BAC Information

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BAC

Clone NameB6Ng01-213C06
Chromosome4 (Build37)
Map Location 66,711,766 - 66,856,794
singlet/doubletdoublet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213C06.bB6Ng01-213C06.g
ACCGA030756GA030757
length9671,147
definitionB6Ng01-213C06.b B6Ng01-213C06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,711,766 - 66,712,461)(66,855,643 - 66,856,794)
sequence
gaattcagaaatatcacagtaacaggataaggctgatgaagtctaacaca
gataggaacttgataaattgagattctgaactatttaggcagaaagcttc
actctaaagtgagaatagttttcctatattagtaaaatgctaaataaaaa
tttatttctaagtatcaaaaccagtgtctctgtatctgtcacatacagta
atgtccacacttcagtcttcatttttcttgagtttcatgtatttaacaaa
ttgtatcttatatcttgggtatcctaggttttgggctaatatccacttat
cagtgagtacatattgtgtgagttcctttgtgaatgtgttaacctcactc
aggatgatgccctccaggtccatccatttggctaggaatttcataaattc
attctttttaatagctgagtagtactccattgtgtaaatgtaccacattt
tctgtatccattcctctgttgaggggcatctgggttctttccagcttctg
gctattataaataaggctgctatgaacatagtgaagcatgtgtccttctt
accggttggaacattttctgggcacatgcccaggagaggtattgcaggat
cacctggtagtactatgtccaattttctgaggaaccgccagactgatttc
cagagtggttgtacaagcctgcaatcccaccaacaatggaggagtgttcc
tctttctcaacatccttgtcagcatctgctgtcacctgaatttttgatct
tagccattctgactggtgtgaggtggaatctcagggttgctttgatttgc
atttccctgatgattaaggatgttgaacattttttcaggtgcttctctgc
cattcggtattcctcaggtgagaaatctttgttcattttctgagccccat
tttttaatggggttatttgattttatggagtctacctgcttgagttcttt
atatatattggatatta

gaattctttgaggagtccatttctacctactataaaattgaaacatccaa
aggaaaggtagattgtctaacatgttctatcatatagagaaaatagtact
gccttaaagacaccacctcttcatttctatacagctttagttatttaata
ttttgggatgagtgagatactcaatattcattaaaattcctcttcttgaa
tgttaagctatcttaacttttactttaatcaaatcataatatttaatact
gcttatcaaggtttgtgattaagaccttaaaaatgtacatataacatgta
ttcacagaataaactgaattaatgatctcaaatgcgaaacacaaatattg
cctttatagtttgaacactggagtggaaaggcaaatacaagctcaatgtt
acctccatccttttgactaacccacaatctacctagggccaatgacttcc
tgttttgttttttttttttcatttttttgaggtatttcaaagagattata
taccataattctctaggttgttcctagatcctttatcatcatctcatatt
gcattgcaataaatatgcaagaattggtattaagcttggcatattttctg
tgacaaaaattgttatgtggacaatttatcttaatgtttacctccatatg
tgaaggtctccacatctaccatgagaactaattatatgcaaattctgtac
atggtagaggtcaggctgagattgaaccaaagtccttcagcttccagttc
agtggacatttacttacctaaggctctgccttagtttcaaagccacatgt
agaaacatctgtctgcagtcacccaagcagtttttccagattgctttcat
tagtcatttaacacatacaaaatccttgccagaaaagcaatctaaccaag
gagctgaagctatcaagatagtttaagaccgtatgtaatattagttaaaa
tgttggtaaaggaagatagttctcaaactgaatatgactaaagttttaaa
tgtttagtttcagttcaaagtacttgtcattttcttcaaccttacagaac
acagactagagagctattccacagattccgtgcgtaaagttaatttgaaa
cctaatgcaaagaaaatgctgacatggcatttagaaggtaccgaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66711766_66712461
seq2: B6Ng01-213C06.b_49_744

seq1  GAATTCAGAAATATCACAGTAACAGGATAAGGCTGATGAAGTCTAACACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAAATATCACAGTAACAGGATAAGGCTGATGAAGTCTAACACA  50

seq1  GATAGGAACTTGATAAATTGAGATTCTGAACTATTTAGGCAGAAAGCTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGGAACTTGATAAATTGAGATTCTGAACTATTTAGGCAGAAAGCTTC  100

seq1  ACTCTAAAGTGAGAATAGTTTTCCTATATTAGTAAAATGCTAAATAAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTAAAGTGAGAATAGTTTTCCTATATTAGTAAAATGCTAAATAAAAA  150

seq1  TTTATTTCTAAGTATCAAAACCAGTGTCTCTGTATCTGTCACATACAGTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTTCTAAGTATCAAAACCAGTGTCTCTGTATCTGTCACATACAGTA  200

seq1  ATGTCCACACTTCAGTCTTCATTTTTCTTGAGTTTCATGTATTTAACAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCCACACTTCAGTCTTCATTTTTCTTGAGTTTCATGTATTTAACAAA  250

seq1  TTGTATCTTATATCTTGGGTATCCTAGGTTTTGGGCTAATATCCACTTAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTATCTTATATCTTGGGTATCCTAGGTTTTGGGCTAATATCCACTTAT  300

seq1  CAGTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTAACCTCACTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGAGTACATATTGTGTGAGTTCCTTTGTGAATGTGTTAACCTCACTC  350

seq1  AGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGATGCCCTCCAGGTCCATCCATTTGGCTAGGAATTTCATAAATTC  400

seq1  ATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTTTTAATAGCTGAGTAGTACTCCATTGTGTAAATGTACCACATTT  450

seq1  TCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATCCATTCCTCTGTTGAGGGGCATCTGGGTTCTTTCCAGCTTCTG  500

seq1  GCTATTATAAATAAGGCTGCTATGAACATAGTGAAGCATGTGTCCTTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATTATAAATAAGGCTGCTATGAACATAGTGAAGCATGTGTCCTTCTT  550

seq1  ACCGGTTGGAACATTTTCTGGGCACATGCCCAGGAGAGGTATTGCAGGAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCGGTTGGAACATTTTCTGGGCACATGCCCAGGAGAGGTATTGCAGGAT  600

seq1  CACCTGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGGTAGTACTATGTCCAATTTTCTGAGGAACCGCCAGACTGATTTC  650

seq1  CAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTG  696
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTGGTTGTACAAGCCTGCAATCCCACCAACAATGGAGGAGTG  696


seq1: chr4_66855643_66856794
seq2: B6Ng01-213C06.g_66_1212 (reverse)

seq1  GATTCAGTACTTTCTAAATGCAATGTCAGCATTTTCTTTCCACTAGGTTT  50
      ||||| |||| |||||||||| ||||||||||||||||| || |||||||
seq2  GATTCGGTACCTTCTAAATGCCATGTCAGCATTTTCTTTGCATTAGGTTT  50

seq1  CAATAAACCTCTACGCACGG-ATCTGT-GAATAGCTCCTCTAGTCTGTGT  98
      |||   | || ||||||||| |||||| |||||||| |||||||||||||
seq2  CAAATTAACTTTACGCACGGAATCTGTGGAATAGCT-CTCTAGTCTGTGT  99

seq1  CTGGTACAGGTTGGAG-AAATGACAAGGTACTTTTGAACTGAAACTAAAC  147
         ||| |||||| || ||||||||| |||| ||||||||||||||||| 
seq2  TCTGTA-AGGTTGAAGAAAATGACAA-GTAC-TTTGAACTGAAACTAAA-  145

seq1  CATTTAAAACTTTAAGTCATATTCAGTTTGAGAACTATCTTCCTTTTACC  197
      ||||||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  CATTTAAAACTTT-AGTCATATTCAGTTTGAGAACTATCTTCC-TTTACC  193

seq1  AACATTTTAACTAATATTACATACGGTCTTAAACTATCTTGATAGCTTCA  247
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTTAACTAATATTACATACGGTCTTAAACTATCTTGATAGCTTCA  243

seq1  GCCTCCTTGGTTAGATTGCTTTTCTGGCAAGGATTTTGTATGTGTTAAAT  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  G-CTCCTTGGTTAGATTGCTTTTCTGGCAAGGATTTTGTATGTGTTAAAT  292

seq1  GACTAATGAAAGCAATCTGGAAAAACTGCTTGGGTGACTGCAGACAGATG  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAATGAAAGCAATCTGGAAAAACTGCTTGGGTGACTGCAGACAGATG  342

seq1  TTTCTACATGTGGCTTTGAAACTAAGGCAGAGCCTTAGGTAAGTAAATGT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTACATGTGGCTTTGAAACTAAGGCAGAGCCTTAGGTAAGTAAATGT  392

seq1  CCACTGAACTGGAAGCTGAAGGACTTTGGTTCAATCTCAGCCTGACCTCT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACTGAACTGGAAGCTGAAGGACTTTGGTTCAATCTCAGCCTGACCTCT  442

seq1  ACCATGTACAGAATTTGCATATAATTAGTTCTCATGGTAGATGTGGAGAC  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATGTACAGAATTTGCATATAATTAGTTCTCATGGTAGATGTGGAGAC  492

seq1  CTTCACATATGGAGGTAAACATTAAGATAAATTGTCCACATAACAATTTT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCACATATGGAGGTAAACATTAAGATAAATTGTCCACATAACAATTTT  542

seq1  TGTCACAGAAAATATGCCAAGCTTAATACCAATTCTTGCATATTTATTGC  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACAGAAAATATGCCAAGCTTAATACCAATTCTTGCATATTTATTGC  592

seq1  AATGCAATATGAGATGATGATAAAGGATCTAGGAACAACCTAGAGAATTA  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCAATATGAGATGATGATAAAGGATCTAGGAACAACCTAGAGAATTA  642

seq1  TGGTATATAATCTCTTTGAAATACCTCAAAAAAATGAAAAAAAAAAAACA  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTATATAATCTCTTTGAAATACCTCAAAAAAATGAAAAAAAAAAAACA  692

seq1  AAACAGGAAGTCATTGGCCCTAGGTAGATTGTGGGTTAGTCAAAAGGATG  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGGAAGTCATTGGCCCTAGGTAGATTGTGGGTTAGTCAAAAGGATG  742

seq1  GAGGTAACATTGAGCTTGTATTTGCCTTTCCACTCCAGTGTTCAAACTAT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGTAACATTGAGCTTGTATTTGCCTTTCCACTCCAGTGTTCAAACTAT  792

seq1  AAAGGCAATATTTGTGTTTCGCATTTGAGATCATTAATTCAGTTTATTCT  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGCAATATTTGTGTTTCGCATTTGAGATCATTAATTCAGTTTATTCT  842

seq1  GTGAATACATGTTATATGTACATTTTTAAGGTCTTAATCACAAACCTTGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATACATGTTATATGTACATTTTTAAGGTCTTAATCACAAACCTTGA  892

seq1  TAAGCAGTATTAAATATTATGATTTGATTAAAGTAAAAGTTAAGATAGCT  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCAGTATTAAATATTATGATTTGATTAAAGTAAAAGTTAAGATAGCT  942

seq1  TAACATTCAAGAAGAGGAATTTTAATGAATATTGAGTATCTCACTCATCC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATTCAAGAAGAGGAATTTTAATGAATATTGAGTATCTCACTCATCC  992

seq1  CAAAATATTAAATAACTAAAGCTGTATAGAAATGAAGAGGTGGTGTCTTT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTAAATAACTAAAGCTGTATAGAAATGAAGAGGTGGTGTCTTT  1042

seq1  AAGGCAGTACTATTTTCTCTATATGATAGAACATGTTAGACAATCTACCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCAGTACTATTTTCTCTATATGATAGAACATGTTAGACAATCTACCT  1092

seq1  TTCCTTTGGATGTTTCAATTTTATAGTAGGTAGAAATGGACTCCTCAAAG  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTGGATGTTTCAATTTTATAGTAGGTAGAAATGGACTCCTCAAAG  1142

seq1  AATTC  1152
      |||||
seq2  AATTC  1147


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