BAC Information

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BAC

Clone NameB6Ng01-211H05
Chromosome4 (Build37)4 (Build37)
Map Location 115,727,721 - 115,727,93161,113,817 - 61,115,029
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneTal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12, LOC546842, Cyp4a12b, LOC435802, LOC666393, LOC230641, Cyp4a14, Cyp4a10, LOC666168, LOC631037, LOC100040843, Cyp4b1, LOC546843, 4732418C07Rik, 4930544O15Rik, Atpaf1, Mobkl2c, Mknk1, Kncn, 6430628N08Rik, Dmbx1, Faah, Nsun4
Downstream geneUqcrh, Lrrc41, Rad54l, 1520402A15Rik, Pomgnt1, Tspan1, 1700042G07Rik, LOC433748, Pik3r3, Mast2, LOC631400, Ipp, Tmem69, Gpbp1l1, LOC622665, Nasp, Akr1a4, Prdx1, Mmachc, 0610037D15Rik, Tesk2, Toe1, Mutyh, Hpdl, LOC625336, LOC100041048, Zswim5, Urod, Hectd3, Eif2b3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211H05.bB6Ng01-211H05.g
ACCGA029515GA029516
length2461,066
definitionB6Ng01-211H05.b B6Ng01-211H05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(115,727,721 - 115,727,931)(61,113,817 - 61,115,029)
sequence
gaattcttctatggatgtaaactcttttttgtttctttttttatacttct
tgttttttttttaagattttatttttattatttattatatgtaagtacac
tgtagctgtcttcagacactccagaagggggagtcagatctcgttacgga
tggttgtgagccaccatgtggttgctgggatttgaactctggacctttgg
aagagcagtcgggtgctcttacctgctgagccatctcaccagcccc
gaattccttagcttttaaactccatactgtgtaagtgagatgctcctagc
tgagaaacatgaaaggaaaacctggtatggtctcatgcctacaaacactt
gggattgggggaagagatgcctctcagtatgcacatgtgtacacacatac
taagtctgtatccaaatctagaatgcttcatgtgacactgatccaggatc
tcataacaggttgtttttcaaaagtcagagacaggagttggtgacaggaa
ttaattcactaagagttctataatgggagatcagagatacttctgaagcc
acattaatgagacagtacatcacaagttaagattatgtgattatgaatta
agtttttattagtagttgttagccaaataaatccacccctttgtacttcc
attttcctgcagtaaaggctataataataattctcctgtgtggtactggg
aaccatatcaggctccgttacagagtgctaatttgaggcagatggtggaa
atctggctggtaatctagaccactggctgaagttcagcattggtgaaact
tagaagtagttgcagttgttctaaggatgagaagtgattgtcgttttcta
gttttaaaataataggcaatttgtgattgctaaagcatcagatataaagg
aaataatgtaaataaaatcctttagctaatttttccaaaatagtcaaaag
ttaaatgggatcagaaactggagatatgtatagtgtagtggggcatgaag
ccagccagttcaaaataccttactcaccagttcactctgttttatagtat
agattaagagtgctccaaagtatttttagttggtgacaatacagaaaagg
ctggtaatattctgtgacatgtgtgtatataaaatgtctatccacaagat
gattagtaaaccttaataccttttagtgtgtgtgtgtgtgctttagtctg
aactcaggaacttgaacctactagtcaaattagcacatctaatagctaac
caccctgtgctgcagtggataagtaggggatatagatctattggatactg
cctgtggctagactgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_115727721_115727931
seq2: B6Ng01-211H05.b_69_288

seq1  TTTTGTTTCTTTTTTT-TTTTAAGAATTTTTTTTTTAAGA-------TTT  42
      |||||||||||||||| |  |     ||||||||||||||       |||
seq2  TTTTGTTTCTTTTTTTATACTTCTTGTTTTTTTTTTAAGATTTTATTTTT  50

seq1  ATTTATTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAA  92
      |||  |||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTATTATATGTAAGTACACTGTAGCTGTCTTCAGACACTCCAGAA  100

seq1  GAGGGAGTCAGATCTCATTACAGATAGTTGTGAGCCACCATGTGGTTGCT  142
      | |||||||||||||| |||| ||| ||||||||||||||||||||||||
seq2  GGGGGAGTCAGATCTCGTTACGGATGGTTGTGAGCCACCATGTGGTTGCT  150

seq1  GGGATTTGAACTCAGGACCTTTGGAAGAGCAGTC-AGTGCTCTTAACCGC  191
      ||||||||||||| ||||||||||||||||||||  ||||||||| | ||
seq2  GGGATTTGAACTCTGGACCTTTGGAAGAGCAGTCGGGTGCTCTTACCTGC  200

seq1  TCAGCCATCTCACCAGCCCC  211
      | ||||||||||||||||||
seq2  TGAGCCATCTCACCAGCCCC  220

seq1: chr4_61113817_61115029
seq2: B6Ng01-211H05.g_62_1127

seq1  GAATTCCTTAGCTTTTAAACTCCATACTGTGTAAGTGAGATGCTCCTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTAGCTTTTAAACTCCATACTGTGTAAGTGAGATGCTCCTAGC  50

seq1  TGAGAAACATGAAAGGAAAACCTGGTATGGTCTCATGCCTACAAACACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAACATGAAAGGAAAACCTGGTATGGTCTCATGCCTACAAACACTT  100

seq1  GGGATTGGGGGAAGAGATGCCTCTCAGTATGCACATGTGTACACACATAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGATTGGGGGAAGAGATGCCTCTCAGTATGCACATGTGTACACACATAC  150

seq1  TAAGTCTGTATCCAAATCTAGAATGCTTCATGTGACACTGATCCAGGATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTCTGTATCCAAATCTAGAATGCTTCATGTGACACTGATCCAGGATC  200

seq1  TCATAACAGGTTGTTTTTCAAAAGTCAGAGACAGGAGTTGGTGACAGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAACAGGTTGTTTTTCAAAAGTCAGAGACAGGAGTTGGTGACAGGAA  250

seq1  TTAATTCACTAAGAGTTCTATAATGGGAGATCAGAGATACTTCTGAAGCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTCACTAAGAGTTCTATAATGGGAGATCAGAGATACTTCTGAAGCC  300

seq1  ACATTAATGAGACAGTACATCACAAGTTAAGATTATGTGATTATGAATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTAATGAGACAGTACATCACAAGTTAAGATTATGTGATTATGAATTA  350

seq1  AGTTTTTATTAGTAGTTGTTAGCCAAATAAATCCACCCCTTTGTACTTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTTTATTAGTAGTTGTTAGCCAAATAAATCCACCCCTTTGTACTTCC  400

seq1  ATTTTCCTGCAGTAAAGGCTATAATAATAATTCTCCTGTGTGGTACTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCCTGCAGTAAAGGCTATAATAATAATTCTCCTGTGTGGTACTGGG  450

seq1  AACCATATCAGGCTCCGTTACAGAGTGCTAATTTGAGGCAGATGGTGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATATCAGGCTCCGTTACAGAGTGCTAATTTGAGGCAGATGGTGGAA  500

seq1  ATCTGGCTGGTAATCTAGACCACTGGCTGAAGTTCAGCATTGGTGAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGCTGGTAATCTAGACCACTGGCTGAAGTTCAGCATTGGTGAAACT  550

seq1  TAGAAGTAGTTGCAGTTGTTCTAAGGATGAGAAGTGATTGTCGTTTTCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGTAGTTGCAGTTGTTCTAAGGATGAGAAGTGATTGTCGTTTTCTA  600

seq1  GTTTTAAAATAATAGGCAATTTGTGATTGCTAAAGCATCAGATATAAAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAAAATAATAGGCAATTTGTGATTGCTAAAGCATCAGATATAAAGG  650

seq1  AAATAATGTAAATAAAATCCTTTAGCTAATTTTTCCAAAATAGTCAAAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGTAAATAAAATCCTTTAGCTAATTTTTCCAAAATAGTCAAAAG  700

seq1  TTAAATGGGATCAGAAACTGGAGATATGTATAGTGTAGTGGGGCATGAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATGGGATCAGAAACTGGAGATATGTATAGTGTAGTGGGGCATGAAG  750

seq1  CCAGCCAGTTCAAAATACCTTACTCACCAGTTCACTCTGTTTTATAGTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCAGTTCAAAATACCTTACTCACCAGTTCACTCTGTTTTATAGTAT  800

seq1  AGATTAAGAGTGCTCCAAAGTATTTTTAGTTGGTGACAATACAGAAAAGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTAAGAGTGCTCCAAAGTATTTTTAGTTGGTGACAATACAGAAAAGG  850

seq1  CTGGTAATATTCTGTGACATGTGTGTATATAAAATGTCTATCCACAAGAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAATATTCTGTGACATGTGTGTATATAAAATGTCTATCCACAAGAT  900

seq1  GATTAGTAAACCTTAATACC-TTTAGTGTGTGTGTGTGTTGCTTTAGTCT  949
      |||||||||||||||||||| ||||||||||||||||| |||||||||||
seq2  GATTAGTAAACCTTAATACCTTTTAGTGTGTGTGTGTG-TGCTTTAGTCT  949

seq1  GAACTCAGGAACTTGAACCTACTAGTCAAATTAGCACCATCTAATAGCTA  999
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  GAACTCAGGAACTTGAACCTACTAGTCAAATTAGCA-CATCTAATAGCTA  998

seq1  A-CACCCTGTGGCCTGCAAGTGGGATAAGTAGGGGGATATAGAATCTATT  1048
      | |||||||||  |||| ||| ||||||||| |||||||||| |||||||
seq2  ACCACCCTGTG--CTGC-AGT-GGATAAGTA-GGGGATATAG-ATCTATT  1042

seq1  TGATACTGCCTGGTGGCTAGCACTGTTACGCATCGCTCAGGGTTTAGCAG  1098
       |||||||||| |||||||| |||||                        
seq2  GGATACTGCCT-GTGGCTAG-ACTGT------------------------  1066

seq1  CAGATAATTTGTTAAAACAAACTTACGAAAGATAGAAACATGTTGCTTGA  1148
                                                        
seq2  --------------------------------------------------  1066

seq1  AGCTGCTGAGGGAGGTAGGTAAGCCTAGGAGAGGATGAGAGAGTGGTGCT  1198
                                                        
seq2  --------------------------------------------------  1066

seq1  CCTGTGGCTTACTGT  1213
                     
seq2  ---------------  1066