BAC Information

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BAC

Clone NameB6Ng01-211N09
Chromosome4 (Build37)
Map Location 67,419,665 - 67,557,951
singlet/doubletdoublet
Overlap genenone
Upstream geneTlr4, LOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-211N09.bB6Ng01-211N09.g
ACCGA029788GA029789
length1,139497
definitionB6Ng01-211N09.b B6Ng01-211N09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,419,665 - 67,420,805)(67,557,449 - 67,557,951)
sequence
gaattcctgtagagcatggaataatcagaatgcaaatggacagaactagc
aaacaggaacacctgaaataggctggcatgacaattagtgtagaacggag
aaagttcagagctttcagtagaataaaggcttgaggcaggaaacttcaga
acaccaaaaatgtttaataggtaaaattaggatgcccacatgaatgcttt
aattctgatttctccactaacttgctctgtcgtctcagacaaatgaaagg
ccctctctatcccctgatctaataaatgtgaccaatgatttcatcccaaa
atagaatccaattttcatgtttaatttaaatgttaaaatcaagtatgttt
attagtatctcataataattaaataaattacagctatgtcatcatttgtt
ttaagaaaactgggttctattttgggactggagagatggttcagtagtta
tgaaggcttcctagatcttccagaagatctgatttggggacatcataact
gattttaagtacagcttcagagtcttatatcctctttttccctgcttggg
agcctacacacatgtgatacgtatacacacacacacacacacacacacac
acacacacagagagagagagagagagagagagagagagagagagagagag
agaattaaaaaataattttttgctgaaaaatacttgatttaatcataatt
ctagtctgtatttttcctttgatatgtgtctgtttaaaattctttgcctg
ctctcattctttacctatgatttcttttaggttttcttttttatctttat
tgataaacttttggacaataatttgtgggtttaggtccaaaaagtgagaa
acagaattaaagtacaattttagtcttgctttctttactgtctttgttcc
ccagcaatagagggcatatttccacttctttataaaatttatttgtagca
gtaagtttctatttctctgatggtaactttaccaaaagagcatagaaact
gggtgatcacttttttttttttctaagcagtttaatctgctttgtatctt
tctacattaaaaatgtaatgattcagtaagctccagacgaattattattt
agtcttctgggtttttctttcaggaaaagcactgatttt

tcaattgaggaaagttctaaaagacaccttatgaagattgctttaacctt
gttcagtacttgaaaaccattagaatttgaaggccagattcttaccccat
agtgaagtggctgagacaaaaagaacaccaatattccatgaacagtctta
cttcataaggtgacaattataatgacctggaaaaagtctaaatattgtga
cacacacattacttttatcttttatcggttgttctttaggtactacaagt
ataagataggtattgttaagtttctctatctacaaatgataagacgatga
gagagtatccaaattgagaacataactgaaatccatcaagacttaaagat
ttctgagggtatgttgaaaatattaggcagataatgaaacttaaagttca
gttaaaaaattaaacaaaaagatctagaaaggatctaaatcacaccagag
attatgtcttaaggcaatgtgtgtgtgtgtgtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67419665_67420805
seq2: B6Ng01-211N09.b_44_1182

seq1  GAATTCCTGTAGAGCATGGAATAATCAGAATGCAAATGGACAGAACTAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTAGAGCATGGAATAATCAGAATGCAAATGGACAGAACTAGC  50

seq1  AAACAGGAACACCTGAAATAGGCTGGCATGACAATTAGTGTAGAACGGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAACACCTGAAATAGGCTGGCATGACAATTAGTGTAGAACGGAG  100

seq1  AAAGTTCAGAGCTTTCAGTAGAATAAAGGCTTGAGGCAGGAAACTTCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTCAGAGCTTTCAGTAGAATAAAGGCTTGAGGCAGGAAACTTCAGA  150

seq1  ACACCAAAAATGTTTAATAGGTAAAATTAGGATGCCCACATGAATGCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAAATGTTTAATAGGTAAAATTAGGATGCCCACATGAATGCTTT  200

seq1  AATTCTGATTTCTCCACTAACTTGCTCTGTCGTCTCAGACAAATGAAAGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTGATTTCTCCACTAACTTGCTCTGTCGTCTCAGACAAATGAAAGG  250

seq1  CCCTCTCTATCCCCTGATCTAATAAATGTGACCAATGATTTCATCCCAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTCTCTATCCCCTGATCTAATAAATGTGACCAATGATTTCATCCCAAA  300

seq1  ATAGAATCCAATTTTCATGTTTAATTTAAATGTTAAAATCAAGTATGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATCCAATTTTCATGTTTAATTTAAATGTTAAAATCAAGTATGTTT  350

seq1  ATTAGTATCTCATAATAATTAAATAAATTACAGCTATGTCATCATTTGTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGTATCTCATAATAATTAAATAAATTACAGCTATGTCATCATTTGTT  400

seq1  TTAAGAAAACTGGGTTCTATTTTGGGACTGGAGAGATGGTTCAGTAGTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGAAAACTGGGTTCTATTTTGGGACTGGAGAGATGGTTCAGTAGTTA  450

seq1  TGAAGGCTTCCTAGATCTTCCAGAAGATCTGATTTGGGGACATCATAACT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGCTTCCTAGATCTTCCAGAAGATCTGATTTGGGGACATCATAACT  500

seq1  GATTTTAAGTACAGCTTCAGAGTCTTATATCCTCTTTTTCCCTGCTTGGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTTAAGTACAGCTTCAGAGTCTTATATCCTCTTTTTCCCTGCTTGGG  550

seq1  AGCCTACACACATGTGATACGTATACACACACACACACACACACACACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTACACACATGTGATACGTATACACACACACACACACACACACACAC  600

seq1  ACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  650

seq1  AGAATTAAAAAATAATTTTTTGCTGAAAAATACTTGATTTAATCATAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTAAAAAATAATTTTTTGCTGAAAAATACTTGATTTAATCATAATT  700

seq1  CTAGTCTGTATTTTTCCTTTGATATGTGTCTGTTTAAAATTCTTTGCCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGTCTGTATTTTTCCTTTGATATGTGTCTGTTTAAAATTCTTTGCCTG  750

seq1  CTCTCATTCTTTACCTATGATTTCTTTTAGGTTTTCTTTTTTATCTTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCATTCTTTACCTATGATTTCTTTTAGGTTTTCTTTTTTATCTTTAT  800

seq1  TGATAAACTTTTGGACAATAATTTGTGGGTTTAGGTCCAAAAAGTGAGAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATAAACTTTTGGACAATAATTTGTGGGTTTAGGTCCAAAAAGTGAGAA  850

seq1  ACAGAATTAAAGTACAATTTTAGTCTTGCTTTCTTTACTGTCTTTGTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGAATTAAAGTACAATTTTAGTCTTGCTTTCTTTACTGTCTTTGTTCC  900

seq1  CCAGCAATAGAGGGCATATTTCCACTTCTTTATAAAATTTATTTGTAGCA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAATAGAGGGCATATTTCCACTTCTTTATAAAATTTATTTGTAGCA  950

seq1  GTAAGTTTCTATTTCTCTGAATGGTAACTTTACCAAAAAGAGCAGAGGAA  1000
      ||||||||||||||||||| |||||||||||||| ||||||||| | |||
seq2  GTAAGTTTCTATTTCTCTG-ATGGTAACTTTACC-AAAAGAGCATA-GAA  997

seq1  ACTGGGTGATCACTTTTTTTTTTTTCTAAAGCAAGTTTTAATCTTCTTT-  1049
      ||||||||||||||||||||||||||| |||||   |||||||| |||| 
seq2  ACTGGGTGATCACTTTTTTTTTTTTCT-AAGCA--GTTTAATCTGCTTTG  1044

seq1  TATCTTTCTTACATTAAAAATGTAATGATTCAGTAGGCTCCAGA-GAATT  1098
      |||||||| |||||||||||||||||||||||||| |||||||| |||||
seq2  TATCTTTC-TACATTAAAAATGTAATGATTCAGTAAGCTCCAGACGAATT  1093

seq1  AT--ATTAGTCTTCTAGGTTTTCTTTTTCAG--AATACACTGATTTT  1141
      ||   |||||||||| |||||| | ||||||  ||  ||||||||||
seq2  ATTATTTAGTCTTCTGGGTTTT-TCTTTCAGGAAAAGCACTGATTTT  1139


seq1: chr4_67557449_67557951
seq2: B6Ng01-211N09.g_66_568 (reverse)

seq1  CACACACACACACACACACACACACACACATTGCCTTAAGACATAATCTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACACATTGCCTTAAGACATAATCTC  50

seq1  TGGTGTGATTTAGATCCTTTCTAGATCTTTTTGTTTAATTTTTTAACTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGTGATTTAGATCCTTTCTAGATCTTTTTGTTTAATTTTTTAACTGA  100

seq1  ACTTTAAGTTTCATTATCTGCCTAATATTTTCAACATACCCTCAGAAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAGTTTCATTATCTGCCTAATATTTTCAACATACCCTCAGAAATC  150

seq1  TTTAAGTCTTGATGGATTTCAGTTATGTTCTCAATTTGGATACTCTCTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGTCTTGATGGATTTCAGTTATGTTCTCAATTTGGATACTCTCTCA  200

seq1  TCGTCTTATCATTTGTAGATAGAGAAACTTAACAATACCTATCTTATACT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCTTATCATTTGTAGATAGAGAAACTTAACAATACCTATCTTATACT  250

seq1  TGTAGTACCTAAAGAACAACCGATAAAAGATAAAAGTAATGTGTGTGTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTACCTAAAGAACAACCGATAAAAGATAAAAGTAATGTGTGTGTCA  300

seq1  CAATATTTAGACTTTTTCCAGGTCATTATAATTGTCACCTTATGAAGTAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATATTTAGACTTTTTCCAGGTCATTATAATTGTCACCTTATGAAGTAA  350

seq1  GACTGTTCATGGAATATTGGTGTTCTTTTTGTCTCAGCCACTTCACTATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGTTCATGGAATATTGGTGTTCTTTTTGTCTCAGCCACTTCACTATG  400

seq1  GGGTAAGAATCTGGCCTTCAAATTCTAATGGTTTTCAAGTACTGAACAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTAAGAATCTGGCCTTCAAATTCTAATGGTTTTCAAGTACTGAACAAG  450

seq1  GTTAAAGCAATCTTCATAAGGTGTCTTTTAGAACTTTCCTCAATTGAGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGCAATCTTCATAAGGTGTCTTTTAGAACTTTCCTCAATTGAGAA  500

seq1  TTC  503
      |||
seq2  TTC  503


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