BAC Information

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BAC

Clone NameB6Ng01-209G05
Chromosome4 (Build37)
Map Location 46,290,048 - 46,420,863
singlet/doubletdoublet
Overlap geneLOC666389, Foxe1, 5830415F09Rik, Hemgn
Upstream geneFrmpd1, Rg9mtd3, Exosc3, LOC666325, Wdr32, Mcart1, Shb, LOC100040140, LOC100040557, Gm829, LOC100040567, LOC100040580, Aldh1b1, Igfbpl1, 1300002K09Rik, Tdrd7, Tmod1, BC057893, AU014645, Xpa, LOC624430, LOC666379
Downstream geneLOC100040643, Anp32b, Nans, Trim14, Coro2a, Tbc1d2, Gabbr2, Anks6, LOC435781, Galnt12, Col15a1, Tgfbr1, LOC666236
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209G05.bB6Ng01-209G05.g
ACCGA028018GA028019
length165978
definitionB6Ng01-209G05.b B6Ng01-209G05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,420,699 - 46,420,863)(46,290,048 - 46,291,015)
sequence
caggccagcctggtctacagagtgagtttcttatcaaatagggctataca
gagaaaccctgtctcaaaaatcaaacaaacaaaagaccaatttacaaact
acataacgtcagggacttcctttttttaggttttttgtttgtttgtttgt
tttgttttgtttttt
gaattcttagggaaagcagtcagctataagcccctagggattaagagggc
actaatggcctgtgacaaaggcagcaggataaactcggctctgcagacta
aacaaggctcaaggggccaagtcaaacaaagcagtagttttgcgctggcc
aacaggaatggcccagcctctcgggcggccagtctctcatctcaccctgg
aatctcctctggtggcctttaccccttgtcccactgaaggctagaccaaa
gcacgtctgtaatagttctcgctatggtcagccccacttcctatcataga
ccacacctcctcgctctggcggtccatacttcctatcatagaccacgctt
cctggagaccacacctccaaccccagccactagaggaggaaactgctcag
agaggagaggaagatacttgtcctggaatcacacgccaagtgaaacaacc
ttgggacccaagaccccttgattcccacttcaccaagaccccaaaagtct
tccttaagttagtttcacacaactgtgaacatcagaatagagggagctgg
gttcaggatcttctctgcatggggagggcgtcgcaagattttcgggagat
gcctgaaaccacaggcagaaccaaacctgatagaaaatatactttttcct
atatatataactatgacaatttaacttctaaatatgcacagtaaagaaat
taacgatgataaatgaaccaagcatagtaacaccctctatttcagtttat
gtctcaaagcatctattgccccgtgcatcttaggaccctatatatgtgca
tacatataggcacacacaacacacacacactcacaacacacatgcacgca
cgcacacgtataacttttttcaaatcctattttttaatcatggttcttaa
agactttaacctccctgctagcccaaccacccactagaagtcgttgtaaa
agaaagaaatacgggttgggggggtagc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_46420699_46420863
seq2: B6Ng01-209G05.b_54_218 (reverse)

seq1  AAAAAACAAAACAAAACAAACAAACAAACAAAAAACCTAAAAAAAGGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACAAAACAAAACAAACAAACAAACAAAAAACCTAAAAAAAGGAAG  50

seq1  TCCCTGACGTTATGTAGTTTGTAAATTGGTCTTTTGTTTGTTTGATTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCTGACGTTATGTAGTTTGTAAATTGGTCTTTTGTTTGTTTGATTTTT  100

seq1  GAGACAGGGTTTCTCTGTATAGCCCTATCTGTTCTGAAACTCACTCTGTA  150
      |||||||||||||||||||||||||||| || |  |||||||||||||||
seq2  GAGACAGGGTTTCTCTGTATAGCCCTATTTGATAAGAAACTCACTCTGTA  150

seq1  GACCAGGCTGGCCTG  165
      |||||||||||||||
seq2  GACCAGGCTGGCCTG  165

seq1: chr4_46290048_46291015
seq2: B6Ng01-209G05.g_68_1045

seq1  GAATTCTTAGGGAAAGCAGTCAGCTATAAGCCCCTAGGGATTAAGAGGGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGGAAAGCAGTCAGCTATAAGCCCCTAGGGATTAAGAGGGC  50

seq1  ACTAATGGCCTGTGACAAAGGCAGCAGGATAAACTCGGCTCTGCAGACTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAATGGCCTGTGACAAAGGCAGCAGGATAAACTCGGCTCTGCAGACTA  100

seq1  AACAAGGCTCAAGGGGCCAAGTCAAACAAAGCAGTAGTTTTGCGCTGGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCTCAAGGGGCCAAGTCAAACAAAGCAGTAGTTTTGCGCTGGCC  150

seq1  AACAGGAATGGCCCAGCCTCTCGGGCGGCCAGTCTCTCATCTCACCCTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGGAATGGCCCAGCCTCTCGGGCGGCCAGTCTCTCATCTCACCCTGG  200

seq1  AATCTCCTCTGGTGGCCTTTACCCCTTGTCCCACTGAAGGCTAGACCAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCCTCTGGTGGCCTTTACCCCTTGTCCCACTGAAGGCTAGACCAAA  250

seq1  GCACGTCTGTAATAGTTCTCGCTATGGTCAGCCCCACTTCCTATCATAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACGTCTGTAATAGTTCTCGCTATGGTCAGCCCCACTTCCTATCATAGA  300

seq1  CCACACCTCCTCGCTCTGGCGGTCCATACTTCCTATCATAGACCACGCTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACACCTCCTCGCTCTGGCGGTCCATACTTCCTATCATAGACCACGCTT  350

seq1  CCTGGAGACCACACCTCCAACCCCAGCCACTAGAGGAGGAAACTGCTCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGACCACACCTCCAACCCCAGCCACTAGAGGAGGAAACTGCTCAG  400

seq1  AGAGGAGAGGAAGATACTTGTCCTGGAATCACACGCCAAGTGAAACAACC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAGAGGAAGATACTTGTCCTGGAATCACACGCCAAGTGAAACAACC  450

seq1  TTGGGACCCAAGACCCCTTGATTCCCACTTCACCAAGACCCCAAAAGTCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGACCCAAGACCCCTTGATTCCCACTTCACCAAGACCCCAAAAGTCT  500

seq1  TCCTTAAGTTAGTTTCACACAACTGTGAACATCAGAATAGAGGGAGCTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAAGTTAGTTTCACACAACTGTGAACATCAGAATAGAGGGAGCTGG  550

seq1  GTTCAGGATCTTCTCTGCATGGGGAGGGCGTCGCAAGATTTTCGGGAGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGATCTTCTCTGCATGGGGAGGGCGTCGCAAGATTTTCGGGAGAT  600

seq1  GCCTGAAACCACAGGCAGAACCAAACCTGATAGAAAATATACTTTTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGAAACCACAGGCAGAACCAAACCTGATAGAAAATATACTTTTTCCT  650

seq1  ATATATATAACTATGACAATTTAACTTCTAAATATGCACAGT-AAGAAAT  699
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  ATATATATAACTATGACAATTTAACTTCTAAATATGCACAGTAAAGAAAT  700

seq1  TAACGATGAT-AATGAACCAAGCATAGTAACACCCTCTA-TTCAG-TTAT  746
      |||||||||| |||||||||||||||||||||||||||| ||||| ||||
seq2  TAACGATGATAAATGAACCAAGCATAGTAACACCCTCTATTTCAGTTTAT  750

seq1  GTCTCAAAGCATCTATTGCCCCGTGCATCTTAGGACCCTATATATGTGCA  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTCAAAGCATCTATTGCCCCGTGCATCTTAGGACCCTATATATGTGCA  800

seq1  TACATATAGGCACACAC-ACACACACACACTCAC-ACACACATGCACGCA  844
      ||||||||||||||||| |||||||||||||||| |||||||||||||||
seq2  TACATATAGGCACACACAACACACACACACTCACAACACACATGCACGCA  850

seq1  CGCACACGTATAACTTTTTTTCAAATCCTA-TTTTTAATCATGGTTCTTA  893
      |||||||||||||| ||||||||||||||| |||||||||||||||||||
seq2  CGCACACGTATAAC-TTTTTTCAAATCCTATTTTTTAATCATGGTTCTTA  899

seq1  AAGACTTTAACCTCCCTGCTAGCCC-ACCACCCACTAGAAGTCG-TGGAA  941
      ||||||||||||||||||||||||| |||||||||||||||||| || ||
seq2  AAGACTTTAACCTCCCTGCTAGCCCAACCACCCACTAGAAGTCGTTGTAA  949

seq1  AAGAAAG-AATACGGGGT-GGGGGGTAGC  968
      ||||||| |||||||| | ||||||||||
seq2  AAGAAAGAAATACGGGTTGGGGGGGTAGC  978