BAC Information

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BAC

Clone NameB6Ng01-210P23
Chromosome4 (Build37)
Map Location 6,530,434 - 6,705,719
singlet/doubletdoublet
Overlap geneTox
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1, Sdcbp, Nsmaf, LOC100039397, LOC100039414
Downstream geneLOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-210P23.bB6Ng01-210P23.g
ACCGA029189GA029190
length703888
definitionB6Ng01-210P23.b B6Ng01-210P23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,530,434 - 6,531,136)(6,704,834 - 6,705,719)
sequence
gaattcaagatcagatgaactgatatcagatgttataacagatcctttct
gaaaggaatgtccatttattgtttttcaaaagtagccacatttctctgaa
gaacattttgagtgcttgagcacctgtggaccccgcattctctcctttct
agtgtaaaacagaagaaaagaaaagctaagaatgaattcttttttttttt
atttttctttttttttccatttttattaggtatttagctcatttacattt
ctaatgctataccaaaagtcccccatacccacccacccccactcccctac
ccacccacttcccctttttggccctggcattcccctgtactggggcatat
aaagtttgcgtgtccaatgggcctctctttccagtgatggccgactaggc
catcttttgatacatatgcagctagagtcaagagctccggggtactggtt
agttcataatgttgttccacctatagggttgcagatccctttagctcctt
gggtactttctctagctcctccattgggagccctgtgatccatccattag
ctgactgtgagcattcacttctgtgtttgctaggccctggcatagtgtca
caagagacagctacatctgggtcctttctataaaatcttgctagtgtatg
caatggtgtcagcgtttggatgctgattatggggtggatccttggatatg
gca

gaattcttcgcggttcaactacctggtatcgtattaaaacatatattgct
catttattttgtttggtttggtttggttttggtgttgtacacaaactgca
agggacagcctgtgtaaatgtttttttcatgagggaacaaatactgtggt
gggatttttggattgaaaactgtctgtggctgtagtcggtttacctaaca
catagtctgtgtgttgtcctaatttacactgacactgcttgcacatggct
gtttgctttccctaacttcatcaaagtttggatttttgccaatctgattg
tcacacaaacttgacaatataattgtagttatacaaattgcttcctatca
ttaagaaccctttgggggcaaattcgttaaaaatcatcctagagttgagg
aggtaggatactgtttaaccttttctgtaggctctctggccaactccata
gttgaatctatttcaggcccctgttctgtgttctgtttattcctgcacta
actctgcccgtgtggtttccttgaagcatttcaatgcttttagtatctct
tagttctaagccttcttcgttgttcttcttggctacttctgtaaatactg
atacttgtgcattctgaccaatgatcgaagcccctacatcaaaacagtgg
tgcagccccactgtctacctcgctgggtaccatactatgtactatgcttt
taaacagacctgtagaaaactgctctgggtgttattcaggctcctcttca
aggtcggaaaacagaagtccagttttcagttttcttttgtaacctttcaa
cagtgttttaatatgttttctttataagtccttacaagttctgtgagatg
tattgctagctactcatgaaatggttcatgtttatgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6530434_6531136
seq2: B6Ng01-210P23.b_48_750

seq1  GAATTCAAGATCAGATGAACTGATATCAGATGTTATAACAGATCCTTTCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAGATCAGATGAACTGATATCAGATGTTATAACAGATCCTTTCT  50

seq1  GAAAGGAATGTCCATTTATTGTTTTTCAAAAGTAGCCACATTTCTCTGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAATGTCCATTTATTGTTTTTCAAAAGTAGCCACATTTCTCTGAA  100

seq1  GAACATTTTGAGTGCTTGAGCACCTGTGGACCCCGCATTCTCTCCTTTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACATTTTGAGTGCTTGAGCACCTGTGGACCCCGCATTCTCTCCTTTCT  150

seq1  AGTGTAAAACAGAAGAAAAGAAAAGCTAAGAATGAATTCTTTTTTTTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAAAACAGAAGAAAAGAAAAGCTAAGAATGAATTCTTTTTTTTTTT  200

seq1  ATTTTTCTTTTTTTTTCCATTTTTATTAGGTATTTAGCTCATTTACATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTCTTTTTTTTTCCATTTTTATTAGGTATTTAGCTCATTTACATTT  250

seq1  CTAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATGCTATACCAAAAGTCCCCCATACCCACCCACCCCCACTCCCCTAC  300

seq1  CCACCCACTTCCCCTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCACTTCCCCTTTTTGGCCCTGGCATTCCCCTGTACTGGGGCATAT  350

seq1  AAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTGCGTGTCCAATGGGCCTCTCTTTCCAGTGATGGCCGACTAGGC  400

seq1  CATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGGTACTGGTT  450

seq1  AGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTTAGCTCCTT  500

seq1  GGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCATCCATTAG  550

seq1  CTGACTGTGAGCATTCACTTCTGTGTTTGCTAGGCCCTGGCATAGTGTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGTGAGCATTCACTTCTGTGTTTGCTAGGCCCTGGCATAGTGTCA  600

seq1  CAAGAGACAGCTACATCTGGGTCCTTTCTATAAAATCTTGCTAGTGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAGACAGCTACATCTGGGTCCTTTCTATAAAATCTTGCTAGTGTATG  650

seq1  CAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCTTGGATATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGGTGTCAGCGTTTGGATGCTGATTATGGGGTGGATCCTTGGATATG  700

seq1  GCA  703
      |||
seq2  GCA  703


seq1: chr4_6704834_6705719
seq2: B6Ng01-210P23.g_64_951 (reverse)

seq1  AACATAAAACAT-AACCA-TTCATGAGTAGCTAGCAATACATCTCACAGA  48
      ||||| |||||| ||||| |||||||||||||||||||||||||||||||
seq2  AACAT-AAACATGAACCATTTCATGAGTAGCTAGCAATACATCTCACAGA  49

seq1  ACTTGTAAGACCTTATAAAGAAAACATATTAAAACACTGTTG-AAGGTTA  97
      |||||||||  ||||||||||||||||||||||||||||||| |||||||
seq2  ACTTGTAAGGACTTATAAAGAAAACATATTAAAACACTGTTGAAAGGTTA  99

seq1  CAAAAGAAAACTGAAAACTGGACTTCTGTTTTCCGACCTTGAAGAGGAGC  147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGAAAACTGAAAACTGGACTTCTGTTTTCCGACCTTGAAGAGGAGC  149

seq1  CTGAATAACACCCAGAGCAGTTTTCTACAGGTCTGTTTAAAAGCATAGTA  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATAACACCCAGAGCAGTTTTCTACAGGTCTGTTTAAAAGCATAGTA  199

seq1  CATAGTATGGTACCCAGCGAGGTAGACAGTGGGGCTGCACCACTGTTTTG  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGTATGGTACCCAGCGAGGTAGACAGTGGGGCTGCACCACTGTTTTG  249

seq1  ATGTAGGGGCTTCGATCATTGGTCAGAATGCACAAGTATCAGTATTTACA  297
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGGGGCTTCGATCATTGGTCAGAATGCACAAGTATCAGTATTTACA  299

seq1  GAAGTAGCCAAGAAGAACAACGAAGAAGGCTTAGAACTAAGAGATACTAA  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTAGCCAAGAAGAACAACGAAGAAGGCTTAGAACTAAGAGATACTAA  349

seq1  AAGCATTGAAATGCTTCAAGGAAACCACACGGGCAGAGTTAGTGCAGGAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATTGAAATGCTTCAAGGAAACCACACGGGCAGAGTTAGTGCAGGAA  399

seq1  TAAACAGAACACAGAACAGGGGCCTGAAATAGATTCAACTATGGAGTTGG  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACAGAACACAGAACAGGGGCCTGAAATAGATTCAACTATGGAGTTGG  449

seq1  CCAGAGAGCCTACAGAAAAGGTTAAACAGTATCCTACCTCCTCAACTCTA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGAGCCTACAGAAAAGGTTAAACAGTATCCTACCTCCTCAACTCTA  499

seq1  GGATGATTTTTAACGAATTTGCCCCCAAAGGGTTCTTAATGATAGGAAGC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATGATTTTTAACGAATTTGCCCCCAAAGGGTTCTTAATGATAGGAAGC  549

seq1  AATTTGTATAACTACAATTATATTGTCAAGTTTGTGTGACAATCAGATTG  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTGTATAACTACAATTATATTGTCAAGTTTGTGTGACAATCAGATTG  599

seq1  GCAAAAATCCAAACTTTGATGAAGTTAGGGAAAGCAAACAGCCATGTGCA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAATCCAAACTTTGATGAAGTTAGGGAAAGCAAACAGCCATGTGCA  649

seq1  AGCAGTGTCAGTGTAAATTAGGACAACACACAGACTATGTGTTAGGTAAA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAGTGTCAGTGTAAATTAGGACAACACACAGACTATGTGTTAGGTAAA  699

seq1  CCGACTACAGCCACAGACAGTTTTCAATCCAAAAATCCCACCACAGTATT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGACTACAGCCACAGACAGTTTTCAATCCAAAAATCCCACCACAGTATT  749

seq1  TGTTCCCTCATGAAAAAAACATTTACACAGGCTGTCCCTTGCAGTTTGTG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCCTCATGAAAAAAACATTTACACAGGCTGTCCCTTGCAGTTTGTG  799

seq1  TACAACACCAAAACCAAACCAAACCAAACAAAATAAATGAGCAATATATG  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACACCAAAACCAAACCAAACCAAACAAAATAAATGAGCAATATATG  849

seq1  TTTTAATACGATACCAGGTAGTTGAACCGCGAAGAATTC  886
      |||||||||||||||||||||||||||||||||||||||
seq2  TTTTAATACGATACCAGGTAGTTGAACCGCGAAGAATTC  888


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