BAC Information

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BAC

Clone NameB6Ng01-212F15
Chromosome4 (Build37)
Map Location 87,814,359 - 87,959,111
singlet/doubletdoublet
Overlap geneBC057079
Upstream geneSlc24a2, Mllt3
Downstream genePtplad2, Ifnb1, OTTMUSG00000007655, Ifna14, Ifna9, Mrpl48-ps, Ifna12, C87499, Ifna13, LOC546834, OTTMUSG00000011275, Ifna2, Ifnab, LOC546835, Klhl9, LOC100040477, Ifnz, LOC100041062, EG545645, LOC668147, OTTMUSG00000011291, OTTMUSG00000011290, OTTMUSG00000011265, Ifnz, OTTMUSG00000011269, OTTMUSG00000011270, OTTMUSG00000011272, OTTMUSG00000011268, OTTMUSG00000011273, OTTMUSG00000011282, OTTMUSG00000011285, OTTMUSG00000011289, Ifna7, Ifna11, Ifna6, Ifna5, Ifna4, Ifna1, Ifne1, LOC100040617, Mtap, LOC625574, Cdkn2a, Cdkn2b
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-212F15.bB6Ng01-212F15.g
ACCGA030170GA030171
length1,1631,130
definitionB6Ng01-212F15.b B6Ng01-212F15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(87,957,946 - 87,959,111)(87,814,359 - 87,815,488)
sequence
gaattctcaaaatccatctctaacatacattttatatccagaacgtgtaa
aacccttccattagaaaatgaaatctcaggggaaaaaattgtgaaactat
cacatgcatcatggaaaactaaggatgacaaatggaaaagtgaaaagatg
ccagacaccattcatcagtgcagaaatgaacaacatacccattactgtta
ctggcagggaggcaggcagagaactcttatatcacaggggcagctacaag
cagacagccaatgggatacagcctacaatctatgtttaattaccaaatac
cccaacaacctcactcttggctctttctctacttaagggaaatggcatca
gaaaaaaaaaactgatgtcaacacaaaaatatctttgtaattcagtgagg
aatcatcataaaaatgtttatacgaccaccagaaaccagacgcaaactaa
aggtccaccacccactaaattgataaacaaatgaaattctcaggaaaaac
ttccagagatacaaagaagagttcgaagaaacttctagaaaaatgcaaaa
caggctccaggaagaatcaaaccaaaccaaaccaaacagcggcaaggaca
acaaaggcagaagcaaggggagatctaaggtagacataactgatggacct
ggaaggggacgtgctcatcctgaactgcagtttcactctgggatttctgt
tactcacagtcaaccacggtctgataagtaactgaaaatcccataaagaa
atggtttgcaggcttgaatccacgcaccgtcctaagcagtctgacagaac
tttgcactgtcctgctctggacgtgaggccttccttcagccagtgtatct
gtactgcatgtactacctgccctttaatcctagctcattcagaaacctca
ttaaccataatggctctagaccttaagaatggtggcactggtcaatcaga
atgtcaaagcaagccaagaagagaataagtaaaagttgtggacttaataa
agaaatttttaaaattccacttgatatggctgctaagcttctatggttaa
gaaactgaattgaaattcagggtcaattccagacttttccactaagcttg
tttttatgattcttgacaaattaacagacttactcagacgtgcatggtgg
agattaatgaatg
gaattcacactgctatgtggagatgggaattggagacagacttgcctgga
aggtacttcactgcagagccggcaggatactctgcagccagcaggacact
ctgcagtccgagcaagagagtaaggcaagagccgactctcaaaagttctc
tcgtggcttccacacatgctgtgtggtacaataaacagacagataagcaa
acaaacaaacatttaaaaggaatcaggagggttgttcctaggaagttgct
tgcatcctgcaggtgtgactcagtggtaaagagctcgtttgcccagcatg
ggagacccttggcctgatccctggcattgcacagataagtcctaagaaat
attcatctgtatccacttgctaccaagcctgatgacttgaattcaatccc
ttgaacccacgtggtggaaggggacctaactcccaagagctgtcctgtga
ttttcacattcagtccatggtgcctttctcccccaaatgcataaataaat
ataaaataaaaacaaaaaacaaaaagcaaaaccccttggtacatttacaa
ctataattaggattttgaactcttgaaaagaatctgttatgcttttttat
tcttcctaaagctccattctctgagaatcctccagatttcagattctctg
tttaataaagcctttttagatatcttaatggaaataggccaagtactaca
aatccctgtacaacagtggtttgaaagcattttcagcttggaagctttct
tatttgagatgggaggaatattgtctttttcctttatactaaatatgctg
gaagacacagaactgtgcatgtactgagactctagaaaaaaatgaggatg
aaccagggagatgcctcagtgctaggagcactggtcgctcttacagagga
ttggtgactcagttcctagcactcacattgaggctaaccatctataattc
cagagccaggggattcagtgccattttctggcttctagacactggatgct
cgtgatgcacagacatacatgaaataaaattaaacaaggtaaagtaccag
agcagagaatacagttgcttatgagctagcctaatggtgagaagggacag
aacagttacttgcatggtaaaggtccagta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_87957946_87959111
seq2: B6Ng01-212F15.b_47_1209 (reverse)

seq1  CATTCATTTAATCTCCA-CATGCACGGTCTGAGGTAGGTCCTGTTAATTT  49
      |||||| |||||||||| ||||||| |||||| ||| || ||||||||||
seq2  CATTCA-TTAATCTCCACCATGCAC-GTCTGA-GTAAGT-CTGTTAATTT  46

seq1  GTTCAAG-ATCATAAAA--CAGCTAAGTGGAAGAGTCTGGAAATTGAACC  96
      | ||||| |||||||||   |||| ||||||| ||||||| ||||| |||
seq2  G-TCAAGAATCATAAAAACAAGCTTAGTGGAAAAGTCTGG-AATTG-ACC  93

seq1  CTGGAATTCAATTTCAGTTTCTT-ACCATAG-AGCTTAGCAGCCATATCA  144
      ||| | ||||| ||||||||||| ||||||| ||||||||||||||||||
seq2  CTGAATTTCAA-TTCAGTTTCTTAACCATAGAAGCTTAGCAGCCATATCA  142

seq1  AGTGAATTTTTAAAAATTTCTTTATTAAGTCCACAACTTTTACTTATTCT  194
      |||| | |||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAATTTTAAAAATTTCTTTATTAAGTCCACAACTTTTACTTATTCT  192

seq1  CTTCTTGGCTTGCTTTGGCATTTCTGATTGACCAGTGCCACCATTCTTAA  244
      ||||||||||||||||| || |||||||||||||||||||||||||||||
seq2  CTTCTTGGCTTGCTTTGACA-TTCTGATTGACCAGTGCCACCATTCTTAA  241

seq1  GGTCTAGAGCCATTATGGTTAATGAGGTTTCTGAATGAGCTAGGATTAAA  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTAGAGCCATTATGGTTAATGAGGTTTCTGAATGAGCTAGGATTAAA  291

seq1  GGGCAGGTAGTACATGCAGTACAGATACACTGGCTGAAGGAAGGCCTCAC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCAGGTAGTACATGCAGTACAGATACACTGGCTGAAGGAAGGCCTCAC  341

seq1  GTCCAGAGCAGGACAGTGCAAAGTTCTGTCAGACTGCTTAGGACGGTGCG  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCAGAGCAGGACAGTGCAAAGTTCTGTCAGACTGCTTAGGACGGTGCG  391

seq1  TGGATTCAAGCCTGCAAACCATTTCTTTATGGGATTTTCAGTTACTTATC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATTCAAGCCTGCAAACCATTTCTTTATGGGATTTTCAGTTACTTATC  441

seq1  AGACCGTGGTTGACTGTGAGTAACAGAAATCCCAGAGTGAAACTGCAGTT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACCGTGGTTGACTGTGAGTAACAGAAATCCCAGAGTGAAACTGCAGTT  491

seq1  CAGGATGAGCACGTCCCCTTCCAGGTCCATCAGTTATGTCTACCTTAGAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGATGAGCACGTCCCCTTCCAGGTCCATCAGTTATGTCTACCTTAGAT  541

seq1  CTCCCCTTGCTTCTGCCTTTGTTGTCCTTGCCGCTGTTTGGTTTGGTTTG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCCTTGCTTCTGCCTTTGTTGTCCTTGCCGCTGTTTGGTTTGGTTTG  591

seq1  GTTTGATTCTTCCTGGAGCCTGTTTTGCATTTTTCTAGAAGTTTCTTCGA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGATTCTTCCTGGAGCCTGTTTTGCATTTTTCTAGAAGTTTCTTCGA  641

seq1  ACTCTTCTTTGTATCTCTGGAAGTTTTTCCTGAGAATTTCATTTGTTTAT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTTCTTTGTATCTCTGGAAGTTTTTCCTGAGAATTTCATTTGTTTAT  691

seq1  CAATTTAGTGGGTGGTGGACCTTTAGTTTGCGTCTGGTTTCTGGTGGTCG  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATTTAGTGGGTGGTGGACCTTTAGTTTGCGTCTGGTTTCTGGTGGTCG  741

seq1  TATAAACATTTTTATGATGATTCCTCACTGAATTACAAAGATATTTTTGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAACATTTTTATGATGATTCCTCACTGAATTACAAAGATATTTTTGT  791

seq1  GTTGACATCAGTTTTTTTTTTCTGATGCCATTTCCCTTAAGTAGAGAAAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGACATCAGTTTTTTTTTTCTGATGCCATTTCCCTTAAGTAGAGAAAG  841

seq1  AGCCAAGAGTGAGGTTGTTGGGGTATTTGGTAATTAAACATAGATTGTAG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAAGAGTGAGGTTGTTGGGGTATTTGGTAATTAAACATAGATTGTAG  891

seq1  GCTGTATCCCATTGGCTGTCTGCTTGTAGCTGCCCCTGTGATATAAGAGT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTATCCCATTGGCTGTCTGCTTGTAGCTGCCCCTGTGATATAAGAGT  941

seq1  TCTCTGCCTGCCTCCCTGCCAGTAACAGTAATGGGTATGTTGTTCATTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCCTGCCTCCCTGCCAGTAACAGTAATGGGTATGTTGTTCATTTC  991

seq1  TGCACTGATGAATGGTGTCTGGCATCTTTTCACTTTTCCATTTGTCATCC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCACTGATGAATGGTGTCTGGCATCTTTTCACTTTTCCATTTGTCATCC  1041

seq1  TTAGTTTTCCATGATGCATGTGATAGTTTCACAATTTTTTCCCCTGAGAT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTTTTCCATGATGCATGTGATAGTTTCACAATTTTTTCCCCTGAGAT  1091

seq1  TTCATTTTCTAATGGAAGGGTTTTACACGTTCTGGATATAAAATGTATGT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATTTTCTAATGGAAGGGTTTTACACGTTCTGGATATAAAATGTATGT  1141

seq1  TAGAGATGGATTTTGAGAATTC  1166
      ||||||||||||||||||||||
seq2  TAGAGATGGATTTTGAGAATTC  1163

seq1: chr4_87814359_87815488
seq2: B6Ng01-212F15.g_68_1197

seq1  GAATTCACACTGCTATGTGGAGATGGGAATTGGAGACAGACTTGCCTGGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACACTGCTATGTGGAGATGGGAATTGGAGACAGACTTGCCTGGA  50

seq1  AGGTACTTCACTGCAGAGCCGGCAGGATACTCTGCAGCCAGCAGGACACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACTTCACTGCAGAGCCGGCAGGATACTCTGCAGCCAGCAGGACACT  100

seq1  CTGCAGTCCGAGCAAGAGAGTAAGGCAAGAGCCGACTCTCAAAAGTTCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGTCCGAGCAAGAGAGTAAGGCAAGAGCCGACTCTCAAAAGTTCTC  150

seq1  TCGTGGCTTCCACACATGCTGTGTGGTACAATAAACAGACAGATAAGCAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTGGCTTCCACACATGCTGTGTGGTACAATAAACAGACAGATAAGCAA  200

seq1  ACAAACAAACATTTAAAAGGAATCAGGAGGGTTGTTCCTAGGAAGTTGCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACAAACATTTAAAAGGAATCAGGAGGGTTGTTCCTAGGAAGTTGCT  250

seq1  TGCATCCTGCAGGTGTGACTCAGTGGTAAAGAGCTCGTTTGCCCAGCATG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATCCTGCAGGTGTGACTCAGTGGTAAAGAGCTCGTTTGCCCAGCATG  300

seq1  GGAGACCCTTGGCCTGATCCCTGGCATTGCACAGATAAGTCCTAAGAAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACCCTTGGCCTGATCCCTGGCATTGCACAGATAAGTCCTAAGAAAT  350

seq1  ATTCATCTGTATCCACTTGCTACCAAGCCTGATGACTTGAATTCAATCCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCATCTGTATCCACTTGCTACCAAGCCTGATGACTTGAATTCAATCCC  400

seq1  TTGAACCCACGTGGTGGAAGGGGACCTAACTCCCAAGAGCTGTCCTGTGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAACCCACGTGGTGGAAGGGGACCTAACTCCCAAGAGCTGTCCTGTGA  450

seq1  TTTTCACATTCAGTCCATGGTGCCTTTCTCCCCCAAATGCATAAATAAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACATTCAGTCCATGGTGCCTTTCTCCCCCAAATGCATAAATAAAT  500

seq1  ATAAAATAAAAACAAAAAACAAAAAGCAAAACCCCTTGGTACATTTACAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAATAAAAACAAAAAACAAAAAGCAAAACCCCTTGGTACATTTACAA  550

seq1  CTATAATTAGGATTTTGAACTCTTGAAAAGAATCTGTTATGCTTTTTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATAATTAGGATTTTGAACTCTTGAAAAGAATCTGTTATGCTTTTTTAT  600

seq1  TCTTCCTAAAGCTCCATTCTCTGAGAATCCTCCAGATTTCAGATTCTCTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTAAAGCTCCATTCTCTGAGAATCCTCCAGATTTCAGATTCTCTG  650

seq1  TTTAATAAAGCCTTTTTAGATATCTTAATGGAAATAGGCCAAGTACTACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATAAAGCCTTTTTAGATATCTTAATGGAAATAGGCCAAGTACTACA  700

seq1  AATCCCTGTACAACAGTGGTTTGAAAGCATTTTCAGCTTGGAAGCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCTGTACAACAGTGGTTTGAAAGCATTTTCAGCTTGGAAGCTTTCT  750

seq1  TATTTGAGATGGGAGGAATATTGTC-TTTTCCTTTATACTAAATATGCTG  799
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TATTTGAGATGGGAGGAATATTGTCTTTTTCCTTTATACTAAATATGCTG  800

seq1  GAAGACACAGAACTGTGCATGTACTGAGACTCTAGAAAAAAATGAGGATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACACAGAACTGTGCATGTACTGAGACTCTAGAAAAAAATGAGGATG  850

seq1  AACCAGGGAGATGCCTCAGTGCTAGGAGCACTGGTCGCTCTTACAGAGGA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGGGAGATGCCTCAGTGCTAGGAGCACTGGTCGCTCTTACAGAGGA  900

seq1  TTGGTGACTCAGTTCCTAGCACTCACATTGAGGCTAACCATCTATAATTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTGACTCAGTTCCTAGCACTCACATTGAGGCTAACCATCTATAATTC  950

seq1  CAGAGCCAGGGGATTCAGTGCCATTTTCTGGCTTCTAGACACTGGATGCT  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCCAGGGGATTCAGTGCCATTTTCTGGCTTCTAGACACTGGATGCT  1000

seq1  CGTGATGCACAGACATACATGAAATAAAAATAAACAAGGTAAAAGTAACC  1049
      ||||||||||||||||||||||||||||| |||||||||| ||||||  |
seq2  CGTGATGCACAGACATACATGAAATAAAATTAAACAAGGT-AAAGTA--C  1047

seq1  AAGAGCAGAAGATACAGTTTGCTTATGAGCTAGCCTAAT-GTGAG-AGGG  1097
       ||||||||  |||||| ||||||||||||||||||||| ||||| ||||
seq2  CAGAGCAGAGAATACAG-TTGCTTATGAGCTAGCCTAATGGTGAGAAGGG  1096

seq1  ACAGACAAGTTACTTGCATGGGAAAGG-GCAGTA  1130
      |||||  |||||||||||||| |||||  |||||
seq2  ACAGAACAGTTACTTGCATGGTAAAGGTCCAGTA  1130