BAC Information

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BAC

Clone NameB6Ng01-212C06
Chromosome4 (Build37)
Map Location 134,265,420 - 134,374,625
singlet/doubletdoublet
Overlap geneLdlrap1, Tmem57
Upstream geneArid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2, Stmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
Downstream geneRhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3, 1700029M20Rik, Il28ra, Il22ra1, LOC665334, Myom3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212C06.bB6Ng01-212C06.g
ACCGA030015GA030016
length9891,073
definitionB6Ng01-212C06.b B6Ng01-212C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,265,420 - 134,266,409)(134,373,557 - 134,374,625)
sequence
gaattcctgatccttcttctgccctagcctctccaatagctctgatcaca
ggcctgtgacactaggcctggctaaatgaacattttaaggactgatagag
tgaaggaggtagaggccttttggggtgtaccactgtagcccctgttcatg
acgtctgctgctggggtggttagaagacacttggaagacttgatctgggc
catggtagatgggagccatattggcaccagtgcccagggctctatatgtc
tgaggtgggagcgggagcgggaggggctgctactgattctcttgtactag
gaaggctctgggcggtagcaggatctgaatctcaagtggccattagcccc
atttagaatcacaggcagagagaaccagctgtctctgagatagccatcag
acagttccctaatggccaccagacatagccttcccaggcaggaaagactt
agccaactaggggtgagacaaaagagtgtcccctcctcccccagaccatg
gcacaccagtgattcctgagatcaaaggccctgcagtcagcatgggctca
tcctagcagtctgccaccagtcaatgccttgctgtgctgggggccagtct
tgaggtcacagagacggagctctctgaagttgcccttccttcctttcaac
tctccttgcctttgagcctgagccctgcagctgaatctgctatcagctgc
tggatcttcagcctgagcaaggcgtcccactgtaggggcttctgcagggg
cctggagagatcaccctcagggacccatgctaggcatgaaacagcagagc
caagcctttgtagccaggcacaggtttgagtcctagcttggtcacagttg
ggctggtgattctaggcaaattgttcacctctctgagctctgagtttccc
atccggtctgtctgatgggtgctgacccagactaagcatgctactattcg
agaagagagagagtgagagaggagagagagagagagaga
gaattcttattaagatcagtttgagctgggcgtggtggcgcatgccttta
atcccagcagaggcaggtggatttctgagttcgaggccagcctggtctac
aaagtgagttacaggacagccagagctacacagagaaaccctgtctggaa
aaaccaaaataaataaataaataaaagaaagaaagaaagaaaaagaaaga
tcagcttgttcctcacagatctttctcttgtcaaaactcactaccctgtg
ccttaagcatcccctctgctcacaggcaggctttatttaaaaaaaaaaaa
aaggtacttcacagcaccattaaacctttaaacttctgagaaatctttgc
cttggtctgattccaggcaatcaccagagaaatacaaacatttagattct
gggtctccctaacttcagatatttaaaatatctgtccaagtgcaggctgg
cacttgagaacttgggggtgtttttcttatctcgcctgcctaaggctgtc
atctgcattcagttccttcagtcagtttggagattccccttattaaaatg
taaatcttttcctcttgaatttaaacagctatcaactacatagagtttgg
cttggggttaggattagggaataactgagattaggggaagagataggact
agagtaggtaagagggcccttagctttcaaatccacttcctaggtgccct
gcagcctgacctgaggaccgttgagagagcttctgtaggcgggtcccgtc
tctgaagagctaggtgagtgctttcagagctttgggctggctatcaggtc
attgtgacctgtaactggttacaactagacagaagtacacagaatttatg
ccagtgctggtcccaccagccagcccacaggggctgggcaagcaggaagt
acatttgcttcctcgctaaaattgatgagggtggtagcaccttgtaggaa
gagtttcttaatccctcagaaagcctctggtagggcagagcagcttagct
ctgagaagatgggagtcattgatgggtaggaagtactgtcctctaccctt
ggatccggactggaattgaaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134265420_134266409
seq2: B6Ng01-212C06.b_47_1035

seq1  GAATTCCTGATCCTTCTTCTGCCCTAGCCTCTCCAATAGCTCTGATCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGATCCTTCTTCTGCCCTAGCCTCTCCAATAGCTCTGATCACA  50

seq1  GGCCTGTGACACTAGGCCTGGCTAAATGAACATTTTAAGGACTGATAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTGTGACACTAGGCCTGGCTAAATGAACATTTTAAGGACTGATAGAG  100

seq1  TGAAGGAGGTAGAGGCCTTTTGGGGTGTACCACTGTAGCCCCTGTTCATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGAGGTAGAGGCCTTTTGGGGTGTACCACTGTAGCCCCTGTTCATG  150

seq1  ACGTCTGCTGCTGGGGTGGTTAGAAGACACTTGGAAGACTTGATCTGGGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTCTGCTGCTGGGGTGGTTAGAAGACACTTGGAAGACTTGATCTGGGC  200

seq1  CATGGTAGATGGGAGCCATATTGGCACCAGTGCCCAGGGCTCTATATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGTAGATGGGAGCCATATTGGCACCAGTGCCCAGGGCTCTATATGTC  250

seq1  TGAGGTGGGAGCGGGAGCGGGAGGGGCTGCTACTGATTCTCTTGTACTAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTGGGAGCGGGAGCGGGAGGGGCTGCTACTGATTCTCTTGTACTAG  300

seq1  GAAGGCTCTGGGCGGTAGCAGGATCTGAATCTCAAGTGGCCATTAGCCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCTCTGGGCGGTAGCAGGATCTGAATCTCAAGTGGCCATTAGCCCC  350

seq1  ATTTAGAATCACAGGCAGAGAGAACCAGCTGTCTCTGAGATAGCCATCAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAGAATCACAGGCAGAGAGAACCAGCTGTCTCTGAGATAGCCATCAG  400

seq1  ACAGTTCCCTAATGGCCACCAGACATAGCCTTCCCAGGCAGGAAAGACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGTTCCCTAATGGCCACCAGACATAGCCTTCCCAGGCAGGAAAGACTT  450

seq1  AGCCAACTAGGGGTGAGACAAAAGAGTGTCCCCTCCTCCCCCAGACCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAACTAGGGGTGAGACAAAAGAGTGTCCCCTCCTCCCCCAGACCATG  500

seq1  GCACACCAGTGATTCCTGAGATCAAAGGCCCTGCAGTCAGCATGGGCTCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACACCAGTGATTCCTGAGATCAAAGGCCCTGCAGTCAGCATGGGCTCA  550

seq1  TCCTAGCAGTCTGCCACCAGTCAATGCCTTGCTGTGCTGGGGGCCAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTAGCAGTCTGCCACCAGTCAATGCCTTGCTGTGCTGGGGGCCAGTCT  600

seq1  TGAGGTCACAGAGACGGAGCTCTCTGAAGTTGCCCTTCCTTCCTTTCAAC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTCACAGAGACGGAGCTCTCTGAAGTTGCCCTTCCTTCCTTTCAAC  650

seq1  TCTCCTTGCCTTTGAGCCTGAGCCCTGCAGCTGAATCTGCTATCAGCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCTTGCCTTTGAGCCTGAGCCCTGCAGCTGAATCTGCTATCAGCTGC  700

seq1  TGGATCTTCAGCCTGAGCAAGGCGTCCCACTGTAGGGGCTTCTGCAGGGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTCAGCCTGAGCAAGGCGTCCCACTGTAGGGGCTTCTGCAGGGG  750

seq1  CCTGGAGAGATCACCCTCAGGGACCCATGCTAGGCATGAAACAGCAGAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGAGATCACCCTCAGGGACCCATGCTAGGCATGAAACAGCAGAGC  800

seq1  CAAGCCTTTGTAGCCAGGCACAGGTTTGAGTCCTAGCTTGGTCACAGTTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCCTTTGTAGCCAGGCACAGGTTTGAGTCCTAGCTTGGTCACAGTTG  850

seq1  GGCTGGTGATTCTAGGCAAATTGTTCACCTCTCTGAGCTCTGAGTTTCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGTGATTCTAGGCAAATTGTTCACCTCTCTGAGCTCTGAGTTTCCC  900

seq1  ATCC-GTCTGTCTGAT-GGTGCTGACCCAGACTAAGCATGCTACTATACG  948
      |||| ||||||||||| |||||||||||||||||||||||||||||| ||
seq2  ATCCGGTCTGTCTGATGGGTGCTGACCCAGACTAAGCATGCTACTATTCG  950

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAGAGA  990
      ||| |||||||||| ||||||| ||||||||||||| |||||
seq2  AGA-AGAGAGAGAGTGAGAGAG-GAGAGAGAGAGAG-AGAGA  989

seq1: chr4_134373557_134374625
seq2: B6Ng01-212C06.g_66_1138 (reverse)

seq1  ACCTTCAAAATTCCAGT-CGGATCAAAGGGTAGAGGACAGTACTTCCCTA  49
      ||||||  ||||||||| |||||| ||||||||||||||||||||||   
seq2  ACCTTC--AATTCCAGTCCGGATCCAAGGGTAGAGGACAGTACTTCCTAC  48

seq1  CCATCATGGACTCCCATC-TCTCAGAGCTAAGCCTGCTCTGCCCTACCAG  98
      ||||||  |||||||||| ||||||||||||| |||||||||||||||||
seq2  CCATCAATGACTCCCATCTTCTCAGAGCTAAG-CTGCTCTGCCCTACCAG  97

seq1  -GGC-TTCTGAGGGATTAAGGAACTCTTCCTACAA-GTGCTA-CAACCTC  144
       ||| ||||||||||||||| |||||||||||||| |||||| || ||||
seq2  AGGCTTTCTGAGGGATTAAGAAACTCTTCCTACAAGGTGCTACCACCCTC  147

seq1  ATCAATTTTAGCGAGGAAGCAAATGTACTTCCTGCTTGCCCAGCCCCTGT  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTTTAGCGAGGAAGCAAATGTACTTCCTGCTTGCCCAGCCCCTGT  197

seq1  GGGCTGGCTGGTGGGACCAGCACTGGCATAAATTCTGTGTACTTCTGTCT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGGCTGGTGGGACCAGCACTGGCATAAATTCTGTGTACTTCTGTCT  247

seq1  AGTTGTAACCAGTTACAGGTCACAATGACCTGATAGCCAGCCCAAAGCTC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTAACCAGTTACAGGTCACAATGACCTGATAGCCAGCCCAAAGCTC  297

seq1  TG-AAGCACTCACCTAGCTCTTCAGAGACGGGACCCGCCTACAGAAGCTC  343
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCACTCACCTAGCTCTTCAGAGACGGGACCCGCCTACAGAAGCTC  347

seq1  TCTCAACGGTCCTCAGGTCAGGCTGCAGGGCACCTAGGAAGTGGATTTGA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAACGGTCCTCAGGTCAGGCTGCAGGGCACCTAGGAAGTGGATTTGA  397

seq1  AAGCTAAGGGCCCTCTTACCTACTCTAGTCCTATCTCTTCCCCTAATCTC  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTAAGGGCCCTCTTACCTACTCTAGTCCTATCTCTTCCCCTAATCTC  447

seq1  AGTTATTCCCTAATCCTAACCCCAAGCCAAACTCTATGTAGTTGATAGCT  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTATTCCCTAATCCTAACCCCAAGCCAAACTCTATGTAGTTGATAGCT  497

seq1  GTTTAAATTCAAGAGGAAAAGATTTACATTTTAATAAGGGGAATCTCCAA  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAAATTCAAGAGGAAAAGATTTACATTTTAATAAGGGGAATCTCCAA  547

seq1  ACTGACTGAAGGAACTGAATGCAGATGACAGCCTTAGGCAGGCGAGATAA  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTGAAGGAACTGAATGCAGATGACAGCCTTAGGCAGGCGAGATAA  597

seq1  GAAAAACACCCCCAAGTTCTCAAGTGCCAGCCTGCACTTGGACAGATATT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAACACCCCCAAGTTCTCAAGTGCCAGCCTGCACTTGGACAGATATT  647

seq1  TTAAATATCTGAAGTTAGGGAGACCCAGAATCTAAATGTTTGTATTTCTC  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATATCTGAAGTTAGGGAGACCCAGAATCTAAATGTTTGTATTTCTC  697

seq1  TGGTGATTGCCTGGAATCAGACCAAGGCAAAGATTTCTCAGAAGTTTAAA  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATTGCCTGGAATCAGACCAAGGCAAAGATTTCTCAGAAGTTTAAA  747

seq1  GGTTTAATGGTGCTGTGAAGTACCTTTTTTTTTTTTTTAAATAAAGCCTG  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTAATGGTGCTGTGAAGTACCTTTTTTTTTTTTTTAAATAAAGCCTG  797

seq1  CCTGTGAGCAGAGGGGATGCTTAAGGCACAGGGTAGTGAGTTTTGACAAG  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGCAGAGGGGATGCTTAAGGCACAGGGTAGTGAGTTTTGACAAG  847

seq1  AGAAAGATCTGTGAGGAACAAGCTGATCTTTCTTTTTCTTTCTTTCTTTC  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAGATCTGTGAGGAACAAGCTGATCTTTCTTTTTCTTTCTTTCTTTC  897

seq1  TTTTATTTATTTATTTATTTTGGTTTTTCCAGACAGGGTTTCTCTGTGTA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATTTATTTATTTATTTTGGTTTTTCCAGACAGGGTTTCTCTGTGTA  947

seq1  GCTCTGGCTGTCCTGTAACTCACTTTGTAGACCAGGCTGGCCTCGAACTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGGCTGTCCTGTAACTCACTTTGTAGACCAGGCTGGCCTCGAACTC  997

seq1  AGAAATCCACCTGCCTCTGCTGGGATTAAAGGCATGCGCCACCACGCCCA  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATCCACCTGCCTCTGCTGGGATTAAAGGCATGCGCCACCACGCCCA  1047

seq1  GCTCAAACTGATCTTAATAAGAATTC  1069
      ||||||||||||||||||||||||||
seq2  GCTCAAACTGATCTTAATAAGAATTC  1073