||  ||| ||||||||||||||||   |||||
seq2  AAGCCATCCTGGGCTGACTT--GTG-TTTTGCTTCTGGCTTTATCCCATT  236

seq1  TTGACATCGACATGCTTGTGAGATGGATTATAAATTCAAGCTGTTATCAC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACATCGACATGCTTGTGAGATGGATTATAAATTCAAGCTGTTATCAC  286

seq1  CCACTCACACCCTAGGATGAGTAATTTTTAGACTCTTAACAGCTTCAGAT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTCACACCCTAGGATGAGTAATTTTTAGACTCTTAACAGCTTCAGAT  336

seq1  AGTGAGAAGAGGGAACTGTGAGAAAGCATCTGCTGATGAATTGTCTATCA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGAAGAGGGAACTGTGAGAAAGCATCTGCTGATGAATTGTCTATCA  386

seq1  GCAGCAACGGAGGTTGAGAGCAAGCTGGCATATTTCTTCATTTGTGTACA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGCAACGGAGGTTGAGAGCAAGCTGGCATATTTCTTCATTTGTGTACA  436

seq1  TCAGAGTGTTCAGTAATATTTGTTCTATGAATGAAAGAAGTGAATAAACA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAGTGTTCAGTAATATTTGTTCTATGAATGAAAGAAGTGAATAAACA  486

seq1  AAACTTCTGTGATTTATGTTTATAAGTGTCTACTGGCTGGGTATTATTAA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACTTCTGTGATTTATGTTTATAAGTGTCTACTGGCTGGGTATTATTAA  536

seq1  TTTTTCTTCCTTTGTCAAAAGCCAACATTCAAAGAGAAAGAAGAAAATGA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTTCCTTTGTCAAAAGCCAACATTCAAAGAGAAAGAAGAAAATGA  586

seq1  CAATACATTTTTAAGTTCCAAACTTCATCTTCTTTTCTTATTCTGTAATA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATACATTTTTAAGTTCCAAACTTCATCTTCTTTTCTTATTCTGTAATA  636

seq1  ATATCCTTCTACAAGACAAAGACAAGAGATTTAAAGAGAATATAAGCAGG  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCTTCTACAAGACAAAGACAAGAGATTTAAAGAGAATATAAGCAGG  686

seq1  ATATGGTACAAGAACTTAATGGGGCCAACGAGAACTCATGAAAAAAAAAT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTACAAGAACTTAATGGGGCCAACGAGAACTCATGAAAAAAAAAT  736

seq1  CAAGAAGGAATTCTCTGATAAAGAATACATGTATTTCTGCCTGTGTGATA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAGGAATTCTCTGATAAAGAATACATGTATTTCTGCCTGTGTGATA  786

seq1  ATTACAGAGTTAAATAATTTGAAGCTCTTTAGTTCAAATTCACCTACATG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTACAGAGTTAAATAATTTGAAGCTCTTTAGTTCAAATTCACCTACATG  836

seq1  GTCAGTTTCAGATCAAAACCTAAGACTAATTCTGGCTCTCCATTGCCCAC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTTCAGATCAAAACCTAAGACTAATTCTGGCTCTCCATTGCCCAC  886

seq1  AATTAGTTTTAAAACTCAGTCCTCTATATTTCATTTTCCTCTCAGCACAT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAGTTTTAAAACTCAGTCCTCTATATTTCATTTTCCTCTCAGCACAT  936

seq1  TGAACCTGGATTTGCCTGTGCCCCTAAGACCTTGAATTTAGTATTTAATT  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACCTGGATTTGCCTGTGCCCCTAAGACCTTGAATTTAGTATTTAATT  986

seq1  GTTAAGCATGACGCCAAAGATGTGATAGTGAGTGACCACAAGATATGGTC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGCATGACGCCAAAGATGTGATAGTGAGTGACCACAAGATATGGTC  1036

seq1  AAATTCCCATGTGTGCCTACGTCTGGTGGCACAGGCTTGAACTCTCAACA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCCCATGTGTGCCTACGTCTGGTGGCACAGGCTTGAACTCTCAACA  1086

seq1  CTTGGAAGGGAGAGGCAGGAGGACAATGGGCATTAAAGGCCAACCTGGTC  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAAGGGAGAGGCAGGAGGACAATGGGCATTAAAGGCCAACCTGGTC  1136

seq1  TACATACAGAATTC  1158
      ||||||||||||||
seq2  TACATACAGAATTC  1150


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