BAC Information

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BAC

Clone NameB6Ng01-207L05
Chromosome4 (Build37)
Map Location 114,796,823 - 114,924,807
singlet/doubletdoublet
Overlap geneCyp4x1, Cyp4a21-ps, LOC384042, LOC230639
Upstream geneA630098G03Rik, LOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1
Downstream geneCyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4, Uqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207L05.bB6Ng01-207L05.g
ACCGA026779GA026780
length1,1541,084
definitionB6Ng01-207L05.b B6Ng01-207L05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,923,622 - 114,924,807)(114,796,823 - 114,797,895)
sequence
gaattcacttccattggttatgggtgttaaagagcctgagggttgaatga
tcattgtgtaaatgaatatgttttctaagggataaatcaccatagaatta
ttccacatattcaatctagtgtaaagaatgcttttaggagtatacagcta
agaaagaagaggtctctttgtgctatcagggatcattgtaggatgttgaa
ctttaaaaatgtcagtggttaagagtgctgtttacgggctggtgagatgg
ctcagtgggttagagcacccgactgctcttccgaaggtccagagttcaaa
tcccagcaaccacatggtggctcacaaccatccgtaacgagatctgactc
cctcttctggtgtatctgaagacagctacagtgtacttacatataataaa
taaataaatcttaaaaaaaaaaaaaaagagtgctgtttacttttccagag
ggcttgggttcagttttcagcatccatatggcatctgacagcagtttata
ttttcagtgtcagaacatccaaaaatcactactggtcctcattggcactc
caaacatgttgtattcagacataacatgcaggaaaaacacctatccacat
taagaaaaataaagaaagaaatttaattatatctcagagggaaaaaaatc
atggaatctgaataaaggaaccttgttgtcacgaaagtgtggattctaaa
ccatgaaagtgtggctattgaaaagtaataatacgattctaattaaatac
aaaaatgcatgtcatttttttccatgacatctgcacagatttacttacaa
ggagaagaagagttaatgaattcagaactcgaaagcacacaaaaagatcc
gatttttctttctccccagaaaactcaagtcattgaaagtaagtgctcat
acctttaggtaaggaacgtccatcaggaaggtgacaggtgtgctaagctt
tctgcacagatggtattgggtggggtagagctcagggctcctgatgcaca
tggtggcatagggcatcttggtgcaggtggtccctgaaatgagcccatct
agagatagctgagcctaagagagctgagactccttacaagacagtgtttt
ctgagttccactcaccaggtgggggatcatccgaagcctgactcttctct
gcat
gaattcaggaaaggtttacctagacatccttactcactgggtacttgcat
tctgattagtttctagaaatcagctttgatttttcccaatccactatata
aactaatatagtgtttcacttaccagcatcactttcacagagtgggccat
cgtgtccacacatggttttaggatgtcctgatggaatgcaggagttagga
ggcagcggtgttggaaccacctgggcccatctaaattcaggagtcctcgt
ccttgaggaagaaaatgcacatagcctcatgcattttattgggttaggag
agatgaggaacacaggtggcctgatgtcaccgactcacgagcagacatga
agtagcagtgactatcaagaagctgacagatggggacggtcagctctgat
gctcacaccagagttaatgcatttagtgctgtgagaaagtgaaggctttg
aggcctgataagccttagcttcacagtgacggagtgtggtattctgtact
atattccatgaaggcacacatacaaaacacccaaccttaagaaaagactt
taagtttgaataacatcctttaaatttttttattaggagagatggctcag
cagttaaaagcactggctattcttccagaggtcctgagttcaattctcag
caaccacatggtggcttgtaagcatttgtaatgatgtctgatgccctctt
ctggtgtatcttaaaatagcaacaatgtgtactcagacataaaataaata
attcttaaaattttttaacatttttcatacaatgtatttttataatattt
ttggcttccccaaacttctcctgatcctccctctctgaccactcaacttc
atgttttttctcctttctctcaaaaacagaaaaacatcaaaaacaaagaa
tcaaaatcaaatagacaaacagaggaattaaattaggacgaacccaactg
aacaagtgcacaataaaacatgggagttctatttttggtgttgaccaact
actcctgaagaggtggggccttgccccttgttattgcggatgatcccacc
acagtggacacctcctacttggaaaacaccgatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_114923622_114924807
seq2: B6Ng01-207L05.b_41_1194 (reverse)

seq1  ATGCAGAGAAGAGGTCCAGAGCCTTCTTGGGGATGGATCCCCCATCACAT  50
      |||||||||||| |||   || ||||    |||| |||||||   ||| |
seq2  ATGCAGAGAAGA-GTC---AGGCTTC----GGAT-GATCCCC---CACCT  38

seq1  GGTGAGTGGGAACTCAAGAAAAAAAAAACACTGTCTTGTAATAGGGAGTC  100
      ||||||| |||||||       | |||||||||||||||||   ||||||
seq2  GGTGAGT-GGAACTC-------AGAAAACACTGTCTTGTAA---GGAGTC  77

seq1  TCTGCTTCTCTTAGGCTCAGCTTATTCTTCTAGATGGGCTTCATTTCAGG  150
      || || ||||||||||||||| |||   ||||||||||| ||||||||||
seq2  TCAGC-TCTCTTAGGCTCAGC-TAT--CTCTAGATGGGC-TCATTTCAGG  122

seq1  GACCACCTGCACC-AGATGCCCTATACCACCATGTGCATCAAGGAGGCCC  199
      ||||||||||||| ||||||||||| |||||||||||||| |||| ||||
seq2  GACCACCTGCACCAAGATGCCCTATGCCACCATGTGCATC-AGGA-GCCC  170

seq1  TGAGGCTCTACCC--ACCAATACCATCTGTTGGCAGAAAGCTTAGCACAC  247
      ||| |||||||||   ||||||||||||||  ||||||||||||||||||
seq2  TGA-GCTCTACCCCACCCAATACCATCTGT--GCAGAAAGCTTAGCACAC  217

seq1  CTGTCACCTTCCCTGATGGACGTTCCTTACCTAAAGGTATGAGCACTTAC  297
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  CTGTCACCTT-CCTGATGGACGTTCCTTACCTAAAGGTATGAGCACTTAC  266

seq1  TTTCAATGACTTGAGTTTTCTGGGGAGAAAGAAAAATCGGATCTTTTTGT  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATGACTTGAGTTTTCTGGGGAGAAAGAAAAATCGGATCTTTTTGT  316

seq1  GTGCTTTTCGAGTTCTGAATTCATTAACTCTTCTTCTCCTTGTAAGTAAA  397
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGC-TTTCGAGTTCTGAATTCATTAACTCTTCTTCTCCTTGTAAGTAAA  365

seq1  TCTGTGCAGATGTCATGGAAAAAAATGACATGCATTTTTGTATTTAATTA  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCAGATGTCATGGAAAAAAATGACATGCATTTTTGTATTTAATTA  415

seq1  GAATCGTATTATTACTTTTCAATAGCCACACTTTCATGGTTTAGAATCCA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATCGTATTATTACTTTTCAATAGCCACACTTTCATGGTTTAGAATCCA  465

seq1  CACTTTCGTGACAACAAGGTTCCTTTATTCAGATTCCATGATTTTTTTCC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTCGTGACAACAAGGTTCCTTTATTCAGATTCCATGATTTTTTTCC  515

seq1  CTCTGAGATATAATTAAATTTCTTTCTTTATTTTTCTTAATGTGGATAGG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGAGATATAATTAAATTTCTTTCTTTATTTTTCTTAATGTGGATAGG  565

seq1  TGTTTTTCCTGCATGTTATGTCTGAATACAACATGTTTGGAGTGCCAATG  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTCCTGCATGTTATGTCTGAATACAACATGTTTGGAGTGCCAATG  615

seq1  AGGACCAGTAGTGATTTTTGGATGTTCTGACACTGAAAATATAAACTGCT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACCAGTAGTGATTTTTGGATGTTCTGACACTGAAAATATAAACTGCT  665

seq1  GTCAGATGCCATATGGATGCTGAAAACTGAACCCAAGCCCTCTGGAAAAG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGATGCCATATGGATGCTGAAAACTGAACCCAAGCCCTCTGGAAAAG  715

seq1  TAAACAGCACTCTTTTTTTTTTTTTTTAAGATTTATTTATTTATTATATG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGCACTCTTTTTTTTTTTTTTTAAGATTTATTTATTTATTATATG  765

seq1  TAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGAGTCAGATCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGAGTCAGATCT  815

seq1  CGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTG  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTACGGATGGTTGTGAGCCACCATGTGGTTGCTGGGATTTGAACTCTG  865

seq1  GACCTTCGGAAGAGCAGTCGGGTGCTCTAACCCACTGAGCCATCTCACCA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCTTCGGAAGAGCAGTCGGGTGCTCTAACCCACTGAGCCATCTCACCA  915

seq1  GCCCGTAAACAGCACTCTTAACCACTGACATTTTTAAAGTTCAACATCCT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCGTAAACAGCACTCTTAACCACTGACATTTTTAAAGTTCAACATCCT  965

seq1  ACAATGATCCCTGATAGCACAAAGAGACCTCTTCTTTCTTAGCTGTATAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATGATCCCTGATAGCACAAAGAGACCTCTTCTTTCTTAGCTGTATAC  1015

seq1  TCCTAAAAGCATTCTTTACACTAGATTGAATATGTGGAATAATTCTATGG  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAAAAGCATTCTTTACACTAGATTGAATATGTGGAATAATTCTATGG  1065

seq1  TGATTTATCCCTTAGAAAACATATTCATTTACACAATGATCATTCAACCC  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTATCCCTTAGAAAACATATTCATTTACACAATGATCATTCAACCC  1115

seq1  TCAGGCTCTTTAACACCCATAACCAATGGAAGTGAATTC  1186
      |||||||||||||||||||||||||||||||||||||||
seq2  TCAGGCTCTTTAACACCCATAACCAATGGAAGTGAATTC  1154

seq1: chr4_114796823_114797895
seq2: B6Ng01-207L05.g_62_1145

seq1  GAATTCAGGAAAGGTTTACCTAGACATCCTTACTCACTGGGTACTTGCAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGAAAGGTTTACCTAGACATCCTTACTCACTGGGTACTTGCAT  50

seq1  TCTGATTAGTTTCTAGAAATCAGCTTTGATTTTTCCCAATCCACTATATA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATTAGTTTCTAGAAATCAGCTTTGATTTTTCCCAATCCACTATATA  100

seq1  AACTAATATAGTGTTTCACTTACCAGCATCACTTTCACAGAGTGGGCCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAATATAGTGTTTCACTTACCAGCATCACTTTCACAGAGTGGGCCAT  150

seq1  CGTGTCCACACATGGTTTTAGGATGTCCTGATGGAATGCAGGAGTTAGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGTCCACACATGGTTTTAGGATGTCCTGATGGAATGCAGGAGTTAGGA  200

seq1  GGCAGCGGTGTTGGAACCACCTGGGCCCATCTAAATTCAGGAGTCCTCGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCGGTGTTGGAACCACCTGGGCCCATCTAAATTCAGGAGTCCTCGT  250

seq1  CCTTGAGGAAGAAAATGCACATAGCCTCATGCATTTTATTGGGTTAGGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTGAGGAAGAAAATGCACATAGCCTCATGCATTTTATTGGGTTAGGAG  300

seq1  AGATGAGGAACACAGGTGGCCTGATGTCACCGACTCACGAGCAGACATGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGGAACACAGGTGGCCTGATGTCACCGACTCACGAGCAGACATGA  350

seq1  AGTAGCAGTGACTATCAAGAAGCTGACAGATGGGGACGGTCAGCTCTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAGCAGTGACTATCAAGAAGCTGACAGATGGGGACGGTCAGCTCTGAT  400

seq1  GCTCACACCAGAGTTAATGCATTTAGTGCTGTGAGAAAGTGAAGGCTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACACCAGAGTTAATGCATTTAGTGCTGTGAGAAAGTGAAGGCTTTG  450

seq1  AGGCCTGATAAGCCTTAGCTTCACAGTGACGGAGTGTGGTATTCTGTACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTGATAAGCCTTAGCTTCACAGTGACGGAGTGTGGTATTCTGTACT  500

seq1  ATATTCCATGAAGGCACACATACAAAACACCCAACCTTAAGAAAAGACTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTCCATGAAGGCACACATACAAAACACCCAACCTTAAGAAAAGACTT  550

seq1  TAAGTTTGAATAACATCCTTTAAATTTTTTTATTAGGAGAGATGGCTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTTTGAATAACATCCTTTAAATTTTTTTATTAGGAGAGATGGCTCAG  600

seq1  CAGTTAAAAGCACTGGCTATTCTTCCAGAGGTCCTGAGTTCAATTCTCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTAAAAGCACTGGCTATTCTTCCAGAGGTCCTGAGTTCAATTCTCAG  650

seq1  CAACCACATGGTGGCTTGTAAGCATTTGTAATGATGTCTGATGCCCTCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCACATGGTGGCTTGTAAGCATTTGTAATGATGTCTGATGCCCTCTT  700

seq1  CTGGTGTATCTTAAAATAGCAACAATGTGTACTCAGACATAAAATAAATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGTATCTTAAAATAGCAACAATGTGTACTCAGACATAAAATAAATA  750

seq1  ATTCTTAAAATTTTTTAACATTTTTCATACAATGTATTTTTATAATATTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTAAAATTTTTTAACATTTTTCATACAATGTATTTTTATAATATTT  800

seq1  TTGGCTTCCCCAAACTTCTCCTGATCCTCCCTCTCTGACCACTCAACTTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTTCCCCAAACTTCTCCTGATCCTCCCTCTCTGACCACTCAACTTC  850

seq1  ATGTTTTTTCTCCTTTCTCTCAAAAACAGAAAAACATCAAAAAACAAAGA  900
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  ATGTTTTTTCTCCTTTCTCTCAAAAACAGAAAAACATC-AAAAACAAAGA  899

seq1  ATCAAAATCAAAATAGACAAACAAGAGGAATTAAA-TAAGACGAAACCAA  949
      ||||||||| |||||||||||| |||||||||||| || |||| |||| |
seq2  ATCAAAATC-AAATAGACAAAC-AGAGGAATTAAATTAGGACG-AACCCA  946

seq1  ACTGAAACAAAGTGCACAATAAAACAT-GGAG-TCTATTTT--GTGTTGA  995
      ||||||   |||||||||||||||||| |||| ||||||||  |||||||
seq2  ACTGAA--CAAGTGCACAATAAAACATGGGAGTTCTATTTTTGGTGTTGA  994

seq1  CCAACTACTCCTG-AGAG--TGGGCCCTGCCC--TG-TAATGCGGTTGAT  1039
      ||||||||||||| ||||   ||||| |||||  || || ||||| ||||
seq2  CCAACTACTCCTGAAGAGGTGGGGCCTTGCCCCTTGTTATTGCGGATGAT  1044

seq1  CC--ACACAGT-GACA-CTCC-AC-TGGAAAACACCGATT  1073
      ||   |||||| |||| |||| || |||||||||||||||
seq2  CCCACCACAGTGGACACCTCCTACTTGGAAAACACCGATT  1084