BAC Information

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BAC

Clone NameB6Ng01-207H02
Chromosome4 (Build37)
Map Location 115,527,326 - 115,687,841
singlet/doubletdoublet
Overlap geneMknk1, Kncn, 6430628N08Rik, Dmbx1, Faah
Upstream geneFoxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c
Downstream geneNsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207H02.bB6Ng01-207H02.g
ACCGA026592GA026593
length1,1941,141
definitionB6Ng01-207H02.b B6Ng01-207H02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,527,326 - 115,528,459)(115,686,710 - 115,687,841)
sequence
cctcagtggttaggaagaacgccgcgaaaatttcctccggagtatataac
gggatttatagccctttatatgatggtggggcttccctgagggtgcattt
gtccaggggactgaattaaggtctctgataaaactagagtgtggtccgcc
tcatcccagcaacctcccccaccccatacctcttgctatgagaacagaga
gagttcatgctgctttcgtttcacggtttccctacatttttccttcctag
ttccaaaaacaactctccctcaacaagttctgtttacaaggaaaccttac
ccatttgtcctttctggcgcgccttcttccactgagatccatgcagaaca
gaccaggtactctgtctttgtgtgtgaagccataaaatctaatattgagt
atgtggctctgcccaagggtatgctgcttccacgggaggctccacagccc
tgctgtggtaaagagcacctataaactgctgctaacagggttttctgtcc
agagctgtaagtatgtctgcgagtcccctgtgggtcacaatgctgccagc
tctcctgctgttctccacactgcctgcctgtgggttgtttggtttgtccg
caggctcctaatcagagggtggccaggggagggtgaaggagcagaaacca
catctgttcactccactctgggtttgcagcgctggttaggaaacagttgg
gacgagggctgacactagactgcacgccagagggaggacagtccagtcat
gtcccaacccatcctgaccccctcccccaaaccttaaaagacgaatgacc
ttgtgctttgaagaatttctcccagtgacctgtaaatgcatctggatggc
atttttctttgtgatttacctttagtgtgggtgcttcagtagcaggattt
catccctttgagagttgtagggctttctcgtctccaggtagacccttgtg
cttgaagctgttggcaggagtaatgttttttaggtactctatggattctt
tttatctgggtgttttttctctctgttctgggtttgtagttgaaaacctg
ctgtgatcagatccccaccgtgcagagggatgcatctagcagctgtcaga
tgcttgctgctagctgtgctttctggagtgtggggttgatgtgccactct
gccatgctctgctacgctgccaagtgctgctctgtggccagcat
gaattctcctgccgggccctggcttccttggagaagaaaggcggcacctg
aggctgcctctgacgtctctcttctaatgccttctcagcccatccctgaa
tagcaaggggcacctggggagatcggacccagtgttctgggaggacaaag
cagtctggttcctctgataggtactatacaaagttagctgtgtgccaagt
ctggttcctctgataggtactatacaaagttagctgtgtgccaaggtaga
cacaggctagatggcaagtaggacatgagcatctctgagtcacaatggtt
tacacaatggtttacttttccagactctggagcagctctagggagaggtg
tatttctggttactgtagaacaatggaagtctatcaacaacaacctttct
cctactttccccagatacccaccaagtgagctttaaaaaaaaaatactac
ttttaaagttttttttttatttgtatgaatgttttgcctacatgtatgtt
tgtgcaccatgtgcatgcctggtacctacagagaccaaaggggcatgaaa
tcccctgtaaatgcagttatagaaggttatgagataccatgtgggattgt
gggaaccgaacccaggtcctctggaatagcagacagtactacaaacttct
aagccatctctccagcccccccccccattgtttctacactgcagacaaga
accacaagacatagactgttagctggaagagatgtcacaggacatgattc
ctgccccagggcctttgcacatgtggttttgtttgaactgtctcatgcct
tctctttggtaaaagtttactgatcctacaaatgactctcccttcaccgg
atccattgcggctctgtctctggcccgtctccaagccttttctggtacgt
ttcttttgaaacgattcctaatgggtgaattgaaagcatgggttgcacca
ttaagaattatcttcacatcgttgtgagcaagcgagaacagctgaaaaca
gaatcaaaaaagataaaaccagagttctgaattaagacactagatgtttc
atgagatgtagaaacagttggatagagagaagccattgctgataagatgg
gtgccagcaagctcattctaagcatgtctcctaactgggtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115527326_115528459
seq2: B6Ng01-207H02.b_70_1194

seq1  ATGATGGTGGGGCTTCCCTGAGGGTGCATTTGTCCAGGGGACTGAATTAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATGGTGGGGCTTCCCTGAGGGTGCATTTGTCCAGGGGACTGAATTAA  50

seq1  GGTCTCTGATAAAACTAGAGTGTGGTCCGCCTCATCCCAGCAACCTCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTCTGATAAAACTAGAGTGTGGTCCGCCTCATCCCAGCAACCTCCCC  100

seq1  CACCCCATACCTCTTGCTATGAGAACAGAGAGAGTTCATGCTGCTTTCGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCATACCTCTTGCTATGAGAACAGAGAGAGTTCATGCTGCTTTCGT  150

seq1  TTCACGGTTTCCCTACATTTTTCCTTCCTAGTTCCAAAAACAACTCTCCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACGGTTTCCCTACATTTTTCCTTCCTAGTTCCAAAAACAACTCTCCC  200

seq1  TCAACAAGTTCTGTTTACAAGGAAACCTTACCCATTTGTCCTTTCTGGCG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACAAGTTCTGTTTACAAGGAAACCTTACCCATTTGTCCTTTCTGGCG  250

seq1  CGCCTTCTTCCACTGAGATCCATGCAGAACAGACCAGGTACTCTGTCTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCTTCTTCCACTGAGATCCATGCAGAACAGACCAGGTACTCTGTCTTT  300

seq1  GTGTGTGAAGCCATAAAATCTAATATTGAGTATGTGGCTCTGCCCAAGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGAAGCCATAAAATCTAATATTGAGTATGTGGCTCTGCCCAAGGG  350

seq1  TATGCTGCTTCCACGGGAGGCTCCACAGCCCTGCTGTGGTAAAGAGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCTGCTTCCACGGGAGGCTCCACAGCCCTGCTGTGGTAAAGAGCACC  400

seq1  TATAAACTGCTGCTAACAGGGTTTTCTGTCCAGAGCTGTAAGTATGTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACTGCTGCTAACAGGGTTTTCTGTCCAGAGCTGTAAGTATGTCTG  450

seq1  CGAGTCCCCTGTGGGTCACAATGCTGCCAGCTCTCCTGCTGTTCTCCACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTCCCCTGTGGGTCACAATGCTGCCAGCTCTCCTGCTGTTCTCCACA  500

seq1  CTGCCTGCCTGTGGGTTGTTTGGTTTGTCCGCAGGCTCCTAATCAGAGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCTGCCTGTGGGTTGTTTGGTTTGTCCGCAGGCTCCTAATCAGAGGG  550

seq1  TGGCCAGGGGAGGGTGAAGGAGCAGAAACCACATCTGTTCACTCCACTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCAGGGGAGGGTGAAGGAGCAGAAACCACATCTGTTCACTCCACTCT  600

seq1  GGGTTTGCAGCGCTGGTTAGGAAACAGTTGGGACGAGGGCTGACACTAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGCAGCGCTGGTTAGGAAACAGTTGGGACGAGGGCTGACACTAGA  650

seq1  CTGCACGCCAGAGGGAGGACAGTCCAGTCATGTCCCAACCCATCCTGACC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCACGCCAGAGGGAGGACAGTCCAGTCATGTCCCAACCCATCCTGACC  700

seq1  CCCTCCCCCAAACCTTAAAAGACGAATGACCTTGTGCTTTGAAGAATTTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCCCCCAAACCTTAAAAGACGAATGACCTTGTGCTTTGAAGAATTTC  750

seq1  TCCCAGTGACCTGTAAATGCATCTGGATGGCATTTTTCTTTGTGATTTAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCAGTGACCTGTAAATGCATCTGGATGGCATTTTTCTTTGTGATTTAC  800

seq1  C-TTAGTGTGGGTGCTTCAGTAGCAGGATTTCAT-CCTTTGAGAGTTGTA  848
      | |||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CTTTAGTGTGGGTGCTTCAGTAGCAGGATTTCATCCCTTTGAGAGTTGTA  850

seq1  GGGCTTTCTCGTCTCCAGGTAGA-CCTTGTGCTTGAAGCTGTTGGCAGGA  897
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  GGGCTTTCTCGTCTCCAGGTAGACCCTTGTGCTTGAAGCTGTTGGCAGGA  900

seq1  GTAATG-TTTTTAGGTACTCTATGGATTCTTTTTATCTGGGTGTTTTTTC  946
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTAATGTTTTTTAGGTACTCTATGGATTCTTTTTATCTGGGTGTTTTTTC  950

seq1  TTCTCTGTTCTGGG-TTGTAGTTGAAAACCTGCTGTGATCAGATCCCCAC  995
       ||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  -TCTCTGTTCTGGGTTTGTAGTTGAAAACCTGCTGTGATCAGATCCCCAC  999

seq1  CGTGGAAGGAGGGATGCATCTAAGCAGGGCTGTCAGATGCTTGGCTGCTT  1045
      |||| |  ||||||||||||| ||||  |||||||||||||| ||||| |
seq2  CGTGCA--GAGGGATGCATCT-AGCA--GCTGTCAGATGCTT-GCTGC-T  1042

seq1  AGCTGTGCTTTCTGGAGTGTGGTGTTGAATGTGCCATTCTG-CATGCTTC  1094
      |||||||||||||||||||||| |||| |||||||| |||| ||||||  
seq2  AGCTGTGCTTTCTGGAGTGTGGGGTTG-ATGTGCCACTCTGCCATGCT--  1089

seq1  CTGCTAACAGCTGCCAAGTGCCTGCCTCTGTGGGCAGCAT  1134
      ||||||   ||||||||||| ||| |||||||| ||||||
seq2  CTGCTA--CGCTGCCAAGTG-CTG-CTCTGTGGCCAGCAT  1125

seq1: chr4_115686710_115687841
seq2: B6Ng01-207H02.g_64_1204 (reverse)

seq1  CACCCAGTATGGAGACATGCTTAAAGAATGAGC-TGCT-GCACCCATCTT  48
      ||||||||  ||||||||||||  ||||||||| |||| |||||||||||
seq2  CACCCAGTTAGGAGACATGCTT--AGAATGAGCTTGCTGGCACCCATCTT  48

seq1  TTCAGCACT-GCTCCTCTCT---CAACTGTTTCTCCCTCTCCTGAACCAT  94
       |||||| | ||| ||||||   ||||||||||| | |||| |||| |||
seq2  ATCAGCAATGGCTTCTCTCTATCCAACTGTTTCTACATCTCATGAAACAT  98

seq1  CTAGTGTCCTAATTTCAG-ACTCTTGGGTTTTTATCTTTTTTG-TTCTGT  142
      |||||||| ||| ||||| |||||   | |||||||||||||| ||||||
seq2  CTAGTGTCTTAA-TTCAGAACTCT---GGTTTTATCTTTTTTGATTCTGT  144

seq1  TTTCAGCTGTCTCCGCTTGCTCACAACGATGGTGAAGAT-ATTCTTAATG  191
      ||||||||||   ||||||||||||||||| |||||||| ||||||||||
seq2  TTTCAGCTGTTCTCGCTTGCTCACAACGAT-GTGAAGATAATTCTTAATG  193

seq1  GTGCAA-CCATGCTTTCAATTCACCAAT--AGAATCGTTTC-AAAGAAAC  237
      |||||| |||||||||||||||||| ||   |||||||||| ||||||||
seq2  GTGCAACCCATGCTTTCAATTCACCCATTAGGAATCGTTTCAAAAGAAAC  243

seq1  GTACCAG-AAAGGCTTGGAGACGGGCCAGAGACAGAGCCGCAATGGATCC  286
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCAGAAAAGGCTTGGAGACGGGCCAGAGACAGAGCCGCAATGGATCC  293

seq1  GGTGAAGGGAGAGTCATTTGTAGGATCAGTAAACTTTTACC-AAGAGAAG  335
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  GGTGAAGGGAGAGTCATTTGTAGGATCAGTAAACTTTTACCAAAGAGAAG  343

seq1  GCATGAGACAGTTC-AACAAAACCACATGTGCAAAGGCCCTGGGGCAGGA  384
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GCATGAGACAGTTCAAACAAAACCACATGTGCAAAGGCCCTGGGGCAGGA  393

seq1  ATCATGTCCTGTGACATCTCTTCCAGCTAACAGTCTATGTCTTGTGGTTC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGTCCTGTGACATCTCTTCCAGCTAACAGTCTATGTCTTGTGGTTC  443

seq1  TTGTCTGCAGTGTAGAAACAATGGGGGGGGGGGCTGGAGAGATGGCTTAG  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCTGCAGTGTAGAAACAATGGGGGGGGGGGCTGGAGAGATGGCTTAG  493

seq1  AAGTTTGTAGTACTGTCTGCTATTCCAGAGGACCTGGGTTCGGTTCCCAC  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTTGTAGTACTGTCTGCTATTCCAGAGGACCTGGGTTCGGTTCCCAC  543

seq1  AATCCCACATGGTATCTCATAACCTTCTATAACTGCATTTACAGGGGATT  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCACATGGTATCTCATAACCTTCTATAACTGCATTTACAGGGGATT  593

seq1  TCATGCCCCTTTGGTCTCTGTAGGTACCAGGCATGCACATGGTGCACAAA  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGCCCCTTTGGTCTCTGTAGGTACCAGGCATGCACATGGTGCACAAA  643

seq1  CATACATGTAGGCAAAACATTCATACAAATAAAAAAAAAACTTTAAAAGT  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACATGTAGGCAAAACATTCATACAAATAAAAAAAAAACTTTAAAAGT  693

seq1  AGTATTTTTTTTTTAAAGCTCACTTGGTGGGTATCTGGGGAAAGTAGGAG  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTTTTTTTTTAAAGCTCACTTGGTGGGTATCTGGGGAAAGTAGGAG  743

seq1  AAAGGTTGTTGTTGATAGACTTCCATTGTTCTACAGTAACCAGAAATACA  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGTTGTTGTTGATAGACTTCCATTGTTCTACAGTAACCAGAAATACA  793

seq1  CCTCTCCCTAGAGCTGCTCCAGAGTCTGGAAAAGTAAACCATTGTGTAAA  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCCCTAGAGCTGCTCCAGAGTCTGGAAAAGTAAACCATTGTGTAAA  843

seq1  CCATTGTGACTCAGAGATGCTCATGTCCTACTTGCCATCTAGCCTGTGTC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTGACTCAGAGATGCTCATGTCCTACTTGCCATCTAGCCTGTGTC  893

seq1  TACCTTGGCACACAGCTAACTTTGTATAGTACCTATCAGAGGAACCAGAC  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTGGCACACAGCTAACTTTGTATAGTACCTATCAGAGGAACCAGAC  943

seq1  TTGGCACACAGCTAACTTTGTATAGTACCTATCAGAGGAACCAGACTGCT  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCACACAGCTAACTTTGTATAGTACCTATCAGAGGAACCAGACTGCT  993

seq1  TTGTCCTCCCAGAACACTGGGTCCGATCTCCCCAGGTGCCCCTTGCTATT  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCCTCCCAGAACACTGGGTCCGATCTCCCCAGGTGCCCCTTGCTATT  1043

seq1  CAGGGATGGGCTGAGAAGGCATTAGAAGAGAGACGTCAGAGGCAGCCTCA  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATGGGCTGAGAAGGCATTAGAAGAGAGACGTCAGAGGCAGCCTCA  1093

seq1  GGTGCCGCCTTTCTTCTCCAAGGAAGCCAGGGCCCGGCAGGAGAATTC  1132
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCGCCTTTCTTCTCCAAGGAAGCCAGGGCCCGGCAGGAGAATTC  1141