BAC Information

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BAC

Clone NameB6Ng01-208A16
Chromosome4 (Build37)
Map Location 99,926,415 - 99,927,464
singlet/doubletsinglet
Overlap geneRor1
Upstream geneAtg4c, LOC665212, LOC638890, LOC100042589, Foxd3, Alg6, Itgb3bp, BC020077, Pgm2
Downstream geneUbe2u, LOC277707, LOC621573, Cachd1, LOC100039747, Raver2, Jak1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208A16.bB6Ng01-208A16.g
ACCGA027029GA027030
length1,0531,187
definitionB6Ng01-208A16.b B6Ng01-208A16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcctgtccctcacaagttattcacgttgcaagcgcgcgctgctt
tcttcttagcatttgcacttcagttttgagaatatcagccttgtctgggg
aggcagacccatgatgccagcaagtctcccatcctcccgctcacattttc
tcaaaggcacagaagggtgagtgaggatccttacccatccttacatccta
ttctgctctagtcccccctgagggtctaaaggtcaaaggctgcctggcag
gaatttgacagcacacagatgcatgtcttcacgatatacccaccacacaa
gtctgtcaggctcactattcattaggtcatcactcttgctagactccagg
gttttgtgatttgctctgacgggccttctgtcacaaagctttccagagta
ccctgagccttttcatggctggaaggaattctgtggtagcacgtattgag
ttttctttgctcattttctcattgattgacatagactagactacttatgg
ttatgcaagtatagcagggaatatcccatattcccgcccatgttttgttt
cctcatctgtgcaaatccctttgctcatcactgaacatgccatcaagcag
ccgtatgccagttaagaactttctcatgaatgccactgctgctgtctggc
cctctctcatacctgcaagtcttcctgttttgacaacagatcccagagtt
tatagttttagaagaaggaacagcaataatagcaggagaagctcacattt
cccaggacatatatttttttttcttctcttaccctgagtcccaagggaaa
gaaacatattttcagacagagtaaatatttcttataaacccaaatatagt
agctcccacaatttaacgttttgttcttttacataggaaaggttgggatg
cagggatcagtgtgggactctggggtatctgtgagatttgggggatgttc
ttgcctttctgcttcatctgcatccagtgtagttttcactcttcgggtta
ccataatgtctgccagtactatcagcatcccagccatgggaagggagaaa
tgg
gaattcaggtaatgagcaaggctaatctataaaatggatgtatttgtttt
ctgaacagtagtcactttcccatggattccagcacagtagtcaggactgt
gtccccaggacagtggctactgcatgctgtgccattgtaaccaactaaat
gagtgacacagaaatgataggaaagaaatggctattgcatgggaatcttc
atatagagcccactattgctctgagaatatgcatgaataccagccccctc
tctttccttcactcttgtagtagtattaagtaaaaactgagtatggcatg
acattaattactataatgcatgcaaaccagctaaccagaatccaggattt
taaaagcatcaaaccttgattctcaccaccccaagtctatgacatgaact
gacctctaaggcatttacatttatatttcctttttaaaatcactggtaga
ctagctgagactcctacctgtggaggatatggagactgaagtggccacct
cctgtagtcaggcaggatttccagagaagggaggggacatcaacctaccc
acaaaaaccttcaacctgaaatttgtcctgcctacaagatgtgcaggaat
aaagatggtgcagagaattagggaacagccaaccaatgactgccccaatt
tgagacccatttcatgtgggagagccaacccttgacactattaatgatac
cctgctgtgcttgcagacaggagcctagagaggctttattcagaagcaga
tagaaacacagacattcacagccgaacataggcagagctcagggagtctg
tggaagagttgcagatagaattgaacaaactggaggggccaaagacatca
caaaaaaaaaaaaaaaaaaaaaaccctacagagttaactaacctggcacc
ataggggctcacagaagactgaaccatcaaccaaaagaacaacacagggg
ctggacctaggtccttacaaattcatagcttggtcttcatggtgggtccc
ctaacaattggacggagcttgtctctgacttcttgtttctgccatggatc
acttccttaacagacttgctgtttgggcatcagcagaagattgtgctagt
ctgctgcatgcatgtcagagcgtacttaaggacttctgaaggaagggtta
ctggggagaggtatttgttacagactggcacatgcgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_99926415_99927464
seq2: B6Ng01-208A16.b_46_1094

seq1  GAATTCTCCTGTCCCTCACAAGTTATTCACGTTGCAAGCGCGCGCTGCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTGTCCCTCACAAGTTATTCACGTTGCAAGCGCGCGCTGCTT  50

seq1  TCTTCTTAGCATTTGCACTTCAGTTTTGAGAATATCAGCCTTGTCTGGGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTTAGCATTTGCACTTCAGTTTTGAGAATATCAGCCTTGTCTGGGG  100

seq1  AGGCAGACCCATGATGCCAGCAAGTCTCCCATCCTCCCGCTCACATTTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGACCCATGATGCCAGCAAGTCTCCCATCCTCCCGCTCACATTTTC  150

seq1  TCAAAGGCACAGAAGGGTGAGTGAGGATCCTTACCCATCCTTACATCCTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGCACAGAAGGGTGAGTGAGGATCCTTACCCATCCTTACATCCTA  200

seq1  TTCTGCTCTAGTCCCCCCTGAGGGTCTAAAGGTCAAAGGCTGCCTGGCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTCTAGTCCCCCCTGAGGGTCTAAAGGTCAAAGGCTGCCTGGCAG  250

seq1  GAATTTGACAGCACACAGATGCATGTCTTCACGATATACCCACCACACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTGACAGCACACAGATGCATGTCTTCACGATATACCCACCACACAA  300

seq1  GTCTGTCAGGCTCACTATTCATTAGGTCATCACTCTTGCTAGACTCCAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGTCAGGCTCACTATTCATTAGGTCATCACTCTTGCTAGACTCCAGG  350

seq1  GTTTTGTGATTTGCTCTGACGGGCCTTCTGTCACAAAGCTTTCCAGAGTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTGTGATTTGCTCTGACGGGCCTTCTGTCACAAAGCTTTCCAGAGTA  400

seq1  CCCTGAGCCTTTTCATGGCTGGAAGGAATTCTGTGGTAGCACGTATTGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGAGCCTTTTCATGGCTGGAAGGAATTCTGTGGTAGCACGTATTGAG  450

seq1  TTTTCTTTGCTCATTTTCTCATTGATTGACATAGACTAGACTACTTATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTTGCTCATTTTCTCATTGATTGACATAGACTAGACTACTTATGG  500

seq1  TTATGCAAGTATAGCAGGGAATATCCCATATTCCCGCCCATGTTTTGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATGCAAGTATAGCAGGGAATATCCCATATTCCCGCCCATGTTTTGTTT  550

seq1  CCTCATCTGTGCAAATCCCTTTGCTCATCACTGAACATGCCATCAAGCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATCTGTGCAAATCCCTTTGCTCATCACTGAACATGCCATCAAGCAG  600

seq1  CCGTATGCCAGTTAAGAACTTTCTCATGAATGCCACTGCTGCTGTCTGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGTATGCCAGTTAAGAACTTTCTCATGAATGCCACTGCTGCTGTCTGGC  650

seq1  CCTCTCTCATACCTGCAAGTCTTCCTGTTTTGACAACAGATCCCAGAGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTCATACCTGCAAGTCTTCCTGTTTTGACAACAGATCCCAGAGTT  700

seq1  TATAGTTTTAGAAGAAGGAACAGCAATAATAGCAGGAGAAGCTCACATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTTTTAGAAGAAGGAACAGCAATAATAGCAGGAGAAGCTCACATTT  750

seq1  CCCAGGACATATA-TTTTTTTTCTTCTCTTACCCTGAGTCCCAAGGGAAA  799
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCCAGGACATATATTTTTTTTTCTTCTCTTACCCTGAGTCCCAAGGGAAA  800

seq1  GAAACATATTTTCAGACAGAGTAAATATTTCTTATAAACCCAAATATAGT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAACATATTTTCAGACAGAGTAAATATTTCTTATAAACCCAAATATAGT  850

seq1  AGCTCCCACAATTTAACGTTTTGTTCTTTTACATAGGAAAGGTTGGGATG  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCCCACAATTTAACGTTTTGTTCTTTTACATAGGAAAGGTTGGGATG  900

seq1  CAGGGATCAGTGTGGGACTCTGGGGTATCTGTGAGATTTGGGGGATGTTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGGATCAGTGTGGGACTCTGGGGTATCTGTGAGATTTGGGGGATGTTC  950

seq1  TTGCCTTTCTGCTTCATCTGCATCCAGTGTAGTTTTCACTCTTCGGGTTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTTTCTGCTTCATCTGCATCCAGTGTAGTTTTCACTCTTCGGGTTA  1000

seq1  CCATAATGTCTGCCAAGTACTATCCAGCATCCCAGCCATGGGAAGGGAGA  1049
      |||||||||||||| |||||||| ||||||||||||||||||||||||||
seq2  CCATAATGTCTGCC-AGTACTAT-CAGCATCCCAGCCATGGGAAGGGAGA  1048

seq1  A  1050
      |
seq2  A  1049