BAC Information

Click to search

BAC

Clone NameB6Ng01-211M01
Chromosome4 (Build37)4 (Build37)
Map Location 146,092,977 - 146,093,704145,761,381 - 145,762,373
singlet/doubletsingletsinglet
Overlap geneMGC117846
Upstream geneLOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik, LOC236069, LOC384084, LOC666386, LOC666390, LOC100041433, LOC433790, LOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445
Downstream geneOTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581, EG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673, 2610305D13Rik, LOC666618, LOC100043100
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211M01.bB6Ng01-211M01.g
ACCGA029728GA029729
length1,117991
definitionB6Ng01-211M01.b B6Ng01-211M01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(146,092,977 - 146,093,704)(145,761,381 - 145,762,373)
sequence
gaattcatcagagaattcatacaggagagaaaccttacaaatgcagtgaa
tgtggcaaatgctttactgaaaaaagcagtctgagaattcatcagagaat
tcatacaggacagaaaccttacaaatgcagtgaatgtggcaaatgcttta
cccaacaatccaatcttagtattcatcagagaattcatacaggagagaaa
ccttacaaatgcagtgaatgtgacaaatgctttacccaacaatccaatct
tagtattcatcagagaattcatacaggagagaaaccttacaaatgcagtg
aatgtgacaaatgcttttcccgaaaattccatcttggtattcatcagaga
attcatacaggagagaatccttataaatgtagtgaatgtaacaaatgctt
tacccaaaattcctatcttaatattcatcagagaattcatgcaggagaga
aaccttacaaatgcagtgaatgtgacaaatgctttactgaaaaaggcagt
ctgacaattcatcagagaattcatacaggagagaaaccttacaaatgtag
tgaatgtgacaaatgcttttcccgaaaattccatcttggtattcatcaga
gaattcatacaagagagaaacctcacaaatgtagtgaatgtgacaaatgc
tttacccagaaatcccatcttagtattcatcagaaaattcatacaagaga
gaaaccttacaaatagattgtatgtgacaaatacaatactcacaatgtca
gtctgagaaatcatcagttatttcatgcagtagagaatctttataaatga
agtgaacgagacaatcctttaccaagatatatcatctcaaaattcattag
agaatacttagagaagacaaacttttcaaatatattgtaggtatgaatcc
ttccttttggcctaattcctagaatataacagtgaatatacttacaggct
agaaacttagctcatgcattgtatgagaaatagctttgacttcatttcag
tcagaagagacatctagaactttttagggtaaagtatttctgttacggaa
aatgtgaattcttgacaaacacttgaaggctccacacctaagaattagca
tgattatgaaaatcttg
gaattcattctgaccttgtaaatactattactgaagaaagttggttcgac
gttgctaacactggaggctcagggcttggtcagttgttcattgacctttg
ttttctctcttgtgaaatatttctcttggcatttgacgggtatatgaatg
atctctttcaatgccccagcctgagaaatatagattgacaatgggaaaaa
aaagcagatgatcgagtaccatagaaagtgatagaaaatgaatgagaatt
gacaagggaaatattgatttcctaggaacaataaacactaggccagggaa
taatcaagagcagaaacccaggctctcagtgttccttctagcactttctc
aggaataatcaaatgctgcaccaaattcacaaatttcttctgaaaaatcc
cacaaaaaaaatgtacagataaaacagtgcagaacacagaaagaagggga
atatggtacagttatcacacaaagctgaccttacctgggtccaaaagcaa
ataaccacgaaaacatgcacacaaaaaataataatagtatgggtgcacca
gtgcaacatttaaaaagtttctctctaatagatgcagaaagtaaactcaa
cttgatttcatgccagagactcaaaactgtttcaacaagcacaaaccaaa
caactcaaggcataaactataatcagtgggagaaagctcacaaccatgtc
aatatatctatgaaaggcctagagcaaaatatcacagtgcatcactatga
aagctgtgaagaatgtggaacagaaagaacattactgagtctaatgagga
taatagccaacatcctaagcctatcactgcacaaactgaagacagctgtc
atcattctactctactcagaagacaaacaaggatgtgcaaagcctccatg
ctaattgatcacgatatggcagtgcttacaaagagctagtaagacttcag
aatattcttcaatgatcaagaagatcagaggaaggtagttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146092977_146093704
seq2: B6Ng01-211M01.b_434_1160

seq1  ACAAATGCTTTACCAAACCATCCCATCTTAGTATTCATCAGAGAATTCAT  50
      |||||||||||||| ||   ||| |||||| |||||||||||||||||||
seq2  ACAAATGCTTTACCCAAAATTCCTATCTTAATATTCATCAGAGAATTCAT  50

seq1  ACAGGAGAGAAACCTTACAAATGCAGTGAATGTGAAAAATGCTTTAATGA  100
       |||||||||||||||||||||||||||||||||| |||||||||| |||
seq2  GCAGGAGAGAAACCTTACAAATGCAGTGAATGTGACAAATGCTTTACTGA  100

seq1  AAAAAACATTCTGAAAATTCATCAGAGAATTCATACAGGAGAGAGACCTT  150
      ||||  || ||||| ||||||||||||||||||||||||||||| |||||
seq2  AAAAGGCAGTCTGACAATTCATCAGAGAATTCATACAGGAGAGAAACCTT  150

seq1  ACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCCATCTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATGTAGTGAATGTGACAAATGCTTTTCCCGAAAATTCCATCTTGGT  200

seq1  ATTCATCAGAGAATTCATACAGGAAAGAAACCTTACAAATGTAGTGAATG  250
      ||||||||||||||||||||| || |||||||| ||||||||||||||||
seq2  ATTCATCAGAGAATTCATACAAGAGAGAAACCTCACAAATGTAGTGAATG  250

seq1  TGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAAATGCTTTACCCAGAAATCCCATCTTAGTATTCATCAGAAAATTC  300

seq1  ATACAGGAGAGAAACCTTACAAATAGAATGTATGTGACAAATACAATACT  350
      ||||| ||||||||||||||||||||| ||||||||||||||||||||||
seq2  ATACAAGAGAGAAACCTTACAAATAGATTGTATGTGACAAATACAATACT  350

seq1  CACAATGTCAGTCTTAGAAATCATCAGTTATTTCATACAGTAGAGAATCT  400
      |||||||||||||| ||||||||||||||||||||| |||||||||||||
seq2  CACAATGTCAGTCTGAGAAATCATCAGTTATTTCATGCAGTAGAGAATCT  400

seq1  TTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATAAATGAAGTGAACGAGACAATCCTTTACCAAGATATATCATCTCAA  450

seq1  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCATTAGAGAATACTTAGAGAAGACAAACTTTTCAAATATATTGTAG  500

seq1  GTATGAATCCTTTCCTTTTGGCCTATTTCCTAGACTGTAACAGTGA--AT  548
      |||||||||| |||||||||||||| |||||||| | |||||||||  ||
seq2  GTATGAATCC-TTCCTTTTGGCCTAATTCCTAGAATATAACAGTGAATAT  549

seq1  ACTTACAGGCTATAAACTTAACTCATGCATTGTATGAAGAAATATCTTTG  598
      |||||||||||| ||||||| ||||||||||||||| ||||||| |||||
seq2  ACTTACAGGCTAGAAACTTAGCTCATGCATTGTATG-AGAAATAGCTTTG  598

seq1  ACTTCATTTCAGGTCAGAGAGA-ACATCTAAGAACTTTTTAGGGTAAAGT  647
      ||||||||||| |||||| ||| |||||| ||||||||||||||||||||
seq2  ACTTCATTTCA-GTCAGA-AGAGACATCT-AGAACTTTTTAGGGTAAAGT  645

seq1  ATTTCTGTTGGGGAAAATGTTGTATTCTTGAC-AACACTTG-AGGCTCCA  695
      |||||||||  |||||||| || ||||||||| |||||||| ||||||||
seq2  ATTTCTGTTACGGAAAATG-TGAATTCTTGACAAACACTTGAAGGCTCCA  694

seq1  CACTAGAGAATTAGTATGATTATGAAAATCTTG  728
      |||   |||||||| ||||||||||||||||||
seq2  CACCTAAGAATTAGCATGATTATGAAAATCTTG  727

seq1: chr4_145761381_145762373
seq2: B6Ng01-211M01.g_76_1066

seq1  GAATTCATTCTGAACATGTAGATACTATTACTGAAGAAAGTTGTCATGAC  50
      ||||||||||||| | |||| ||||||||||||||||||||||    |||
seq2  GAATTCATTCTGACCTTGTAAATACTATTACTGAAGAAAGTTGGTTCGAC  50

seq1  CATGATATCAGCAAATATTCAGTGCTTTTTATGTATTTCATTGACCTTAT  100
        || || ||    |   |||| ||||  |  ||  ||||||||||||  
seq2  GTTGCTAACACTGGAGGCTCAGGGCTTGGTCAGTTGTTCATTGACCTTTG  100

seq1  ATTTCTCTCATGTCAAATATTTCTCTTGGCATTTGACAGGTATATGAATG  150
       |||||||| ||| ||||||||||||||||||||||| ||||||||||||
seq2  TTTTCTCTCTTGTGAAATATTTCTCTTGGCATTTGACGGGTATATGAATG  150

seq1  ATCTCTTTCAATGCCCCAGCCTGAGAAATATAGATTGACAATGGGAAAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTCTTTCAATGCCCCAGCCTGAGAAATATAGATTGACAATGGGAAAAA  200

seq1  AAAGCAGATGATCGAGTACCATAGAAAGTGATAGAAAATGAATGAGAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGATGATCGAGTACCATAGAAAGTGATAGAAAATGAATGAGAATT  250

seq1  GACAAGGGAAATATTGATTTCCTAGGAACAATAAACACTAGGCCAGGGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGGGAAATATTGATTTCCTAGGAACAATAAACACTAGGCCAGGGAA  300

seq1  TAATCAAGAGCAGAAACCCAGGCTCTCAGTGTTCCTTCTAGCACTTTCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAAGAGCAGAAACCCAGGCTCTCAGTGTTCCTTCTAGCACTTTCTC  350

seq1  AGGAATAATCAAATGCTGCACCAAATTCACAAATTTCTTCTGAAAAATCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATAATCAAATGCTGCACCAAATTCACAAATTTCTTCTGAAAAATCC  400

seq1  CACAAAAAAAATGTACAGATAAAACAGTGCAGAACACAGAAAGAAGGGGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAAAAAAAATGTACAGATAAAACAGTGCAGAACACAGAAAGAAGGGGA  450

seq1  ATATGGTACAGTTATCACACAAAGCTGACCTTACCTGGGTCCAAAAGCAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGGTACAGTTATCACACAAAGCTGACCTTACCTGGGTCCAAAAGCAA  500

seq1  ATAACCACGAAAACATGCACACAAAAAATAATAATAGTATGTGGTGCACC  550
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  ATAACCACGAAAACATGCACACAAAAAATAATAATAGTATG-GGTGCACC  549

seq1  AGTGCAACATTTAAAAAGTTTCTCTCTAATAGATGCAGAAAGTAAACTCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCAACATTTAAAAAGTTTCTCTCTAATAGATGCAGAAAGTAAACTCA  599

seq1  ACTTGATTTCATGCCAGAGACTCAAAACTGTTTCAACAAGCACAAACCAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGATTTCATGCCAGAGACTCAAAACTGTTTCAACAAGCACAAACCAA  649

seq1  ACAACTCAAGGCATAAACTATAATCAGTGGGAGAAAGCTCACAACCATGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTCAAGGCATAAACTATAATCAGTGGGAGAAAGCTCACAACCATGT  699

seq1  CAATATATCTATGAAAGGCCTAGAGCAAAATATCACAGTGCATCACTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATATCTATGAAAGGCCTAGAGCAAAATATCACAGTGCATCACTATG  749

seq1  AAAGCTGTGAAGAATGTGGAACAGAAAGAACATTACTGAGTCTAATGAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCTGTGAAGAATGTGGAACAGAAAGAACATTACTGAGTCTAATGAGG  799

seq1  ATAATAGCCAACATCCTAAGCCTATCACTGCACAAACTGAAGACAGCTGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATAGCCAACATCCTAAGCCTATCACTGCACAAACTGAAGACAGCTGT  849

seq1  CATCATTCTACTCTACTCAGAAGACAAACAAGGATGTGCAAAGCCTCCAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCATTCTACTCTACTCAGAAGACAAACAAGGATGTGCAAAGCCTCCAT  899

seq1  GCTAATTGATCACGATATGGCAGTGCTTACAAAGAGCAAGTAAGACTT-A  949
      ||||||||||||||||||||||||||||||||||||| |||||||||| |
seq2  GCTAATTGATCACGATATGGCAGTGCTTACAAAGAGCTAGTAAGACTTCA  949

seq1  GAATATT-TTCAATGATCAAAGAAGGATAAGAGGAAGGGAAGTTT  993
      ||||||| |||||||||| ||||| ||| ||||||| || |||||
seq2  GAATATTCTTCAATGATC-AAGAA-GATCAGAGGAA-GGTAGTTT  991