BAC Information

Click to search

BAC

Clone NameB6Ng01-213E21
Chromosome4 (Build37)
Map Location 85,560,965 - 85,661,020
singlet/doubletdoublet
Overlap geneLOC668052
Upstream geneD530005L17Rik, LOC622811, LOC100040303, Sh3gl2, A930009N24
Downstream geneAdamtsl1, 4930500O09Rik, Rraga, 6230416J20Rik, LOC100040388, Adfp, EG624685, Dennd4c, Rps6, Asah3l, Slc24a2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213E21.bB6Ng01-213E21.g
ACCGA030870GA030871
length1,1831,154
definitionB6Ng01-213E21.b B6Ng01-213E21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(85,659,840 - 85,661,020)(85,560,965 - 85,562,122)
sequence
gaattccatatacatagtaactgtcagccacgccatctgggttccctttt
cttcttaaaggaatgaaagaagtgggctcaatgaagaaatgccttaaaat
tagacttaaggataaaataatggctagcccgagggagagacatattagtt
tggagtgtcttttggaaagatacagagaactgaggttcttaccagcaccg
gctgtgactttgatacagacaggttctattaaactaatccttgccatttt
actcgtgtgatagtagactgaatcagcagataacattatgatgattccta
atgctcaggtggatacagtccatctttccacacctcacattggttccttt
taataacaatcatgtgagtagcaaaaaattattggaattcaaaaataaaa
tgagaataaagtcttggactccagattgattttctctacttagcattatt
tttttttaatcccatgattattatgtttgatttgagaacagtttttgata
attcttggtagtctgctatggaacaaaaaggaaaacctacccaactcaac
atttacaggaacatttcctattgtctgggctctctgttagtaaatcaggg
ccaatataaagcagtatagaaaagactccatactttatcttgtcagcatt
tttatttaattaaaaacatcatctgtagctgatacctaactgagatgagt
agattccaaacatttgatcaatgagtagatcaagtgagatctattcagct
gacattttaggaaagggttctattgactttgtgtttggtctcaaaagagt
atactatcacctaatacacaagggacaaggctgttcctatggaagtgttg
aagatttttggttttctaacaacactttaaatgtcagaggttttattggc
tgatgagaaagatggcaattacatatcacatgatctgcacatcctgcaga
caatagttgtccttcttccaatatagtttggttatctattagtgcacatt
tgggtctgaggagcctgaaattctgctccccacatcagtgcatgatagag
ttggacatgaaaataaagctgtaagaattgggggtataattgtgattgtt
acaccaaaatgttgggggcgagcctgagaatgaatataagaaagacttta
atagagcaaatgctgaccatttttaggaaccag
gaattctccccttcttgtgtaagaaaacaggagtgcagaaagggctagaa
ttctttggggcttttgttgttgggtttttgtttgtttgttttctttaagt
cctcagttgattcataaggaaacaatgcaccaaggactcttcctaataga
tacttgaaaggctcatgaaagcaaacagcagccctagcttggagttgacc
ctgtggaacctgaaggtcacagtgcattcctagtttccatttcccgtttg
tttttcagcagcaaacacttccttgtcccagaactctctctggctcttac
aataaggaagctattgttctaaagcagacaaacagatctgctggagctgc
aagctttgagcaggggtcatctttaaagggaactgggcctgagtttatct
acctcttcctgtctttatgagcatacactcctctttcccctttggatcaa
tgggttgtacgttactttgggttggatcacattaattctcttctgataat
ctagagatggaaatgtacctctctgagacaagaaaattttcctgggtgtg
gggcacattgaactatttgatgtctctggtagcggggatttgattgtggt
aatattgttaccgtatggggagatatgtaactattaaaagtgggttgaga
attccagcatacttccctgggaccaccaagatgatgaattacatactcaa
ttctaaagaactaaggcaaagaagaattccacattttaaattggagtatc
atgtcaaaatgaaaaccttattataaataaaagtccatacacacattgga
acaaaatctcttcagctctgcagagtatctacatgacaccaaaatagtta
gaatgcttcagaattatttaaaaaaacatgaatcagcatagctgtcatca
tcctttatccctctcttcctctctgatgtagcactgttctttctcgtccc
cggaacaaaaattgggttagcactgtcttgaaatgtgactgcttttgggg
gtttcaggtcttctgcacatgatattttatcgctgaggctgcggtgggta
gctggaaccaattgtgcctctgagtagctttctgtttcagccctgccttg
gttttaaggtggggttgactgcagcattcaaggtagcagccagcattccg
aggc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_85659840_85661020
seq2: B6Ng01-213E21.b_49_1231 (reverse)

seq1  CTGGTTCTTAAAAAATGGCTCAGCATTTTTGCTCTA-TAAAGTC-TTCCT  48
      ||||||| | |||||||| ||||||  ||||||||| ||||||| ||| |
seq2  CTGGTTCCT-AAAAATGG-TCAGCA--TTTGCTCTATTAAAGTCTTTCTT  46

seq1  CTATTCCATCTCA-GCTCGCCCC--ACATTTT-GTGTA--CATCACATTA  92
       |||||  ||||| |||||||||  ||||||| |||||   |||||| | 
seq2  ATATTCATTCTCAGGCTCGCCCCCAACATTTTGGTGTAACAATCACAATT  96

seq1  TTACCCCCATTTCTTACAGCTTTATTTTCATGTCCAACTCTATTCATGCA  142
       |||||||| |||||||||||||||||||||||||||||||| |||||||
seq2  ATACCCCCAATTCTTACAGCTTTATTTTCATGTCCAACTCTA-TCATGCA  145

seq1  CTGATGTGGGGAGCAGATTTTCAGGCTCCTCAGACCCAAATGTGGCACTA  192
      ||||||||||||||||| ||||||||||||||||||||||||| ||||||
seq2  CTGATGTGGGGAGCAGAATTTCAGGCTCCTCAGACCCAAATGT-GCACTA  194

seq1  ATAGATAACCAAACTATATTGGAAGAAGGACAACTATTGTCTGCAGGATG  242
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGATAACCAAACTATATTGGAAGAAGGACAACTATTGTCTGCAGGATG  244

seq1  TGCAGATCATGTGATATGTAATTGCCATCTTTCTCATCAGCCAATAAAAC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGATCATGTGATATGTAATTGCCATCTTTCTCATCAGCCAATAAAAC  294

seq1  CTCTGACATTTAAAGTGTTGTTAGAAAACCAAAAATCTTCAACACTTCCA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGACATTTAAAGTGTTGTTAGAAAACCAAAAATCTTCAACACTTCCA  344

seq1  TAGGAACAGCCTTGTCCCTTGTGTATTAGGTGATAGTATACTCTTTTGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAACAGCCTTGTCCCTTGTGTATTAGGTGATAGTATACTCTTTTGAG  394

seq1  ACCAAACACAAAGTCAATAGAACCCTTTCCTAAAATGTCAGCTGAATAGA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAACACAAAGTCAATAGAACCCTTTCCTAAAATGTCAGCTGAATAGA  444

seq1  TCTCACTTGATCTACTCATTGATCAAATGTTTGGAATCTACTCATCTCAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCACTTGATCTACTCATTGATCAAATGTTTGGAATCTACTCATCTCAG  494

seq1  TTAGGTATCAGCTACAGATGATGTTTTTAATTAAATAAAAATGCTGACAA  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGTATCAGCTACAGATGATGTTTTTAATTAAATAAAAATGCTGACAA  544

seq1  GATAAAGTATGGAGTCTTTTCTATACTGCTTTATATTGGCCCTGATTTAC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAAGTATGGAGTCTTTTCTATACTGCTTTATATTGGCCCTGATTTAC  594

seq1  TAACAGAGAGCCCAGACAATAGGAAATGTTCCTGTAAATGTTGAGTTGGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGAGAGCCCAGACAATAGGAAATGTTCCTGTAAATGTTGAGTTGGG  644

seq1  TAGGTTTTCCTTTTTGTTCCATAGCAGACTACCAAGAATTATCAAAAACT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTTTCCTTTTTGTTCCATAGCAGACTACCAAGAATTATCAAAAACT  694

seq1  GTTCTCAAATCAAACATAATAATCATGGGATTAAAAAAAAATAATGCTAA  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCAAATCAAACATAATAATCATGGGATTAAAAAAAAATAATGCTAA  744

seq1  GTAGAGAAAATCAATCTGGAGTCCAAGACTTTATTCTCATTTTATTTTTG  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAGAAAATCAATCTGGAGTCCAAGACTTTATTCTCATTTTATTTTTG  794

seq1  AATTCCAATAATTTTTTGCTACTCACATGATTGTTATTAAAAGGAACCAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAATAATTTTTTGCTACTCACATGATTGTTATTAAAAGGAACCAA  844

seq1  TGTGAGGTGTGGAAAGATGGACTGTATCCACCTGAGCATTAGGAATCATC  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGGTGTGGAAAGATGGACTGTATCCACCTGAGCATTAGGAATCATC  894

seq1  ATAATGTTATCTGCTGATTCAGTCTACTATCACACGAGTAAAATGGCAAG  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTTATCTGCTGATTCAGTCTACTATCACACGAGTAAAATGGCAAG  944

seq1  GATTAGTTTAATAGAACCTGTCTGTATCAAAGTCACAGCCGGTGCTGGTA  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAGTTTAATAGAACCTGTCTGTATCAAAGTCACAGCCGGTGCTGGTA  994

seq1  AGAACCTCAGTTCTCTGTATCTTTCCAAAAGACACTCCAAACTAATATGT  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACCTCAGTTCTCTGTATCTTTCCAAAAGACACTCCAAACTAATATGT  1044

seq1  CTCTCCCTCGGGCTAGCCATTATTTTATCCTTAAGTCTAATTTTAAGGCA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCGGGCTAGCCATTATTTTATCCTTAAGTCTAATTTTAAGGCA  1094

seq1  TTTCTTCATTGAGCCCACTTCTTTCATTCCTTTAAGAAGAAAAGGGAACC  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATTGAGCCCACTTCTTTCATTCCTTTAAGAAGAAAAGGGAACC  1144

seq1  CAGATGGCGTGGCTGACAGTTACTATGTATATGGAATTC  1181
      |||||||||||||||||||||||||||||||||||||||
seq2  CAGATGGCGTGGCTGACAGTTACTATGTATATGGAATTC  1183

seq1: chr4_85560965_85562122
seq2: B6Ng01-213E21.g_67_1220

seq1  GAATTCTCCCCTTCTTGTGTAAGAAAACAGGAGTGCAGAAAGGGCTAGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCCCTTCTTGTGTAAGAAAACAGGAGTGCAGAAAGGGCTAGAA  50

seq1  TTCTTTGGGGCTTTTGTTGTTGGGTTTTTGTTTGTTTGTTTTCTTTAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTGGGGCTTTTGTTGTTGGGTTTTTGTTTGTTTGTTTTCTTTAAGT  100

seq1  CCTCAGTTGATTCATAAGGAAACAATGCACCAAGGACTCTTCCTAATAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGTTGATTCATAAGGAAACAATGCACCAAGGACTCTTCCTAATAGA  150

seq1  TACTTGAAAGGCTCATGAAAGCAAACAGCAGCCCTAGCTTGGAGTTGACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTTGAAAGGCTCATGAAAGCAAACAGCAGCCCTAGCTTGGAGTTGACC  200

seq1  CTGTGGAACCTGAAGGTCACAGTGCATTCCTAGTTTCCATTTCCCGTTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGGAACCTGAAGGTCACAGTGCATTCCTAGTTTCCATTTCCCGTTTG  250

seq1  TTTTTCAGCAGCAAACACTTCCTTGTCCCAGAACTCTCTCTGGCTCTTAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAGCAGCAAACACTTCCTTGTCCCAGAACTCTCTCTGGCTCTTAC  300

seq1  AATAAGGAAGCTATTGTTCTAAAGCAGACAAACAGATCTGCTGGAGCTGC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAGGAAGCTATTGTTCTAAAGCAGACAAACAGATCTGCTGGAGCTGC  350

seq1  AAGCTTTGAGCAGGGGTCATCTTTAAAGGGAACTGGGCCTGAGTTTATCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTTTGAGCAGGGGTCATCTTTAAAGGGAACTGGGCCTGAGTTTATCT  400

seq1  ACCTCTTCCTGTCTTTATGAGCATACACTCCTCTTTCCCCTTTGGATCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTCTTCCTGTCTTTATGAGCATACACTCCTCTTTCCCCTTTGGATCAA  450

seq1  TGGGTTGTACGTTACTTTGGGTTGGATCACATTAATTCTCTTCTGATAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTGTACGTTACTTTGGGTTGGATCACATTAATTCTCTTCTGATAAT  500

seq1  CTAGAGATGGAAATGTACCTCTCTGAGACAAGAAAATTTTCCTGGGTGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGATGGAAATGTACCTCTCTGAGACAAGAAAATTTTCCTGGGTGTG  550

seq1  GGGCACATTGAACTATTTGATGTCTCTGGTAGCGGGGATTTGATTGTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCACATTGAACTATTTGATGTCTCTGGTAGCGGGGATTTGATTGTGGT  600

seq1  AATATTGTTACCGTATGGGGAGATATGTAACTATTAAAAGTGGGTTGAGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTGTTACCGTATGGGGAGATATGTAACTATTAAAAGTGGGTTGAGA  650

seq1  ATTCCAGCATACTTCCCTGGGACCACCAAGATGATGAATTACATACTCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCAGCATACTTCCCTGGGACCACCAAGATGATGAATTACATACTCAA  700

seq1  TTCTAAAGAACTAAGGCAAAGAAGAATTCCACATTTTAAATTGGAGTATC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAAAGAACTAAGGCAAAGAAGAATTCCACATTTTAAATTGGAGTATC  750

seq1  ATGTCAAAATGAAAACCTTATTATAAATAAAAGTCCATACACACATTGGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCAAAATGAAAACCTTATTATAAATAAAAGTCCATACACACATTGGA  800

seq1  ACAAAATCTCTTCAGCTCTGCAGAGTATCTACATGACACCAAAATAGTTA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAATCTCTTCAGCTCTGCAGAGTATCTACATGACACCAAAATAGTTA  850

seq1  GAATGCTTCAGAATTATTTAAAAAAACAATGAATCAGCATAGCTGTCATC  900
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GAATGCTTCAGAATTATTTAAAAAAAC-ATGAATCAGCATAGCTGTCATC  899

seq1  ATCCTTTATCCCTCTCTTCCTCTCTGATGTAGCACTGTTCTTTCTCGTCC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCTTTATCCCTCTCTTCCTCTCTGATGTAGCACTGTTCTTTCTCGTCC  949

seq1  CCGGAACAAAAATT-GGTTAGCACTGTCTTGAAATGTTGAACTGC-TTTG  998
      |||||||||||||| ||||||||||||||||||||||   ||||| ||||
seq2  CCGGAACAAAAATTGGGTTAGCACTGTCTTGAAATGT--GACTGCTTTTG  997

seq1  GGGGTTTCAGGTCTTCCTGCACATGATA-TTTATCGCTGAGGCTGCCGGT  1047
      ||||||||||||||| |||||||||||| |||||||||||||||| ||||
seq2  GGGGTTTCAGGTCTT-CTGCACATGATATTTTATCGCTGAGGCTG-CGGT  1045

seq1  GGGTAAGCTGG-ACCCATTGTG-CTCTGAGTAGCTTTCTGTTTCAAGCCC  1095
      |||| |||||| ||| |||||| ||||||||||||||||||||| |||||
seq2  GGGT-AGCTGGAACCAATTGTGCCTCTGAGTAGCTTTCTGTTTC-AGCCC  1093

seq1  TG-CTTTGTTTTAAGTTGGGTGTTGACTGCAGCATCAAAGGTAAGCAGGC  1144
      || ||| |||||||| |||| ||||||||||||||  ||||| ||||| |
seq2  TGCCTTGGTTTTAAGGTGGG-GTTGACTGCAGCATTCAAGGT-AGCAGCC  1141

seq1  AGGCATTCAGAGGC  1158
      | |||||| |||||
seq2  A-GCATTCCGAGGC  1154