BAC Information

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BAC

Clone NameB6Ng01-207N16
Chromosome4 (Build37)
Map Location 102,542,851 - 102,665,470
singlet/doubletdoublet
Overlap geneSgip1, Tctex1d1
Upstream geneLOC665362, C130073F10Rik, LOC384033, LOC381535, LOC332923, LOC100039834, LOC381536, LOC433739, Pde4b
Downstream geneInsl5, Wdr78, Mier1, Slc35d1, 4921539E11Rik, 4930456L15Rik, Oma1, LOC665451, LOC100039940, EG665460, LOC622315
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-207N16.bB6Ng01-207N16.g
ACCGA026892GA026893
length1,128797
definitionB6Ng01-207N16.b B6Ng01-207N16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(102,664,364 - 102,665,470)(102,542,851 - 102,543,647)
sequence
gaattcaatcccatattatacacctttgtggtatccagagattcatttga
gatttaggtagccctgacttgttttgttttaaaggaagtaagtattgctt
cattgtttttgttttttgttttcaaagcaacactgtaactctgtaattgg
cctcccactttctttctcaaattaaggtcccttgtctaggactggagaca
atgacaggctacagctaagcccacattggtcactgaagtcaaggttttga
gcatgtggatgaatgacaaagcagcgcacctaactggtaggtgttttcca
tccggactgtgaggcgagaggattcatcacgctggctgggctcatccgcg
tgggacacggtactgagggaactaagaccgaaggagtaaacattagtgat
tagccacaagatctacaaaacattgctttaagcaagtgcatttatacatg
aaaaatctactgtaaggaagtttctaatgaaccctataagtggcccaatg
gcttatttaaagcctgaaacactttagagatgggactactgagctgtaga
gaagttactagcagagtctcagggtcatgtggaagtcagagcaggtgcta
acctgagtctatgggatagtgcagtgagtgtttcaaaagccattgtcaat
ggagtcctctaacaaaacacaaaagcatcccccacagtaaacaaagctca
caaatggggtttgggggtgtataaagcagcttaatgtgttgggaaacaaa
tccatacagacaaagggtattataaaaagatcaccatggtaagttccacc
aaatcccttcagaataaaaaaagaaatgagacactcacctctctacgtgg
tgagagaaaccgcaagtccacctaaactctaagaagtcaatcagtgcggg
cccaccttttttcttagcattgaaaaggattggttcttcagggcaatctg
atcctgatccaggtgtggaacaagaaaacccaaagcaaggagagccccct
gatggggctctggtgtggtaaatcaacccagcttcagcaaaaacccaagt
tggggaactagtgagctacaaaccattcctacctcaaaattcctccatct
gtgaagaatggaagttaaagaatagatg
gaattcttatctgtgagctaggtgtgatacacaaacttcaacacacacac
acacacacacacacacacacacacacacacacaaatgtaggattttgact
aatgcccctcagcgttcacagtccttggtaagcttctgaggagagtgaac
ctaaccttgtcccccctcagttttgttggttttgctttgttttcctgcca
cctgaggttacttttgctttgccgatgggtagtcgtccttttcttgccct
cacccatacctcccagcagaagaaagagctaagtgtctttaactgtgttc
tacctaccaaaggaaagcacttttattcctcaagtgaatctgaagaggaa
gaagagtcgcacaagaaattcaacatcaagattaaacccttgcaatctaa
ggacgtcctgaagaatgcagcgacggtagatgagctgaaggcttcaatag
gcaacatcgcactttccccttcgcctgtggtgagtgaagtctcatgttaa
gctttggtaaggcagggcagagagctatgttctgccacatgtgctaagaa
tgacatgtgtccaatctgatgaactctgcagccctcgagtaacctgctct
tcacctcttatattgcaattcctatgcctttcaaaccagcaaaggcgcat
gaaactgtgttttcttttattttctaataagcatcaaacaaaggaaaaat
aacaaaaagattttccaaacttaccaatgatggagaattattttatatat
atatatatatatatatatatatatatatatatatatatgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_102664364_102665470
seq2: B6Ng01-207N16.b_46_1173 (reverse)

seq1  CATCTAT--CTTAACCTCCA-TCTTCACAGATGGAGGGAATTTGGGGTA-  46
      |||||||   ||||| |||| |||||||||||||||| | |||| |||| 
seq2  CATCTATTCTTTAACTTCCATTCTTCACAGATGGAGGAATTTTGAGGTAG  50

seq1  GAATG--TTGTAGCTCACTAGT---CCCACTT-GGTTTTTGCTG-AGCTG  89
      |||||  |||||||||||||||   || |||| ||||||||||| |||||
seq2  GAATGGTTTGTAGCTCACTAGTTCCCCAACTTGGGTTTTTGCTGAAGCTG  100

seq1  GGTTGAATTA-CACA-CAGAG-CCCATCAGGGGCTCCTCCTTGCTT--GG  134
      |||||| ||| |||| ||||| |||||||||||   ||||||||||  ||
seq2  GGTTGATTTACCACACCAGAGCCCCATCAGGGGGCTCTCCTTGCTTTGGG  150

seq1  GTTTCTTGTTCCACACCTGGATCA-GATCAGATTGCCCTGAAG-ACCAAT  182
       ||||||||||||||||||||||| |||||||||||||||||| ||||||
seq2  TTTTCTTGTTCCACACCTGGATCAGGATCAGATTGCCCTGAAGAACCAAT  200

seq1  CCTTTTCAATGCTAAG-AAAAAGGT-GGCCCGCACTGATTGACTTCTTAG  230
      |||||||||||||||| |||||||| ||||||||||||||||||||||||
seq2  CCTTTTCAATGCTAAGAAAAAAGGTGGGCCCGCACTGATTGACTTCTTAG  250

seq1  AGTTTAGGT-GACTTGCGGTTTCTCTCACCACGTAGAGAGGTGAGTGTCT  279
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGGTGGACTTGCGGTTTCTCTCACCACGTAGAGAGGTGAGTGTCT  300

seq1  CATTTCTTTTTTTATTCTGAAGGGATTTGGTGGAACTTACCATGGTGATC  329
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTCTTTTTTTATTCTGAAGGGATTTGGTGGAACTTACCATGGTGATC  350

seq1  TTTTTATAATACCCTTTGTCTGTATGGATTTGTTTCCCAACACATTAAGC  379
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATAATACCCTTTGTCTGTATGGATTTGTTTCCCAACACATTAAGC  400

seq1  TGCTTTATACACCCCCAAACCCCATTTGTGAGCTTTGTTTACTGTGGGGG  429
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTATACACCCCCAAACCCCATTTGTGAGCTTTGTTTACTGTGGGGG  450

seq1  ATGCTTTTGTGTTTTGTTAGAGGACTCCATTGACAATGGCTTTTGAAACA  479
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTTGTGTTTTGTTAGAGGACTCCATTGACAATGGCTTTTGAAACA  500

seq1  CTCACTGCACTATCCCATAGACTCAGGTTAGCACCTGCTCTGACTTCCAC  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACTGCACTATCCCATAGACTCAGGTTAGCACCTGCTCTGACTTCCAC  550

seq1  ATGACCCTGAGACTCTGCTAGTAACTTCTCTACAGCTCAGTAGTCCCATC  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCTGAGACTCTGCTAGTAACTTCTCTACAGCTCAGTAGTCCCATC  600

seq1  TCTAAAGTGTTTCAGGCTTTAAATAAGCCATTGGGCCACTTATAGGGTTC  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAGTGTTTCAGGCTTTAAATAAGCCATTGGGCCACTTATAGGGTTC  650

seq1  ATTAGAAACTTCCTTACAGTAGATTTTTCATGTATAAATGCACTTGCTTA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGAAACTTCCTTACAGTAGATTTTTCATGTATAAATGCACTTGCTTA  700

seq1  AAGCAATGTTTTGTAGATCTTGTGGCTAATCACTAATGTTTACTCCTTCG  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAATGTTTTGTAGATCTTGTGGCTAATCACTAATGTTTACTCCTTCG  750

seq1  GTCTTAGTTCCCTCAGTACCGTGTCCCACGCGGATGAGCCCAGCCAGCGT  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTAGTTCCCTCAGTACCGTGTCCCACGCGGATGAGCCCAGCCAGCGT  800

seq1  GATGAATCCTCTCGCCTCACAGTCCGGATGGAAAACACCTACCAGTTAGG  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATCCTCTCGCCTCACAGTCCGGATGGAAAACACCTACCAGTTAGG  850

seq1  TGCGCTGCTTTGTCATTCATCCACATGCTCAAAACCTTGACTTCAGTGAC  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTGCTTTGTCATTCATCCACATGCTCAAAACCTTGACTTCAGTGAC  900

seq1  CAATGTGGGCTTAGCTGTAGCCTGTCATTGTCTCCAGTCCTAGACAAGGG  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGTGGGCTTAGCTGTAGCCTGTCATTGTCTCCAGTCCTAGACAAGGG  950

seq1  ACCTTAATTTGAGAAAGAAAGTGGGAGGCCAATTACAGAGTTACAGTGTT  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTAATTTGAGAAAGAAAGTGGGAGGCCAATTACAGAGTTACAGTGTT  1000

seq1  GCTTTGAAAACAAAAAACAAAAACAATGAAGCAATACTTACTTCCTTTAA  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGAAAACAAAAAACAAAAACAATGAAGCAATACTTACTTCCTTTAA  1050

seq1  AACAAAACAAGTCAGGGCTACCTAAATCTCAAATGAATCTCTGGATACCA  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAACAAGTCAGGGCTACCTAAATCTCAAATGAATCTCTGGATACCA  1100

seq1  CAAAGGTGTATAATATGGGATTGAATTC  1107
      ||||||||||||||||||||||||||||
seq2  CAAAGGTGTATAATATGGGATTGAATTC  1128

seq1: chr4_102542851_102543647
seq2: B6Ng01-207N16.g_68_864

seq1  GAATTCTTATCTGTGAGCTAGGTGTGATACACAAACTTCAACACACACAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTATCTGTGAGCTAGGTGTGATACACAAACTTCAACACACACAC  50

seq1  ACACACACACACACACACACACACACACACACAAATGTAGGATTTTGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACACACACACACACACACACACACACAAATGTAGGATTTTGACT  100

seq1  AATGCCCCTCAGCGTTCACAGTCCTTGGTAAGCTTCTGAGGAGAGTGAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCCCTCAGCGTTCACAGTCCTTGGTAAGCTTCTGAGGAGAGTGAAC  150

seq1  CTAACCTTGTCCCCCCTCAGTTTTGTTGGTTTTGCTTTGTTTTCCTGCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACCTTGTCCCCCCTCAGTTTTGTTGGTTTTGCTTTGTTTTCCTGCCA  200

seq1  CCTGAGGTTACTTTTGCTTTGCCGATGGGTAGTCGTCCTTTTCTTGCCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGGTTACTTTTGCTTTGCCGATGGGTAGTCGTCCTTTTCTTGCCCT  250

seq1  CACCCATACCTCCCAGCAGAAGAAAGAGCTAAGTGTCTTTAACTGTGTTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCATACCTCCCAGCAGAAGAAAGAGCTAAGTGTCTTTAACTGTGTTC  300

seq1  TACCTACCAAAGGAAAGCACTTTTATTCCTCAAGTGAATCTGAAGAGGAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTACCAAAGGAAAGCACTTTTATTCCTCAAGTGAATCTGAAGAGGAA  350

seq1  GAAGAGTCGCACAAGAAATTCAACATCAAGATTAAACCCTTGCAATCTAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGTCGCACAAGAAATTCAACATCAAGATTAAACCCTTGCAATCTAA  400

seq1  GGACGTCCTGAAGAATGCAGCGACGGTAGATGAGCTGAAGGCTTCAATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTCCTGAAGAATGCAGCGACGGTAGATGAGCTGAAGGCTTCAATAG  450

seq1  GCAACATCGCACTTTCCCCTTCGCCTGTGGTGAGTGAAGTCTCATGTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAACATCGCACTTTCCCCTTCGCCTGTGGTGAGTGAAGTCTCATGTTAA  500

seq1  GCTTTGGTAAGGCAGGGCAGAGAGCTATGTTCTGCCACATGTGCTAAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTGGTAAGGCAGGGCAGAGAGCTATGTTCTGCCACATGTGCTAAGAA  550

seq1  TGACATGTGTCCAATCTGATGAACTCTGCAGCCCTCGAGTAACCTGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATGTGTCCAATCTGATGAACTCTGCAGCCCTCGAGTAACCTGCTCT  600

seq1  TCACCTCTTATATTGCAATTCCTATGCCTTTCAAACCAGCAAAGGCGCAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCTCTTATATTGCAATTCCTATGCCTTTCAAACCAGCAAAGGCGCAT  650

seq1  GAAACTGTGTTTTCTTTTATTTTCTAATAAGCATCAAACAAAGGAAAAAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACTGTGTTTTCTTTTATTTTCTAATAAGCATCAAACAAAGGAAAAAT  700

seq1  AACAAAAAGATTTTCCAAACTTACCAATGATGGAGAATTATTTTATATAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAAAAGATTTTCCAAACTTACCAATGATGGAGAATTATTTTATATAT  750

seq1  ATATATATATATATATATATATATATATATATATATATGTGTGTGTG  797
      |||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATATATATATATATATATATATATATGTGTGTGTG  797