BAC Information

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BAC

Clone NameB6Ng01-207K05
Chromosome4 (Build37)
Map Location 110,619,170 - 110,655,548
singlet/doubletdoublet
Overlap genenone
Upstream geneFaf1, Dmrta2, Elavl4
Downstream geneLOC100040381, 2310026E23Rik, Spata6, LOC621612, Slc5a9, LOC639774, C130057D23Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207K05.bB6Ng01-207K05.g
ACCGA026732GA026733
length1,0671,133
definitionB6Ng01-207K05.b B6Ng01-207K05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(110,619,170 - 110,620,240)(110,654,412 - 110,655,548)
sequence
gaattcctagaatagttcaaattcattataatttatctccttctcctcca
atggattaaagttgccaatttggaatattgtgaaagagagcaacttagct
cctcccccttttttgcaaagccttttcagatttcattgtcaaagttatgc
aattgtgtagcacaaattagaaagtgttttctcactttcaggtatctaca
gcattctacacagtattggtgtcacattgttgggcaaatccccgggtaaa
actcgccatactttaaattttctatacgtggaagtcgttaatataatcaa
ttgcctttatatatttaatagaactatgtttgtttagtatatcttctgcc
aactttagaaacaaaagatttttgtattaataggcatttcctctttcatt
ataattatggaaactaattgttgtagtattattttaattattttcatcac
tcagtgtgtgtgtgtgtgtgtgtgtgtgtctaagtgtaagagttggctct
gaagatctaacttgcatctcatagttcactgctggtgtcattagcactta
tccatctttctgggcaacctttaaaatttttgtgtaatttcctagccttg
tgacgtacactaatatctattttaaattttgatacacctttttattccta
atatatgtcgtattatgttattctattatttttaatccatgaagaagttt
actgctggataatatttaggaataggtaatgtctagaaaatttcaaccat
ggcttatcacttgttctttttttgtaagttcctgcctgttttgcttcaag
attgtaagagccttacactgtgaattgaatagatctctacctttttaatt
ttctttcatctcatgaaccattaacataatttttaagttcaagtactact
acaaatgtttccccaaacatgccatcacttttggtccctgctttctaaag
caaggatctgcaattgcttctttgaagaaaagagagtaatgatttattac
tttgagaactattagatttctgcagactgtcagctctgctgccactgttg
taaaagtggcataacca

gaattcccaaggtgaaagtgaccttgactatagtttagaaacaagaaaac
caaagcttaggaaaagtgagtagcagttacctctttgtaggacatatgga
gagctagaagtgaagcccaggttcaggggataatagagtccttacctttt
aattttcagaattttttgggcaaataatcagtaaaagcagtctaaggatg
ccaaacatcttcaatctcatcatatttctagtcttaatatatagtgagat
cagatgcaaagtactgaaagcctgacaaagcaagtgcctataatacttaa
cttgaacaaatgtttataataaaaagatcaaggcacacaaagatatagat
attgggaaattatataaaactgcttttatctgttatgagctacactgaag
atttaataatgtggtctataattatgccagttgaagctgttatggaaggc
aggccaagtctcatctcctttttttctctatctctggaggtggcctgaac
cattatctgtgttaataatggtaagtctctatatctttccctaatatttt
ctcttgatttatatagatatagatacaaatgtcagctggactcttacctg
gatagtccactgattcttctgtaaagaatggacatatcacacccttgcct
cattttaaagctgtatctcctttacattacttattaatttttcttgtctc
tgtaaatagatctatcctttgctagagttccaaaaataatctataatacc
gggagctgaggagttagctctgtaaattaagtgtttgattctcaagcata
agaacctgacttcaactctagcacccacatgaaaagctcactgtgctggt
gcatgtttgtaatgctagatggagatgctgatgcagaaggatccttaggg
tcactgggccagttagccagcctaattggtaagctctaggtcccagtgag
aaatgcagtctcggagaacaagccctgggaaacggattcaagggcaggca
tgtaagtcccctttagagttccaaatgaagacactactgcacactggtac
gatgtagacggcccaggtcattccaggcatgctctctgatggtcagttca
gtctctctatgagcctgtaagtcagttggttga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_110619170_110620240
seq2: B6Ng01-207K05.b_47_1113

seq1  GAATTCCTAGAATAGTTCAAATTCATTATAATTTATCTCCTTCTCCTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTAGAATAGTTCAAATTCATTATAATTTATCTCCTTCTCCTCCA  50

seq1  ATGGATTAAAGTTGCCAATTTGGAATATTGTGAAAGAGAGCAACTTAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGATTAAAGTTGCCAATTTGGAATATTGTGAAAGAGAGCAACTTAGCT  100

seq1  CCTCCCCCTTTTTTGCAAAGCCTTTTCAGATTTCATTGTCAAAGTTATGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCCCCCTTTTTTGCAAAGCCTTTTCAGATTTCATTGTCAAAGTTATGC  150

seq1  AATTGTGTAGCACAAATTAGAAAGTGTTTTCTCACTTTCAGGTATCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGTGTAGCACAAATTAGAAAGTGTTTTCTCACTTTCAGGTATCTACA  200

seq1  GCATTCTACACAGTATTGGTGTCACATTGTTGGGCAAATCCCCGGGTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTCTACACAGTATTGGTGTCACATTGTTGGGCAAATCCCCGGGTAAA  250

seq1  ACTCGCCATACTTTAAATTTTCTATACGTGGAAGTCGTTAATATAATCAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGCCATACTTTAAATTTTCTATACGTGGAAGTCGTTAATATAATCAA  300

seq1  TTGCCTTTATATATTTAATAGAACTATGTTTGTTTAGTATATCTTCTGCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTATATATTTAATAGAACTATGTTTGTTTAGTATATCTTCTGCC  350

seq1  AACTTTAGAAACAAAAGATTTTTGTATTAATAGGCATTTCCTCTTTCATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTAGAAACAAAAGATTTTTGTATTAATAGGCATTTCCTCTTTCATT  400

seq1  ATAATTATGGAAACTAATTGTTGTAGTATTATTTTAATTATTTTCATCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTATGGAAACTAATTGTTGTAGTATTATTTTAATTATTTTCATCAC  450

seq1  TCAGTGTGTGTGTGTGTGTGTGTGTGTGTCTAAGTGTAAGAGTTGGCTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTGTGTGTGTGTGTGTGTGTGTGTGTCTAAGTGTAAGAGTTGGCTCT  500

seq1  GAAGATCTAACTTGCATCTCATAGTTCACTGCTGGTGTCATTAGCACTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATCTAACTTGCATCTCATAGTTCACTGCTGGTGTCATTAGCACTTA  550

seq1  TCCATCTTTCTGGGCAACCTTTAAAATTTTTGTGTAATTTCCTAGCCTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCTTTCTGGGCAACCTTTAAAATTTTTGTGTAATTTCCTAGCCTTG  600

seq1  TGACGTACACTAATATCTATTTTAAATTTTGATACACCTTTTTATTCCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACGTACACTAATATCTATTTTAAATTTTGATACACCTTTTTATTCCTA  650

seq1  ATATATGTCGTATTATGTTATTCTATTATTTTTAATCCATGAAGAAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTCGTATTATGTTATTCTATTATTTTTAATCCATGAAGAAGTTT  700

seq1  ACTGCTGGATAATATTTAGGAATAGGTAATGTCTAGAAAATTTCAACCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTGGATAATATTTAGGAATAGGTAATGTCTAGAAAATTTCAACCAT  750

seq1  GGCTTATCACTTGTTCTTTTTTTGTAAGTTCCTGCCTGTTTTGCTTCAAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTATCACTTGTTCTTTTTTTGTAAGTTCCTGCCTGTTTTGCTTCAAG  800

seq1  ATTGTAAGAGCCTTACACTGTGAATTGAATAGATCTCTACCTTTTTAATT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAAGAGCCTTACACTGTGAATTGAATAGATCTCTACCTTTTTAATT  850

seq1  TTCTTTCATCTCATGAACCATTAACATAATTTTTAAGTTCAAGTACTACT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCATCTCATGAACCATTAACATAATTTTTAAGTTCAAGTACTACT  900

seq1  ACAAATGTTTCCCCAAACATGCCATCACTTTTGGTCCCTGCTTTCTAAAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTTTCCCCAAACATGCCATCACTTTTGGTCCCTGCTTTCTAAAG  950

seq1  CAAGGATCTGCAAATTGCTTCTTTGAAGAAAAAGAGAGTAAATGATTTA-  999
      ||||||||||| |||||||||||||||| |||||||||| ||||||||| 
seq2  CAAGGATCTGC-AATTGCTTCTTTGAAG-AAAAGAGAGT-AATGATTTAT  997

seq1  TACTTTGAGAACTATTAGATTTCTGCAGAACTGTTCAGCTCTGCTGCCAC  1049
      |||||||||||||||||||||||||||| |||| ||||||||||||||||
seq2  TACTTTGAGAACTATTAGATTTCTGCAG-ACTG-TCAGCTCTGCTGCCAC  1045

seq1  TGTTGTAAAAGTGGCATAACCA  1071
      ||||||||||||||||||||||
seq2  TGTTGTAAAAGTGGCATAACCA  1067


seq1: chr4_110654412_110655548
seq2: B6Ng01-207K05.g_62_1194 (reverse)

seq1  TCAACCAACCTGGGCCCTTACAGGCTCAT--AGAGACTGAACTGACAACC  48
      |||||||| |||    |||||||||||||  ||||||||||||||| | |
seq2  TCAACCAA-CTG---ACTTACAGGCTCATAGAGAGACTGAACTGACCATC  46

seq1  AGAGAGCATGCCTGGGATTGACCTGGGGCGTCTACATCGTACCAGTGGTG  98
      ||||||||||||| ||| ||||||||| |||||||||||||||||| |||
seq2  AGAGAGCATGCCT-GGAATGACCTGGGCCGTCTACATCGTACCAGT-GTG  94

seq1  CAGGTAGTGTCTTCATTTGGAACTCCTAAAGGGGACTTACATTGCCTGCC  148
      || ||||||||||||||||||||| |||||||||||||||| ||||||||
seq2  CA-GTAGTGTCTTCATTTGGAACT-CTAAAGGGGACTTACA-TGCCTGCC  141

seq1  TTTGAATCCGTTTCC--AGGCTTGTTCTCCGAGACTGCATTTCTCACTGG  196
       ||||||||||||||   ||||||||||||||||||||||||||||||||
seq2  CTTGAATCCGTTTCCCAGGGCTTGTTCTCCGAGACTGCATTTCTCACTGG  191

seq1  GACCTAGAGCTTACCAATTAGGCTGGCTAACTGG-CCAGTGACCCTAAGG  245
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GACCTAGAGCTTACCAATTAGGCTGGCTAACTGGCCCAGTGACCCTAAGG  241

seq1  ATCCTTCTGCCTCAGCATCTCCATCTAGCATTACAAACATGCACCAGCAC  295
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTCTGCATCAGCATCTCCATCTAGCATTACAAACATGCACCAGCAC  291

seq1  AGTGAGCTTTTCATGTGGGTGCTAGAGTTGAAGTCAGGTTCTTATGCTTG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGCTTTTCATGTGGGTGCTAGAGTTGAAGTCAGGTTCTTATGCTTG  341

seq1  AGAATCAAACACTTAATTTACAGAGCTAACTCCTCAGCTCCCGGTATTAT  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCAAACACTTAATTTACAGAGCTAACTCCTCAGCTCCCGGTATTAT  391

seq1  AGATTATTTTTGGAACTCTAGCAAAGGATAGATCTATTTACAGAGACAAG  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTATTTTTGGAACTCTAGCAAAGGATAGATCTATTTACAGAGACAAG  441

seq1  AAAAATTAATAAGTAATGTAAAGGAGATACAGCTTTAAAATGAGGCAAGG  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATTAATAAGTAATGTAAAGGAGATACAGCTTTAAAATGAGGCAAGG  491

seq1  GTGTGATATGTCCATTCTTTACAGAAGAATCAGTGGACTATCCAGGTAAG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGATATGTCCATTCTTTACAGAAGAATCAGTGGACTATCCAGGTAAG  541

seq1  AGTCCAGCTGACATTTGTATCTATATCTATATAAATCAAGAGAAAATATT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAGCTGACATTTGTATCTATATCTATATAAATCAAGAGAAAATATT  591

seq1  AGGGAAAGATATAGAGACTTACCATTATTAACACAGATAATGGTTCAGGC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAGATATAGAGACTTACCATTATTAACACAGATAATGGTTCAGGC  641

seq1  CACCTCCAGAGATAGAGAAAAAAAGGAGATGAGACTTGGCCTGCCTTCCA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCCAGAGATAGAGAAAAAAAGGAGATGAGACTTGGCCTGCCTTCCA  691

seq1  TAACAGCTTCAACTGGCATAATTATAGACCACATTATTAAATCTTCAGTG  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCTTCAACTGGCATAATTATAGACCACATTATTAAATCTTCAGTG  741

seq1  TAGCTCATAACAGATAAAAGCAGTTTTATATAATTTCCCAATATCTATAT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTCATAACAGATAAAAGCAGTTTTATATAATTTCCCAATATCTATAT  791

seq1  CTTTGTGTGCCTTGATCTTTTTATTATAAACATTTGTTCAAGTTAAGTAT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTGTGCCTTGATCTTTTTATTATAAACATTTGTTCAAGTTAAGTAT  841

seq1  TATAGGCACTTGCTTTGTCAGGCTTTCAGTACTTTGCATCTGATCTCACT  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGCACTTGCTTTGTCAGGCTTTCAGTACTTTGCATCTGATCTCACT  891

seq1  ATATATTAAGACTAGAAATATGATGAGATTGAAGATGTTTGGCATCCTTA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATTAAGACTAGAAATATGATGAGATTGAAGATGTTTGGCATCCTTA  941

seq1  GACTGCTTTTACTGATTATTTGCCCAAAAAATTCTGAAAATTAAAAGGTA  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGCTTTTACTGATTATTTGCCCAAAAAATTCTGAAAATTAAAAGGTA  991

seq1  AGGACTCTATTATCCCCTGAACCTGGGCTTCACTTCTAGCTCTCCATATG  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACTCTATTATCCCCTGAACCTGGGCTTCACTTCTAGCTCTCCATATG  1041

seq1  TCCTACAAAGAGGTAACTGCTACTCACTTTTCCTAAGCTTTGGTTTTCTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTACAAAGAGGTAACTGCTACTCACTTTTCCTAAGCTTTGGTTTTCTT  1091

seq1  GTTTCTAAACTATAGTCAAGGTCACTTTCACCTTGGGAATTC  1137
      ||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTAAACTATAGTCAAGGTCACTTTCACCTTGGGAATTC  1133


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