BAC Information

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BAC

Clone NameB6Ng01-211N05
Chromosome4 (Build37)
Map Location 17,077,025 - 17,078,220
singlet/doubletsinglet
Overlap genenone
Upstream geneRipk2, LOC667150, LOC383994, LOC100040154, LOC667212
Downstream geneLOC100040173, Mmp16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211N05.bB6Ng01-211N05.g
ACCGA029780GA029781
length1,1751,181
definitionB6Ng01-211N05.b B6Ng01-211N05.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcatgtttcttattcaatgtacacaaagaagcacatattctattgt
aatattcctgatagtttatattgctgtgatactttttgttcatgtgttta
ttaaagccaacttcttgtccctgaatgcaccattataggtttccttcaca
tatctttatatcaaacttatttattaatacaatccccagtttaacatttt
gcattaagttattatttaaacatataaaatatattactattgtatattat
atattgtgttatatattatgaaaataatatatgtctattttgattcttaa
tacattttaaatgattgacaaatacatatgtgtgtatgtgtaaataaata
attatttaaatattatttaaaaattaaatatagttaaaaacttttccctt
tcttttctttcaacaaacccctttcatgtgcctaccctactccttctcaa
attcatgcactcttttttttgcatatgtatataagtgcataaatatataa
atacaacctggtttgtctatttaatgttatttatatgtatatcagctcag
gttgaccatgtgagcttgggtaaccaattagtgggctcttctcagggaga
agactctttctcctctccacatactttggttgcatttactctttgtctaa
tagtgagcaaagtgaaattttttcccttttctgttatcatatccattgat
gatattgttttgggggttctcccttaggcagctctattatgaagatatca
tttgtatagctaccatattatgtctaggaaactatctcccaacagatatc
ctactttggcctttacaactgttctaatccttattccttgttattttctg
agctttatatttaaatttaggagttgagttgtagatatatccattgctac
tggacattcaatttagctactttgaaatatcagaagtgctgataaccact
gagcaatctccccagccctgagtttaatgattttcagtcagtttgtgtca
acatgttctttaaatatcaagctaatctttctttatattcagctctcccc
acttaggctgagtttgttaaacctgccacagaagctcatgccagattctc
aagagaaattctggagattcttatggcttgaagaatctactctctatgct
taattcaaagtcttcaattaatgaa

gaattcaaggcccatacctaaacatgataaaagcaatctacagcaaacca
gtggctaacatcaaagtaaatggtgagaagctggaagcaatcccactaaa
atcagggactagacaaggctgtccactctctccctacctattcaacattg
tacttgaagtcctaggcagagcagttagacaaaaaaagaagattaagggg
atacaaattggaaaggaagaagtcaaaatatcactttttgcatatgatat
gatagtatatataagtgaccctaaaaattcctaaaaactcctaagcttca
atcaagtagctggatataaaattaactcaaacaagtcaatggcctttctt
tacgaaaaggataaacaggctgagaaagaaattagcgaaacaacaccctt
ctcaatagtcacaaataatataaaataccttggcgtgactctaactaagg
aagtgaaagatctgtatgataaaaacttcaagtctctgaagaaagaaatt
aaagaagatctcagaagatggaaagatctcccatgctcatggattggcag
gatcaatatagtaaaaatggctatattgccaaaagcaatctacagattca
atgcaatccccatcaaaattccaactcaattcttcaacgaattagaaagg
gcaattggcagattcatctggaataacaaaaaaaacctaggatagcaaaa
actcttctcaaggataaaagaacctctggtggaatcaccatgcctgacct
aaagctttactacagagcaattgtgataaaaacttcatggtacttgtata
gtgacagacaagtagaccaatggaacagaattgaatacccagagatgaac
ccacacacctatggacacttgatctttgacaagggagctaaaccatccag
tggaaaaaggacaacattttcaacaaatggtgctggcacaactggcggtt
atcctgtagaaaatgcgaattgatccaatttctatctccttgtactaagg
tcaattctagtggataggactccacattaaaatcagagaacactgaaacg
tattagaggagaaaataggtaagaactcgaggattgagttacagtggcaa
aatcttgaataggacaggcaatgctggctgtagatgtaatcgatatggaa
ctcataaacttggcaagcctttctgcaatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_17077025_17078220
seq2: B6Ng01-211N05.b_48_1222

seq1  GAATTCATGTTTCTTATTCAATGTACACAAAGAAGCACATATTCTATTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGTTTCTTATTCAATGTACACAAAGAAGCACATATTCTATTGT  50

seq1  AATATTCCTGATAGTTTATATTGCTGTGATACTTTTTGTTCATGTGTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTCCTGATAGTTTATATTGCTGTGATACTTTTTGTTCATGTGTTTA  100

seq1  TTAAAGCCAACTTCTTGTCCCTGAATGCACCATTATAGGTTTCCTTCACA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAGCCAACTTCTTGTCCCTGAATGCACCATTATAGGTTTCCTTCACA  150

seq1  TATCTTTATATCAAACTTATTTATTAATACAATCCCCAGTTTAACATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTATATCAAACTTATTTATTAATACAATCCCCAGTTTAACATTTT  200

seq1  GCATTAAGTTATTATTTAAACATATAAAATATATTACTATTGTATATTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATTAAGTTATTATTTAAACATATAAAATATATTACTATTGTATATTAT  250

seq1  ATATTGTGTTATATATTATGAAAATAATATATGTCTATTTTGATTCTTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGTGTTATATATTATGAAAATAATATATGTCTATTTTGATTCTTAA  300

seq1  TACATTTTAAATGATTGACAAATACATATGTGTGTATGTGTAAATAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACATTTTAAATGATTGACAAATACATATGTGTGTATGTGTAAATAAATA  350

seq1  ATTATTTAAATATTATTTAAAAATTAAATATAGTTAAAAACTTTTCCCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTAAATATTATTTAAAAATTAAATATAGTTAAAAACTTTTCCCTT  400

seq1  TCTTTTCTTTCAACAAACCCCTTTCATGTGCCTACCCTACTCCTTCTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTTCTTTCAACAAACCCCTTTCATGTGCCTACCCTACTCCTTCTCAA  450

seq1  ATTCATGCACTCTTTTTTTTGCATATGTATATAAGTGCATAAATATATAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATGCACTCTTTTTTTTGCATATGTATATAAGTGCATAAATATATAA  500

seq1  ATACAACCTGGTTTGTCTATTTAATGTTATTTATATGTATATCAGCTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAACCTGGTTTGTCTATTTAATGTTATTTATATGTATATCAGCTCAG  550

seq1  GTTGACCATGTGAGCTTGGGTAACCAATTAGTGGGCTCTTCTCAGGGAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACCATGTGAGCTTGGGTAACCAATTAGTGGGCTCTTCTCAGGGAGA  600

seq1  AGACTCTTTCTCCTCTCCACATACTTTGGTTGCATTTACTCTTTGTCTAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTCTTTCTCCTCTCCACATACTTTGGTTGCATTTACTCTTTGTCTAA  650

seq1  TAGTGAGCAAAGTGAAATTTTTTCCCTTTTCTGTTATCATATCCATTGAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGAGCAAAGTGAAATTTTTTCCCTTTTCTGTTATCATATCCATTGAT  700

seq1  GATATTGTTTTGGGGGTTCTCCCTTAGGCAGCTCTATTATGAAGATATCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATTGTTTTGGGGGTTCTCCCTTAGGCAGCTCTATTATGAAGATATCA  750

seq1  TTTGTATAGCTACCATATTATGTCTAGGAAACTATCTCCCAACAGATATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTATAGCTACCATATTATGTCTAGGAAACTATCTCCCAACAGATATC  800

seq1  CTACTTTGGCCTTTACAACTGTTCTAATCCTTATTCCTTGTTATTTTCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTTGGCCTTTACAACTGTTCTAATCCTTATTCCTTGTTATTTTCTG  850

seq1  AGCTTTATATTTAAATTTAGGAGTTGAGTTGTAGATATATCCATTGCTAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTATATTTAAATTTAGGAGTTGAGTTGTAGATATATCCATTGCTAC  900

seq1  TGGACATTCAATTTAGCTACTTTGAAATATCAGGAAGTGCTGATAACCAC  950
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  TGGACATTCAATTTAGCTACTTTGAAATATCA-GAAGTGCTGATAACCAC  949

seq1  TGAGCAATCTCCCCAGCCCTGAGTTTAATGATTTTCAGTCAGTTTGTTGT  1000
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TGAGCAATCTCCCCAGCCCTGAGTTTAATGATTTTCAGTCAGTTTG-TGT  998

seq1  CAACATGTTTCTTTAAAATATCAAAGCTTAATTCTTCCTTTTATATTCAG  1050
      ||||||| |||||| ||||||| |||||  | |||| | |||||||||||
seq2  CAACATG-TTCTTT-AAATATC-AAGCT--AATCTTTC-TTTATATTCAG  1042

seq1  CCTCCTCCCACTTAGGCTGAGTTTGTTTAAACCTG-CACAGTAGCTCATG  1099
       |||  ||||||||||||||||||| ||||||||| ||||| ||||||||
seq2  -CTCTCCCCACTTAGGCTGAGTTTG-TTAAACCTGCCACAGAAGCTCATG  1090

seq1  CCCAGATTCTCAGAGA-AAATTCTGGAGA-TCTTAT-GCTTGAAAGAATC  1146
       ||||||||||| ||| |||||||||||| |||||| ||||| |||||||
seq2  -CCAGATTCTCA-AGAGAAATTCTGGAGATTCTTATGGCTTG-AAGAATC  1137

seq1  CTTTACCTCCTAAATGCTTTTATAATTCAAAGTCTTCCAATGGTAATGAA  1196
         |||   ||  |||||    |||||||||||||| ||||  |||||||
seq2  ---TAC--TCTCTATGCT----TAATTCAAAGTCTT-CAAT--TAATGAA  1175


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