BAC Information

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BAC

Clone NameB6Ng01-208D06
Chromosome4 (Build37)
Map Location 147,184,402 - 147,185,595
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677
Downstream geneLOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151, Srm, Masp2, Tardbp, Gm572, LOC100041733, LOC100041742, LOC100041755, Casz1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-208D06.bB6Ng01-208D06.g
ACCGA027144GA027145
length1,2311,200
definitionB6Ng01-208D06.b B6Ng01-208D06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcagattgtctttgttagtaaaccatttctcagatttctctcat
ttgtaaggtttctctcctctatgaaatttctgatgaatactaagatggga
ttttcgggtaaagaatttgtgacattcactacatttgtaaggtttctctc
ttgtatgaattctctgttgagttctcagtatgtctttttcagtaaagcat
ttgtaccattcactacatttgtaaggtttctctcctttatggattctctg
atgaatactaagatggaatttttgggtaaagaatttgtcacattgactac
atttgtaaggtttctctcctgtatgaattctctgatgcatactaagattg
gattgtctggtacagcatttgtcacattcactacatttgtaaggtttctc
tcctttatgaattccctgatgaatactaagatgggatttttggggagagc
acttgtcacattcatgacatttgtaaggtttctctactgtgtgaagtctc
tgatgaattctcagattacctttgttagtaaagcatttctcatattcact
gcatttgtaaggcttctctcctgtatgaattttctgatgaatactaagct
tggcttggtaggtaaagcatttgtcacattgactatatttgtaaggtttc
tctcctgtatgaactttctgatgaatactaagattggatttttcgggtaa
agcatttgtcactttgactacatttgtaaggtttttatccattattaatt
ctctgatgaattctcagattgtctttgttagtatttctcacattcactgc
atttgtaaggtttctctcctgtatgaaatttctgatgaatactaagatgg
gattttcgggtaaagaatttgtcacattcactacatttgtaaggtttctc
tcctgtatgaattctctgatgccttctcaaattgcctttttcagtaaagc
aattgtcacattcactgcatttgtaaggtttctctccttgtatgatttct
ctgatgagatcctcaattaaattttggggtaaagcatttgtcacattcca
ctgcatttgtaagtttctctctgtatgaaatctctgatgaattctcagag
tgccttttctagtaaagccatttgttccacattcactgccattgtaaagg
tttttctcctggatgatcctgaatgcctttcgaggtgcttttttcaagta
agcgactgttccacattcacacgagtgctat
gaattcaactttggactcacacttagttaaatgctctgagggaaaggctt
tcatttctttccttaactcagatgcattattaatcaccagtatgtttaat
ctattcacatatgaggaatcaattaacttgtgacattttttttttttttt
tgcataagtacaatatggggaaaactaaaactcaacacaatgggaaacaa
gtagccctgccatctgaaaggtgtccataggcacagaaccctatttaaag
acagaaccccaggtctgggcttgtgcttctgagctctcacctccatgctg
agctagaatccattttaacctctcataatcatcacaacaggttttgaaca
tcagaggtcacatgagaatcctggaactcattacaatcatgaaaagagtt
gacttcctagcaagagtctaatgagatttgggtaaatctcaggtctcctt
tccccagcttatactgatatgcatgggtgtacatagagtgtttcagtgaa
caatcaggaaaccatttatgagcaatcagtgcagtatgtattgtaatttt
gttcaagttttctttctttcatcctttctttctttctttctttctttctt
tctttctttctttctttcttacttcctttccttacttttttttttttgac
aaagatcaagacagttttccaaaggagtttctctttattgtatcaccctt
caagaagtaaataatattgtgccttgacctaacatcattttaattcatca
ttttctttgattgaggcatccacctcctctaccttttctttaagtctgat
aatctgtctcccacaggttctctatgtattattttttatttgccttactg
cattttcttttcagggatttttttttttggcattttctaagcacttattg
gaggtcaatttaatattttatattgtcatttccttcaggaatctgggtat
tatttttcttgcccatgaattttatttcgttcctctctctggaggtggga
tggaatttaacatgggtttacaaaactttaaattgtcctttggaatcaat
gaattgtggggtttctaattccttggtcttgggaatattcaccaataaaa
atgtgcctcttataggataactataatggattgcggattgaagcaaggga
catttttatctagtatggctgcctggtatctgtttctgagacaatcagaa

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_147184402_147185595
seq2: B6Ng01-208D06.g_66_1265 (reverse)

seq1  TTCTGAT--GCTCAG-AACAGATACCCAAAACAAACAATAACTTAGAT-A  46
      |||||||   ||||| ||||||||||   |   | | |||   ||||| |
seq2  TTCTGATTGTCTCAGAAACAGATACC---AGGCAGCCATA--CTAGATAA  45

seq1  AAATGT-CCTTGGCTCAAACCGCAAACCA-TATAGGTATCCTATAAGGAG  94
      |||||| |||||  |||| |||||| ||| ||||| |||||||||||  |
seq2  AAATGTCCCTTGCTTCAATCCGCAATCCATTATAGTTATCCTATAAGAGG  95

seq1  CACAATTTATTTG----ATAT--CGAAGACAAAG--AATAGAAAACCCAC  136
      |||| |||  |||    ||||  | ||||| |||  | |||||| |||||
seq2  CACATTTTTATTGGTGAATATTCCCAAGACCAAGGAATTAGAAACCCCAC  145

seq1  AA-TCA-TGAT---CAAGGACA--TTAAAG-TTTGTAAA-CCATGT--AA  175
      || ||| ||||    |||||||  |||||| |||||||| ||||||  ||
seq2  AATTCATTGATTCCAAAGGACAATTTAAAGTTTTGTAAACCCATGTTAAA  195

seq1  ATCCA-CTCA-CTC---AGAGAGAAACGAAATAAA--TCATGGGCAAG-A  217
       |||| | || |||   |||||| |||||||||||  ||||||||||| |
seq2  TTCCATCCCACCTCCAGAGAGAGGAACGAAATAAAATTCATGGGCAAGAA  245

seq1  AAATAATA-CCAGATTCCTGAAGGAAATGACAATATAAAATATTAAAATT  266
      |||||||| ||||||||||||||||||||||||||||||||||| |||||
seq2  AAATAATACCCAGATTCCTGAAGGAAATGACAATATAAAATATT-AAATT  294

seq1  GA-CTTCAATAAGTGCTTAG-AAATGCCAAAAAAAAA---TCCTGAAAAG  311
      || || |||||||||||||| ||||||||||||||||    |||||||||
seq2  GACCTCCAATAAGTGCTTAGAAAATGCCAAAAAAAAAAATCCCTGAAAAG  344

seq1  AAAATGCAGTAAGGCAAAT-AAAAATAATACATAGAGAACCTGTGGGAGA  360
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  AAAATGCAGTAAGGCAAATAAAAAATAATACATAGAGAACCTGTGGGAGA  394

seq1  CAGATTATCAGACTTAAAGAAAAGGTAGAGGAGGTGGATGCCTCAATCAA  410
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATTATCAGACTTAAAGAAAAGGTAGAGGAGGTGGATGCCTCAATCAA  444

seq1  AGAAAATGATGAATTAAAATGATGTTAGGTCAAGGCACAATATTATTTAC  460
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATGATGAATTAAAATGATGTTAGGTCAAGGCACAATATTATTTAC  494

seq1  TTCTTGAAGGGTGAGACAATAAAGAGAAACTCCTTTGGAAAACTGTCTTG  510
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TTCTTGAAGGGTGATACAATAAAGAGAAACTCCTTTGGAAAACTGTCTTG  544

seq1  ATCTTTGTCAAAAAAAAAAAAGTAAGGAAAGGAAGTAAGGAAGTAAGAAG  560
      ||||||||||||||||||||||||||||||||||||              
seq2  ATCTTTGTCAAAAAAAAAAAAGTAAGGAAAGGAAGT--------------  580

seq1  GAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  610
                            ||||||||||||||||||||||||||||
seq2  ----------------------AAGAAAGAAAGAAAGAAAGAAAGAAAGA  608

seq1  AAGAAAAGAAAGAAAGAAAGGATGAAAGAAAGAAAACTTGAACAAAATTA  660
      ||| ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAG-AAAGAAAGAAAGAAAGGATGAAAGAAAGAAAACTTGAACAAAATTA  657

seq1  CAATACATACTGCACTGTTTGTTGATAAATGGTTTCCTGATTGTTCCCTG  710
      ||||||||||||||||| ||| | |||||||||||||||||||||| |||
seq2  CAATACATACTGCACTGATTGCTCATAAATGGTTTCCTGATTGTTCACTG  707

seq1  TAACACTCTATG-ACACCCATGCATATCAGTATAAGCTGGGGAAAGGAGA  759
       ||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  AAACACTCTATGTACACCCATGCATATCAGTATAAGCTGGGGAAAGGAGA  757

seq1  CTCGAGATTTACCCAAGTCTCATTAGACTCTTGCTAGGAAGTCAACTCTT  809
      |  ||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CCTGAGATTTACCCAAATCTCATTAGACTCTTGCTAGGAAGTCAACTCTT  807

seq1  TTCATGATTGTAATGAGTTCCAGGATTCTCAT-TGACCTCTGAGGTTCAA  858
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  TTCATGATTGTAATGAGTTCCAGGATTCTCATGTGACCTCTGATGTTCAA  857

seq1  AACCTGTTGTGATGATTATGAGAGGTTAAAATGGATTCTAGCTCAGCATG  908
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTTGTGATGATTATGAGAGGTTAAAATGGATTCTAGCTCAGCATG  907

seq1  GCGGTGAGAGCTCAGAAGCACAAGCCCAGACCTGGGGTTCTGTCTTTAAA  958
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTGAGAGCTCAGAAGCACAAGCCCAGACCTGGGGTTCTGTCTTTAAA  957

seq1  TAGGGTTCTATGCCTATGGACACCTTTCAGATGGCAGGGCTACTTGTTTC  1008
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTCTGTGCCTATGGACACCTTTCAGATGGCAGGGCTACTTGTTTC  1007

seq1  CCATTGTGTTGAGTTTTAGTTTTCCCCATATTGTACTTATGCAAAAAAAA  1058
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGTGTTGAGTTTTAGTTTTCCCCATATTGTACTTATGCAAAAAAAA  1057

seq1  AA-------GTCACAAGTTAATTGATTCTTCATATGTGAGTAGATTAAAC  1101
      ||       ||||||||||||||||||| |||||||||| ||||||||||
seq2  AAAAAAAATGTCACAAGTTAATTGATTCCTCATATGTGAATAGATTAAAC  1107

seq1  ATACTGGTGATTAATAATGCATCTGAGTTAAGGAAAGAAATAAAAGCCTT  1151
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATACTGGTGATTAATAATGCATCTGAGTTAAGGAAAGAAATGAAAGCCTT  1157

seq1  TTCCTCAGAGCATTTAACTAAGTGTGAGTCCAAAGTTGAATTC  1194
      | |||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTCAGAGCATTTAACTAAGTGTGAGTCCAAAGTTGAATTC  1200