BAC Information

Click to search

BAC

Clone NameB6Ng01-208C15
Chromosome4 (Build37)
Map Location 93,775,741 - 93,889,533
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik, Plaa, LOC667250, Lrrc19, Ift74, Tek, 4930579C15Rik, LOC100039252, Mysm1, LOC100039265, LOC665029, Jun
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208C15.bB6Ng01-208C15.g
ACCGA027115GA027116
length1,2121,123
definitionB6Ng01-208C15.b B6Ng01-208C15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,775,741 - 93,776,948)(93,888,406 - 93,889,533)
sequence
gaattcactcagagcagcaggttttcagcttctatgacatgagatgatca
atgaccacattagccactaatctaaggcataaaacatgcatgaggcatta
gcatggaaatctaacacgttcctcaccccaggtggtactagatttcgaat
ctgttgtcccatctaataggaataaacttaaatagcttatttagaggttc
atttacaaagttaataattagagtgatttactcaataggcaggggaggaa
gaagagagacagatgggtggcgattaaaatgagaaaaacagtaaaagtca
cctcacaaaagccaaacttaacttctggtatgatgtttttgtttatagtt
atagtcttttgagagagaatcaggttaaggggagaaaatgaaaatgagag
aggggagaaaatgggcctttagaaattaggtattaattagaggtcaaaaa
aatcaacactgttttagaacacactgtacaatgagttcaatttcccaaac
ttttttttacctctttaacattggaatgatagaagctgctccacatggat
ttaaatgaggaaaccaaagaggaaggtatctaattattagtgtttccatt
ccttagtggattcaccaggaagtgccgagatgtaaatatgcactcttcct
ccaaaatctacatggcagcaattgaactggtcacaaatttcaacggtgtt
tcatttgcccttacacccagagggaaagcaatcaaatgagttatataatt
tagtataaggtgctatagcaaacaaatgatggcctgctaattatcagtca
acaaatacggagtctgtcaatcttctctccaatgacttatggttctctat
cctattcatgacaactggttcaaagtttacccttaaatttaaaatgtttg
ggacaacagcccaaagggatggccctttaataatattttcaactataagt
ggctaaatatttttcttgtttgtttaaatatttatttattttatgtatat
tagtacaattatagctgtcttcagacacaccagaagaggggcgtcagacc
cattacagatggttatggagccaccatggtggttgcagggaattggaacc
tcagaacctcagaccagcagtcaggtgcttcttaccttctgagcaatctc
ttccacccccccccatttttttttaaattacctggaacctcctaatacat
aaccaattatct
gaattccagttctgggtgagtgcatggattcttttatcggattccccccc
cccccccagattctggcattttctttgcctgcatggactcagtggaagag
tcactgagaccctatgtggctctctagggttcggtgtctctgcaacttcc
ccctttagtactctgttctgtgaacattaggtaccatgggtttcccttac
aacaagcccagagtcctcctcagctttgggagaaccttggtactacctgg
tgcctggattccatagtcatgtagaaacaatttgcttcttttgagtatgg
acagttggtagcaacctttagagcatcctttggagttttgccaatttcgt
tatgctgcccaaagaaggactatattccccacagtgtgaagaaagtggtg
tgggagaatctgtttctaaaaaggacaagaacatgaaatacaagccaaat
acccaatgctaacaccagacagcaagtgcggaacataagagagagcaagc
attcagagcttttcacttccactgttcactaaaagaacacacaccagcag
ctgtttgcacagtggaaaatagccagtgatctataggattaaacttttga
ttcaggctattaagaagaatccaaagaatgcctatatgtaagattatagg
gtggtatctacctcactaaataattaaaaagatggatgcaacatgcaagt
taggacttgctaagaaaaattatgggtaggtatacagtttcataaagagg
tatgtgttctgaaattcttttctatactcaacacaaactccataaactcc
aatcataaaaattccctgtttagagaatttattattgggatttcagttgc
aaagagggagatgcaaaaaatatgtgtaatttgggactttttttttttta
aatgtttgggattctgaaagtctttctgacatgaaactgcatactagttt
tgttattgggacaaacaatgaatgcaaaatggggaaaagtagaggtagaa
atgaagacatctttttgtttgtttggtttgtttggtttgcttttgggttt
tttcagacaggatttctctgtatagtctgctgtctggactcactctgtta
gaccaggctggctcggaactcag
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93775741_93776948
seq2: B6Ng01-208C15.b_46_1257

seq1  GAATTCACTCAGAGCAGCAGGTTTTCAGCTTCTATGACATGAGATGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGAGCAGCAGGTTTTCAGCTTCTATGACATGAGATGATCA  50

seq1  ATGACCACATTAGCCACTAATCTAAGGCATAAAACATGCATGAGGCATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCACATTAGCCACTAATCTAAGGCATAAAACATGCATGAGGCATTA  100

seq1  GCATGGAAATCTAACACGTTCCTCACCCCAGGTGGTACTAGATTTCGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGGAAATCTAACACGTTCCTCACCCCAGGTGGTACTAGATTTCGAAT  150

seq1  CTGTTGTCCCATCTAATAGGAATAAACTTAAATAGCTTATTTAGAGGTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTTGTCCCATCTAATAGGAATAAACTTAAATAGCTTATTTAGAGGTTC  200

seq1  ATTTACAAAGTTAATAATTAGAGTGATTTACTCAATAGGCAGGGGAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACAAAGTTAATAATTAGAGTGATTTACTCAATAGGCAGGGGAGGAA  250

seq1  GAAGAGAGACAGATGGGTGGCGATTAAAATGAGAAAAACAGTAAAAGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGAGACAGATGGGTGGCGATTAAAATGAGAAAAACAGTAAAAGTCA  300

seq1  CCTCACAAAAGCCAAACTTAACTTCTGGTATGATGTTTTTGTTTATAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCACAAAAGCCAAACTTAACTTCTGGTATGATGTTTTTGTTTATAGTT  350

seq1  ATAGTCTTTTGAGAGAGAATCAGGTTAAGGGGAGAAAATGAAAATGAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGTCTTTTGAGAGAGAATCAGGTTAAGGGGAGAAAATGAAAATGAGAG  400

seq1  AGGGGAGAAAATGGGCCTTTAGAAATTAGGTATTAATTAGAGGTCAAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGAGAAAATGGGCCTTTAGAAATTAGGTATTAATTAGAGGTCAAAAA  450

seq1  AATCAACACTGTTTTAGAACACACTGTACAATGAGTTCAATTTCCCAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAACACTGTTTTAGAACACACTGTACAATGAGTTCAATTTCCCAAAC  500

seq1  TTTTTTTTACCTCTTTAACATTGGAATGATAGAAGCTGCTCCACATGGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTTACCTCTTTAACATTGGAATGATAGAAGCTGCTCCACATGGAT  550

seq1  TTAAATGAGGAAACCAAAGAGGAAGGTATCTAATTATTAGTGTTTCCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGAGGAAACCAAAGAGGAAGGTATCTAATTATTAGTGTTTCCATT  600

seq1  CCTTAGTGGATTCACCAGGAAGTGCCGAGATGTAAATATGCACTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTAGTGGATTCACCAGGAAGTGCCGAGATGTAAATATGCACTCTTCCT  650

seq1  CCAAAATCTACATGGCAGCAATTGAACTGGTCACAAATTTCAACGGTGTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATCTACATGGCAGCAATTGAACTGGTCACAAATTTCAACGGTGTT  700

seq1  TCATTTGCCCTTACACCCAGAGGGAAAGCAATCAAATGAGTTATATAATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTGCCCTTACACCCAGAGGGAAAGCAATCAAATGAGTTATATAATT  750

seq1  TAGTATAAGGTGCTATAGCAAACAAATGATGGCCTGCTAATTATCAGTCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTATAAGGTGCTATAGCAAACAAATGATGGCCTGCTAATTATCAGTCA  800

seq1  ACAAATACGGAGTCTGTCAATCTTCTCTCCAATGACTTATGGTTCTCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATACGGAGTCTGTCAATCTTCTCTCCAATGACTTATGGTTCTCTAT  850

seq1  CCTATTCATGACAACTGGTTCAAAGTTTACCCTTAAATTTAAAATGTTTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTCATGACAACTGGTTCAAAGTTTACCCTTAAATTTAAAATGTTTG  900

seq1  GGACAACAGCCCAAAGGGATGGCCCTTTAATAATATTTTCAACTATAAGG  950
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGACAACAGCCCAAAGGGATGGCCCTTTAATAATATTTTCAACTATAA-G  949

seq1  TGGCTAAATATTTTTCTTGTTTGTTTTAAATATTTATTTATTTTATGTAT  1000
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  TGGCTAAATATTTTTCTTGTTTG-TTTAAATATTTATTTATTTTATGTAT  998

seq1  ATTAGTACAATTATAGCTGTCTTCAGACACACCAGAAGA-GGGCGTCAGA  1049
      ||||||||||||||||||||||||||||||||||||||| ||||||||| 
seq2  ATTAGTACAATTATAGCTGTCTTCAGACACACCAGAAGAGGGGCGTCAG-  1047

seq1  ACCCATTACAGATGGTTAT-GAGCCACCAT-GTGGTTGCAGGGAATTG--  1095
      ||||||||||||||||||| |||||||||| |||||||||||||||||  
seq2  ACCCATTACAGATGGTTATGGAGCCACCATGGTGGTTGCAGGGAATTGGA  1097

seq1  AACTCAGGACCTCAGGAACAGCAGTCA-GTGC-TCTTAACCTCTGAGCCA  1143
      | ||||| |||||| || ||||||||| |||| ||||| | ||||||| |
seq2  ACCTCAGAACCTCA-GACCAGCAGTCAGGTGCTTCTTACCTTCTGAGCAA  1146

seq1  TCTC-TCCACCCCCCCCCTTTTTTTTTAAATTTAACTTGTACCTCCTAAT  1192
      |||| ||||||||||||| |||||||| || ||| || | ||||||||||
seq2  TCTCTTCCACCCCCCCCCATTTTTTTTTAAATTACCTGGAACCTCCTAAT  1196

seq1  -CATAACAAATTTATCT  1208
       |||||| || ||||||
seq2  ACATAACCAA-TTATCT  1212

seq1: chr4_93888406_93889533
seq2: B6Ng01-208C15.g_66_1188 (reverse)

seq1  CTGAGTTCGAGGCCAGCCTGGTCT-ACAGAGTGAGTTCCAGGACAGCCAG  49
      ||||||||   ||||||||||||| |||||||||| |||| ||||||   
seq2  CTGAGTTCCGAGCCAGCCTGGTCTAACAGAGTGAG-TCCA-GACAGC--A  46

seq1  GGCTATACAGAGAAACCCTGTCTTGAAAAAACACAAAAACAAAACAAAAC  99
      | ||||||||||||| |||||| ||||||||| ||||| |||| ||||  
seq2  GACTATACAGAGAAATCCTGTC-TGAAAAAACCCAAAAGCAAACCAAA--  93

seq1  AAAACAAAACAAAACAAAAAAGATGTCTTCATTTTCTACCTCTTACTTTT  149
       |||| |||||||   ||||||||||||||| |||||||||| |||||||
seq2  CAAACCAAACAAA--CAAAAAGATGTCTTCA-TTTCTACCTC-TACTTTT  139

seq1  -CCCATTTTGCATTCATTGTTTGT-CCAATAACAAAACTAGTATGCAGTT  197
       ||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  CCCCATTTTGCATTCATTGTTTGTCCCAATAACAAAACTAGTATGCAGTT  189

seq1  TCATGTCAG-AAGACTTTCAGAAT-CCAAACATTT-AAAAAAAAAAAGTC  244
      ||||||||| |||||||||||||| |||||||||| ||||||||||||||
seq2  TCATGTCAGAAAGACTTTCAGAATCCCAAACATTTAAAAAAAAAAAAGTC  239

seq1  CCAAATTACACATATTTTTTGCATCTCCCTCTTTGCAACTGAAATCCCAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAATTACACATATTTTTTGCATCTCCCTCTTTGCAACTGAAATCCCAA  289

seq1  TAATAAATTCTCTAAACAGGGAATTTTTATGATTGGAGTTTATGGAGTTT  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAATTCTCTAAACAGGGAATTTTTATGATTGGAGTTTATGGAGTTT  339

seq1  GTGTTGAGTATAGAAAAGAATTTCAGAACACATACCTCTTTATGAAACTG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTGAGTATAGAAAAGAATTTCAGAACACATACCTCTTTATGAAACTG  389

seq1  TATACCTACCCATAATTTTTCTTAGCAAGTCCTAACTTGCATGTTGCATC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCTACCCATAATTTTTCTTAGCAAGTCCTAACTTGCATGTTGCATC  439

seq1  CATCTTTTTAATTATTTAGTGAGGTAGATACCACCCTATAATCTTACATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTTAATTATTTAGTGAGGTAGATACCACCCTATAATCTTACATA  489

seq1  TAGGCATTCTTTGGATTCTTCTTAATAGCCTGAATCAAAAGTTTAATCCT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCATTCTTTGGATTCTTCTTAATAGCCTGAATCAAAAGTTTAATCCT  539

seq1  ATAGATCACTGGCTATTTTCCACTGTGCAAACAGCTGCTGGTGTGTGTTC  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATCACTGGCTATTTTCCACTGTGCAAACAGCTGCTGGTGTGTGTTC  589

seq1  TTTTAGTGAACAGTGGAAGTGAAAAGCTCTGAATGCTTGCTCTCTCTTAT  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTGAACAGTGGAAGTGAAAAGCTCTGAATGCTTGCTCTCTCTTAT  639

seq1  GTTCCGCACTTGCTGTCTGGTGTTAGCATTGGGTATTTGGCTTGTATTTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCGCACTTGCTGTCTGGTGTTAGCATTGGGTATTTGGCTTGTATTTC  689

seq1  ATGTTCTTGTCCTTTTTAGAAACAGATTCTCCCACACCACTTTCTTCACA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCTTGTCCTTTTTAGAAACAGATTCTCCCACACCACTTTCTTCACA  739

seq1  CTGTGGGGAATATAGTCCTTCTTTGGGCAGCATAACGAAATTGGCAAAAC  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGGGAATATAGTCCTTCTTTGGGCAGCATAACGAAATTGGCAAAAC  789

seq1  TCCAAAGGATGCTCTAAAGGTTGCTACCAACTGTCCATACTCAAAAGAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAAGGATGCTCTAAAGGTTGCTACCAACTGTCCATACTCAAAAGAAG  839

seq1  CAAATTGTTTCTACATGACTATGGAATCCAGGCACCAGGTAGTACCAAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGTTTCTACATGACTATGGAATCCAGGCACCAGGTAGTACCAAGG  889

seq1  TTCTCCCAAAGCTGAGGAGGACTCTGGGCTTGTTGTAAGGGAAACCCATG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCCAAAGCTGAGGAGGACTCTGGGCTTGTTGTAAGGGAAACCCATG  939

seq1  GTACCTAATGTTCACAGAACAGAGTACTAAAGGGGGAAGTTGCAGAGACA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACCTAATGTTCACAGAACAGAGTACTAAAGGGGGAAGTTGCAGAGACA  989

seq1  CCGAACCCTAGAGAGCCACATAGGGTCTCAGTGACTCTTCCACTGAGTCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAACCCTAGAGAGCCACATAGGGTCTCAGTGACTCTTCCACTGAGTCC  1039

seq1  ATGCAGGCAAAGAAAATGCCAGAATCTGGGGGGGGGGGGGGAATCCGATA  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCAGGCAAAGAAAATGCCAGAATCTGGGGGGGGGGGGGGAATCCGATA  1089

seq1  AAAGAATCCATGCACTCACCCAGAACTGGAATTC  1128
      ||||||||||||||||||||||||||||||||||
seq2  AAAGAATCCATGCACTCACCCAGAACTGGAATTC  1123