BAC Information

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BAC

Clone NameB6Ng01-209J13
Chromosome4 (Build37)
Map Location 80,582,082 - 80,712,122
singlet/doubletdoublet
Overlap geneD4Bwg0951e
Upstream geneTyrp1
Downstream geneMpdz, LOC100040131, LOC100040144, EG668895, LOC100040164, EG545641
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-209J13.bB6Ng01-209J13.g
ACCGA028173GA028174
length1,0931,115
definitionB6Ng01-209J13.b B6Ng01-209J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(80,711,027 - 80,712,122)(80,582,082 - 80,583,183)
sequence
gaattctggggattctaatcctagtcctttggctttcatggcaagtgctg
tccttactcagccgtcttcctggtcccatttttatgcttcctaattccac
cctaaatatttggaaactataattatgcactgctgtatgttgaataacac
gtatagagaattgtgttcaactagaaaagtaagttgatttgtgtctactg
atagcattggaacacatttgcctttccagaattcagaaaatattaataga
aaagaacacagaacttgttttaaaatacatacactaagaattatgaaatt
gtgcattagggaattttgaagatgtttttgtggtaaatataatctagttc
tttgcattctatacggtagtatataccttcctcctcatttcatatagaaa
gaagaataatcagtacataggtagtgctaatggatttggatccatgtgca
ttttcttcaaagcatccatccttgacaactagacttgcgtctgtaagaaa
aaagaaaattaaaataaatttttactaacaggggatatatatgtcttctg
acctcctaagaagaaaggtagaaagcatcatcctacagtgttaattaaat
acattaaaaggcaattttatattattaaatgagccagcattaagacagca
agtggagagatccctagaattctttttgagctgcccattgttctagtttc
atttctgtggctgtcataaacatcttgggcactatcaatggctgtacaat
actctgggagaaagaaataatttagagctctattgttttgggtgctaagg
attgccttagaagaatacagccacatagctactacaaatggagaaaagga
caataataaaacataaggactataaatggaattgaagaaaagtaaagctt
atataaatagttcatgctataaaagttttatgagacaaatgaaatttgac
aagtataataattttcaactaaaaataaattcctaattgcattaaaatcc
aagcattttagacccattatatctaaaagatattgataaaaatctgtgac
ttccaatatactacttcctccctccatacttcatatatatata

gaattctccttgttcctactccaaagatgtgtttatttagttattcttgg
agtattaagttcagtgtgtgaaaaaaaaagttcagtgtgtgtctgtgctg
ggcaattgttgttttgttatatgaacaaaaggtgaagaataaataaacta
agatgaacgatgggctgaaggcaagggacacaaacttaatggtcatgtgc
taagccactgtcatgttttctacctgcctgcttcttctgcattatctgca
ctgtacctaaactacctgtgtgtgagtgcgttctcagaagagtcttctca
accgctatcagatgataccatcaaagaacttattttttccaaacaggcaa
agaatagtaaagacagacccaaaacaagctttttttgaggacttataagg
ctcagtgattgcagccattagaatggaaagggtggatgaaggaagactcc
aagggccagagttccagtgaactagaagaaaagcacttggaaaagttctc
caggaatcatcttgccctcttcctctttcttccatgcccccttttaattc
attgcagctgggatttagaaaacccagttcccccattgagctctcttatg
ttttgtaaatattttcgttgggtcccagcatgattgttctgtggcttctg
tctggctttgttcatggaggccattcacccagagcccttgcaagacaagc
taggctacaaaagacatttttaaattctaccccctgaacttggacttcta
tttagaagggaaagtttgaaggattcttggagtagatttagttatttgat
taaaacactacagtgtgcacttaagaacaataaacaactacagtttgaag
ttaggcacactttaaaaataaagatatatccatttttttaaatttgatgt
gtatgaaagttctggcctgtatatgtgtaaatgcagtgcatgtatgccct
gatgatcatgaaaggtcaaaagaagatagccttggggtcccctgggtcct
gggaattagaggtggttgtgagctgcccatggtggggtgctggaatagaa
cctcaggcccttctggtagagcaccctggtgtcttaacattgaggccatt
ctctccagctccctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_80711027_80712122
seq2: B6Ng01-209J13.b_45_1137 (reverse)

seq1  TATATATATATGGAGGTATGGAGGGGAGGGAGGTAGTATATTGGAAGTCA  50
      ||||||||||| || ||||||||||   ||| ||||||||||||||||||
seq2  TATATATATAT-GAAGTATGGAGGG--AGGAAGTAGTATATTGGAAGTCA  47

seq1  CAGATTTTTATCAATATTCCTTTTAGATATAATGGGTCTTAAATGCTTGG  100
      |||||||||||||||||  |||||||||||||||||||| ||||||||||
seq2  CAGATTTTTATCAATAT--CTTTTAGATATAATGGGTCTAAAATGCTTGG  95

seq1  ATTTTAATGCAATTAGGAATTTA-TTTTAG-TGAAAATTATTATACTTGT  148
      ||||||||||||||||||||||| |||||| |||||||||||||||||||
seq2  ATTTTAATGCAATTAGGAATTTATTTTTAGTTGAAAATTATTATACTTGT  145

seq1  CAAATTTCATTTGTCTCATAAAACTTTTATAGCCTGAACTATTTATATAA  198
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  CAAATTTCATTTGTCTCATAAAACTTTTATAGCATGAACTATTTATATAA  195

seq1  GCTTTACTTTTCTTCAATTCCATTTATAGTCCTTATGTTTTATTATTGTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTACTTTTCTTCAATTCCATTTATAGTCCTTATGTTTTATTATTGTC  245

seq1  CTTTTCTCCATTTGTAGTAGCTATGTGGCTGTATTCTTCTAAGGCAATCC  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTCTCCATTTGTAGTAGCTATGTGGCTGTATTCTTCTAAGGCAATCC  295

seq1  TTAGCACCCAAAACAATAGAGCTCTAAATTATTTCTTTCTCCCAGAGTAT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCACCCAAAACAATAGAGCTCTAAATTATTTCTTTCTCCCAGAGTAT  345

seq1  TGTACAGCCATTGATAGTGCCCAAGATGTTTATGACAGCCACAGAAATGA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACAGCCATTGATAGTGCCCAAGATGTTTATGACAGCCACAGAAATGA  395

seq1  AACTAGAACAATGGGCAGCTCAAAAAGAATTCTAGGGATCTCTCCACTTG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAGAACAATGGGCAGCTCAAAAAGAATTCTAGGGATCTCTCCACTTG  445

seq1  CTGTCTTAATGCTGGCTCATTTAATAATATAAAATTGCCTTTTAATGTAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCTTAATGCTGGCTCATTTAATAATATAAAATTGCCTTTTAATGTAT  495

seq1  TTAATTAACACTGTAGGATGATGCTTTCTACCTTTCTTCTTAGGAGGTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAACACTGTAGGATGATGCTTTCTACCTTTCTTCTTAGGAGGTCA  545

seq1  GAAGACATATATATCCCCTGTTAGTAAAAATTTATTTTAATTTTCTTTTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACATATATATCCCCTGTTAGTAAAAATTTATTTTAATTTTCTTTTT  595

seq1  TCTTACAGACGCAAGTCTAGTTGTCAAGGATGGATGCTTTGAAGAAAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTACAGACGCAAGTCTAGTTGTCAAGGATGGATGCTTTGAAGAAAATG  645

seq1  CACATGGATCCAAATCCATTAGCACTACCTATGTACTGATTATTCTTCTT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGGATCCAAATCCATTAGCACTACCTATGTACTGATTATTCTTCTT  695

seq1  TCTATATGAAATGAGGAGGAAGGTATATACTACCGTATAGAATGCAAAGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATATGAAATGAGGAGGAAGGTATATACTACCGTATAGAATGCAAAGA  745

seq1  ACTAGATTATATTTACCACAAAAACATCTTCAAAATTCCCTAATGCACAA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGATTATATTTACCACAAAAACATCTTCAAAATTCCCTAATGCACAA  795

seq1  TTTCATAATTCTTAGTGTATGTATTTTAAAACAAGTTCTGTGTTCTTTTC  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCATAATTCTTAGTGTATGTATTTTAAAACAAGTTCTGTGTTCTTTTC  845

seq1  TATTAATATTTTCTGAATTCTGGAAAGGCAAATGTGTTCCAATGCTATCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAATATTTTCTGAATTCTGGAAAGGCAAATGTGTTCCAATGCTATCA  895

seq1  GTAGACACAAATCAACTTACTTTTCTAGTTGAACACAATTCTCTATACGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACACAAATCAACTTACTTTTCTAGTTGAACACAATTCTCTATACGT  945

seq1  GTTATTCAACATACAGCAGTGCATAATTATAGTTTCCAAATATTTAGGGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTCAACATACAGCAGTGCATAATTATAGTTTCCAAATATTTAGGGT  995

seq1  GGAATTAGGAAGCATAAAAATGGGACCAGGAAGACGGCTGAGTAAGGACA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTAGGAAGCATAAAAATGGGACCAGGAAGACGGCTGAGTAAGGACA  1045

seq1  GCACTTGCCATGAAAGCCAAAGGACTAGGATTAGAATCCCCAGAATTC  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTTGCCATGAAAGCCAAAGGACTAGGATTAGAATCCCCAGAATTC  1093


seq1: chr4_80582082_80583183
seq2: B6Ng01-209J13.g_66_1180

seq1  GAATTCTCCTTGTTCCTACTCCAAAGATGTGTTTATTTAGTTATTCTTGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTGTTCCTACTCCAAAGATGTGTTTATTTAGTTATTCTTGG  50

seq1  AGTATTAAGTTCAGTGTGTGAAAAAAAAAGTTCAGTGTGTGTCTGTGCTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTAAGTTCAGTGTGTGAAAAAAAAAGTTCAGTGTGTGTCTGTGCTG  100

seq1  GGCAATTGTTGTTTTGTTATATGAACAAAAGGTGAAGAATAAATAAACTA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAATTGTTGTTTTGTTATATGAACAAAAGGTGAAGAATAAATAAACTA  150

seq1  AGATGAACGATGGGCTGAAGGCAAGGGACACAAACTTAATGGTCATGTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAACGATGGGCTGAAGGCAAGGGACACAAACTTAATGGTCATGTGC  200

seq1  TAAGCCACTGTCATGTTTTCTACCTGCCTGCTTCTTCTGCATTATCTGCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCCACTGTCATGTTTTCTACCTGCCTGCTTCTTCTGCATTATCTGCA  250

seq1  CTGTACCTAAACTACCTGTGTGTGAGTGCGTTCTCAGAAGAGTCTTCTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACCTAAACTACCTGTGTGTGAGTGCGTTCTCAGAAGAGTCTTCTCA  300

seq1  ACCGCTATCAGATGATACCATCAAAGAACTTATTTTTTCCAAACAGGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGCTATCAGATGATACCATCAAAGAACTTATTTTTTCCAAACAGGCAA  350

seq1  AGAATAGTAAAGACAGACCCAAAACAAGCTTTTTTTGAGGACTTATAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATAGTAAAGACAGACCCAAAACAAGCTTTTTTTGAGGACTTATAAGG  400

seq1  CTCAGTGATTGCAGCCATTAGAATGGAAAGGGTGGATGAAGGAAGACTCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTGATTGCAGCCATTAGAATGGAAAGGGTGGATGAAGGAAGACTCC  450

seq1  AAGGGCCAGAGTTCCAGTGAACTAGAAGAAAAGCACTTGGAAAAGTTCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGCCAGAGTTCCAGTGAACTAGAAGAAAAGCACTTGGAAAAGTTCTC  500

seq1  CAGGAATCATCTTGCCCTCTTCCTCTTTCTTCCATGCCCCCTTTTAATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGAATCATCTTGCCCTCTTCCTCTTTCTTCCATGCCCCCTTTTAATTC  550

seq1  ATTGCAGCTGGGATTTAGAAAACCCAGTTCCCCCATTGAGCTCTCTTATG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGCTGGGATTTAGAAAACCCAGTTCCCCCATTGAGCTCTCTTATG  600

seq1  TTTTGTAAATATTTTCGTTGGGTCCCAGCATGATTGTTCTGTGGCTTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAAATATTTTCGTTGGGTCCCAGCATGATTGTTCTGTGGCTTCTG  650

seq1  TCTGGCTTTGTTCATGGAGGCCATTCACCCAGAGCCCTTGCAAGACAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGGCTTTGTTCATGGAGGCCATTCACCCAGAGCCCTTGCAAGACAAGC  700

seq1  TAGGCTACAAAAGACATTTTTAAATTCTACCCCCTGAACTTGGACTTCTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTACAAAAGACATTTTTAAATTCTACCCCCTGAACTTGGACTTCTA  750

seq1  TTTAGAAGGGAAAGTTTGAAGGATTCTTGGAGTAGATTTAGTTATTTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGAAGGGAAAGTTTGAAGGATTCTTGGAGTAGATTTAGTTATTTGAT  800

seq1  TAAAACACTACAGTGTGCACTTAAGAACAATAAACAACTACAGTTTGAAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAACACTACAGTGTGCACTTAAGAACAATAAACAACTACAGTTTGAAG  850

seq1  TTAGG-ACACTTTAAAAATAAAGATATATCCA-TTTTTTAAATTTGATGT  898
      ||||| |||||||||||||||||||||||||| |||||||||||||||||
seq2  TTAGGCACACTTTAAAAATAAAGATATATCCATTTTTTTAAATTTGATGT  900

seq1  GTATGAAAGTTCT-GCCTGTATATGTGTAAATGCAGTGCATGTATG-CCT  946
      ||||||||||||| |||||||||||||||||||||||||||||||| |||
seq2  GTATGAAAGTTCTGGCCTGTATATGTGTAAATGCAGTGCATGTATGCCCT  950

seq1  GATGATCATG-AAGGTCAAAAGAAGATAGCCTT-GGGTCCCCTGGGTC--  992
      |||||||||| |||||||||||||||||||||| ||||||||||||||  
seq2  GATGATCATGAAAGGTCAAAAGAAGATAGCCTTGGGGTCCCCTGGGTCCT  1000

seq1  TGGAATTAGAGGTGGTTGTGAGCTG-CCATG--TGGGTGCTGGGAATAGA  1039
       |||||||||||||||||||||||| |||||   ||||||| ||||||||
seq2  GGGAATTAGAGGTGGTTGTGAGCTGCCCATGGTGGGGTGCT-GGAATAGA  1049

seq1  A-CTCAGGCCC-TCTGGAAGAGCAACCTGTGTTCTTAACCATTGA-GCCA  1086
      | ||||||||| ||||| |||||| ||||   |||||| |||||| ||||
seq2  ACCTCAGGCCCTTCTGGTAGAGCACCCTGGTGTCTTAA-CATTGAGGCCA  1098

seq1  -TCTCTCCAGCTCCCTC  1102
       ||||||||||||||||
seq2  TTCTCTCCAGCTCCCTC  1115


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