BAC Information

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BAC

Clone NameB6Ng01-209D20
Chromosome4 (Build37)
Map Location 119,945,693 - 119,946,788
singlet/doubletsinglet
Overlap geneFoxo6
Upstream geneYbx1, Ppih, 1700041C02Rik, Ldha-ps2, LOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2
Downstream geneScmh1, Slfnl1, Ctps, EG667063, Cited4, Kcnq4, Nfyc, Rims3, LOC626489, 3110037I16Rik, Zfp69, Smap1l, Col9a2, Zmpste24, Tmco2, LOC100042174, Rlf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209D20.bB6Ng01-209D20.g
ACCGA027907GA027908
length1,1821,120
definitionB6Ng01-209D20.b B6Ng01-209D20.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattccaggatctcaggagcttggtcacaccaggcatctcagggtccca
gagacagcttgactctcaggagctctgacacacccaggatctcaggatca
caggatcccagaatcacaggatcccagaatcacaggatcacagagacagc
tgaactctgaggagttctgacacaaccaggatcactggaaggacaggctc
cagtcagatatagtgagggcaggtagcactagagataattagatggcgag
aggcaagcgtaagaacacaagcgacagaaaccaaggttacttggcatcat
cagaacccaattctcccaccatagcaagtcctggatacaccatcacactg
gaaaagcaagattcagatttaaaaaaaaaatcacttctcatgatgatgat
agaggactttaagaaggacataaataactcgaccttaaagaaatacagga
gaacacaggtaaaacagctagatgttcttaaagaggaaacacaaaaaaat
cccttgaattacaggaaaaaaacaatcaaacaggtgagggaaatgaacaa
aaccatccaagatataaaaatggaaatagaaacaataaagaaatcacaaa
gggagacaaccctggagttagaaaacctaggaaagagatcaggagtcata
gataaaagcatcaccaacagaatacaagagatagaagagagaatctcagg
tacagaagataccatagaaaaacattgacacaacagttcaaagaaaatgc
aaaaagcaaaaaagctcctaacccaaaacatacagggaaaattcaagaca
caattgagaagacgaaacataagggataataggtatagaaagagagcaaa
gaggtcccaacttaaatggccagtaaaatatcaacaaattatagaagaaa
aactttccctaacctaaaagaaagagatgcccatgaacatacaagaagcc
tacagaaactccaaatagactgggaccagaaaaataaatttcttcccatc
acataatagtcaaaatacctaatgcccaaaacaaaagttaggaataatta
aaaggcattaagggtaaataggtccagtaacttataaagggcagatctta
ttcagatattccactcagaactttcctcaccgaatgaacttgtaagctct
gaaagaaatcccttggggtgtaagttcattac
gaattctctcatctcgttttcctccagtctgaagctttctaaggttctta
ccttctgggttaatagaagttgaaatgagtacctagtgaatgctaacttg
aaaaatctcgtatctgaaaaaggctccaaaatctgccaacttttaaatta
tggcgtccagatctgtgggttagggatgccccaagtctatgcaaatatcc
caaaatccaaaggattttgtattcagtaatacatctgtggccaagcattt
tgggtaagggacactcagcctctgtataacttgttgatcatttacctact
gtctgatggccttgcattagaacttttgtaagggtagtaacctatcccca
ccccatttttttttcctttactcaatgtgtttggcatacactaggcactt
gaaagtttgttcagtgaaggaataagagatatacatacatacatgacacc
gggctgtagggggatctgagtgaactagccctggctggcacacaatagag
acttttctgaactagtttaggaagccaactcaggataggatgaacaaaca
gctatcaaggaccaaggaaaagtcaggcccaccagggtggagagaggaca
ggtttctctgcatgctgacgaagggctcacaggcagctcctgactccccg
gcctccacctgctcccagactgccccaggctggctcctacccagacctcc
cacaacactgtccccctaggccagaagacactccgagagcttcagcaggt
cagaatgacctcgaccttggtgccttccccacggatagggtctgatccat
ctggtggtgacagctcatctatccatcaggacaccctcatctattcccag
gacaccctttcgcccacgagcagttatgcatttcatctgacagcacaacc
ccatttattccagcacaccgggtcccaatttatccagcaagtaccaacct
catttgcttaacagcacttcaattcacctgacgggggccccttcatttta
tccagcaaggaacacccctccattattcctccaagtcgggacaacgcctt
cttcttcctgtggtttggctgtggttcttcggatgggtgcaactcaagct
gactccagcaagaacgccat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_119945693_119946788
seq2: B6Ng01-209D20.g_69_1188

seq1  GAATTCTCTCATCTCGTTTTCCTCCAGTCTGAAGCTTTCTAAGGTTCTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTCATCTCGTTTTCCTCCAGTCTGAAGCTTTCTAAGGTTCTTA  50

seq1  CCTTCTGGGTTAATAGAAGTTGAAATGAGTACCTAGTGAATGCTAACTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGGGTTAATAGAAGTTGAAATGAGTACCTAGTGAATGCTAACTTG  100

seq1  AAAAATCTCGTATCTGAAAAAGGCTCCAAAATCTGCCAACTTTTAAATTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAATCTCGTATCTGAAAAAGGCTCCAAAATCTGCCAACTTTTAAATTA  150

seq1  TGGCGTCCAGATCTGTGGGTTAGGGATGCCCCAAGTCTATGCAAATATCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGTCCAGATCTGTGGGTTAGGGATGCCCCAAGTCTATGCAAATATCC  200

seq1  CAAAATCCAAAGGATTTTGTATTCAGTAATACATCTGTGGCCAAGCATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCCAAAGGATTTTGTATTCAGTAATACATCTGTGGCCAAGCATTT  250

seq1  TGGGTAAGGGACACTCAGCCTCTGTATAACTTGTTGATCATTTACCTACT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTAAGGGACACTCAGCCTCTGTATAACTTGTTGATCATTTACCTACT  300

seq1  GTCTGATGGCCTTGCATTAGAACTTTTGTAAGGGTAGTAACCTATCCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGATGGCCTTGCATTAGAACTTTTGTAAGGGTAGTAACCTATCCCCA  350

seq1  CCCCATTTTTTTTTCCTTTACTCAATGTGTTTGGCATACACTAGGCACTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCATTTTTTTTTCCTTTACTCAATGTGTTTGGCATACACTAGGCACTT  400

seq1  GAAAGTTTGTTCAGTGAAGGAATAAGAGATATACATACATACATGACACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTGTTCAGTGAAGGAATAAGAGATATACATACATACATGACACC  450

seq1  GGGCTGTAGGGGGATCTGAGTGAACTAGCCCTGGCTGGCACACAATAGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTAGGGGGATCTGAGTGAACTAGCCCTGGCTGGCACACAATAGAG  500

seq1  ACTTTTCTGAACTAGTTTAGGAAGCCAACTCAGGATAGGATGAACAAACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTCTGAACTAGTTTAGGAAGCCAACTCAGGATAGGATGAACAAACA  550

seq1  GCTATCAAGGACCAAGGAAAAGTCAGGCCCACCAGGGTGGAGAGAGGACA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATCAAGGACCAAGGAAAAGTCAGGCCCACCAGGGTGGAGAGAGGACA  600

seq1  GGTTTCTCTGCATGCTGACGAAGGGCTCACAGGCAGCTCCTGACTCCCCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTCTGCATGCTGACGAAGGGCTCACAGGCAGCTCCTGACTCCCCG  650

seq1  GCCTCCACCTGCTCCCAGACTGCCCCAGGCTGGCTCCTACCCAGACCTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTCCACCTGCTCCCAGACTGCCCCAGGCTGGCTCCTACCCAGACCTCC  700

seq1  CACAACACTGTCCCCCTAGGCCAGAAGACACTCCGAGAGCTTCAGCAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAACACTGTCCCCCTAGGCCAGAAGACACTCCGAGAGCTTCAGCAGGT  750

seq1  CAGAATGACCTCGACCTTGGTGCCTTCCCCACGGATAGGGTCTGATCCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAATGACCTCGACCTTGGTGCCTTCCCCACGGATAGGGTCTGATCCAT  800

seq1  CTGGTGGTGACAGCTCATCTATCCATCAGGACACCCTCATCTATTCCCAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTGGTGACAGCTCATCTATCCATCAGGACACCCTCATCTATTCCCAG  850

seq1  GACACCC-TTCGCCCACGAGCAGTAATGCA-TTCATCTGACAGCACAACC  898
      ||||||| |||||||||||||||| ||||| |||||||||||||||||||
seq2  GACACCCTTTCGCCCACGAGCAGTTATGCATTTCATCTGACAGCACAACC  900

seq1  CCATTTA-TCCAGCACACC-GGTCCC-ATTTATCCAGCAAGTA-CAACCT  944
      ||||||| ||||||||||| |||||| |||||||||||||||| ||||||
seq2  CCATTTATTCCAGCACACCGGGTCCCAATTTATCCAGCAAGTACCAACCT  950

seq1  CATTTGC-TAACAGCAC-TCCATTCACCTGACGGGG--CCCCTCA-TTTA  989
      ||||||| ||||||||| || |||||||||||||||  ||| ||| ||||
seq2  CATTTGCTTAACAGCACTTCAATTCACCTGACGGGGGCCCCTTCATTTTA  1000

seq1  TCCAGCA--GGACACCC--TCATTTATCCTCCAAGTC-GGAC-ACG-CTC  1032
      |||||||  | ||||||   ||||  ||||||||||| |||| ||| || 
seq2  TCCAGCAAGGAACACCCCTCCATTATTCCTCCAAGTCGGGACAACGCCTT  1050

seq1  CTTCCTCCTGTGGTTTGGCTGT-GTTC-TCCGAT-GGTGCAAC-CCAGCT  1078
      |||| ||||||||||||||||| |||| || ||| |||||||| | ||||
seq2  CTTCTTCCTGTGGTTTGGCTGTGGTTCTTCGGATGGGTGCAACTCAAGCT  1100

seq1  GA-TCCAGC-AGGACGCCAT  1096
      || |||||| || |||||||
seq2  GACTCCAGCAAGAACGCCAT  1120