BAC Information

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BAC

Clone NameB6Ng01-213H23
Chromosome4 (Build37)
Map Location 52,983,525 - 53,081,990
singlet/doubletdoublet
Overlap geneOlfr270, 1700054F22Rik, Nipsnap3a, Abca1
Upstream geneLOC100041026, LOC100041038, LOC666724, Smc2, LOC100040883, 4930547C10Rik, LOC100040908, LOC666761, Olfr275, Olfr274-ps1, Olfr273, LOC230185, Olfr272, Olfr271-ps1
Downstream gene4930522O17Rik, AI427809, LOC100041197, Slc44a1, Fsd1l, LOC666483, Fcmd, Tal2, LOC435784, Tmem38b, LOC670124, LOC100041280
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213H23.bB6Ng01-213H23.g
ACCGA031007GA031008
length1,1571,127
definitionB6Ng01-213H23.b B6Ng01-213H23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(52,983,525 - 52,984,677)(53,080,871 - 53,081,990)
sequence
gaattctttctcgtgggactttcccagtatccagaactccagcttttcct
atttgtgctctgcctcatcatgtacttgataatcctcctgggaaacagtc
tgctcattatcattagtatcctggattctcggctccacacccccatgtac
ttttttcttgggaatctctcttttttggacatctgttacacatcctcatc
cattcctcaaatgctcatcatgtttatgtcagcgagaaaatccatctcct
tccttggttgtgctctacaaatggttatctcccttggcttgggttctaca
gagtgtgtcctcctggctgtgatggcctatgataggtatgcagccatttg
caatccactgaggtaccctataatcatgaacaaagtattatatgtgcaca
tggctgtgtggtcctgggtcataggctgtctgaattctctagtgcaaaca
gtcttgacaatggtgttacctttctgtggcaacaatgtcattgatcacct
tacctgtgagatcctggctcttcttaaacttgtatgctcagatatcacca
tgaatgtgcttatcatgacagtggccagtattgttttgttgatgatccct
ctgatgttaatttttgtgtcctatatttttatcctttcttccattctgag
aattaattctgcggaaggaaggaagaaagccttttcaacctgttcagccc
acctaaccgtggtcatcttattctatggttcagcccttttttatgtacat
gaaaacccaagtcaaagtacaccaaagcatctgatgaaatcattggactg
tcttatggagttgtgacgccaatgttgaatcccatcatctacagcttgag
gaataaggaggtcaaagaagccgtgaagaaaattttgagcaaacgtttgt
acctgcggaaaatctgaaaggccttggggcctctgaaactcagaggacgt
gctatgttttcaaagtcagcttgagagaccaaggatgaagctaccattct
cttcaagaatatgttgtgtaaaccttctgagtagtgtagtgtctgcagac
tggtgaaggtgttgtgcccctttcgaatcagtcccttggaggatgctcat
tcaagctgtcttaagtgtttctctgctccatctaactctaatttcatttt
ttcctcg
gaattccagttcatggaattgggcacagcttgcttctgttatttgtgtgc
acatctttgcttgtcctgagggatcttcattctctgtgctcatcagatgt
tgagaaatataactttgagttgaaagttgagtttttcaagaaacctgttt
actcctgtgaggtactggaggcttcaaaccccagcttccaagatgactac
tgaagctagtagaggaaagagtagagtcgtacagagacaggtgacactga
ttatagccaaccctccatttgtgctgcttacagaatccagggagaccgac
ctgctcagtgggatggacggcaaaggctcctaccagctgaagggctggaa
actcacccagcaacagtttgtggcccttttgtggaagaggctgctgattg
ccagacggagccggaagggtttctttgctcaggtgaggtgtgctgggctc
tgccttcttggactggtgaagacaggctaggactgtggtcaagatagaga
tgctgggccagtatgccagtgatttccctgggcttcaaattcttcatctg
aaaatgagcggggatgtgtggctgttagggggatgaaacgaatttattta
gaatggactttgacattacttggggaggtggctataatttagaggagatc
atggcagggacacagtttagacaaaccagttgggaaaattcaactctcat
aacatgagagtcgccatgctgagttgtgcttggcagtgtacttattatta
gaaacatggtgggtatgtttttctcttaattgacgagagcgagagagcta
ggaatggaacaggcccattgattcccccatatcacagtttgcatgctgac
ttatcagttaaagacagctataaagtacttcattctacaaaatgaagaat
tatagagaacacgttcatgaagcccttcccctgcagcccacctgggcaac
aactaactcagagcatgaagcatgaagcctgcagatcttggattggaaat
ctggctcagtgaatcactggctgacttcccctcaggatccatgatgcctc
tagttgtgaatggtgaataatgatactaccaccacaatactacgaaaata
ggatataagcggggcctgattctcact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_52983525_52984677
seq2: B6Ng01-213H23.b_46_1202

seq1  GAATTCTTTCTCGTGGGACTTTCCCAGTATCCAGAACTCCAGCTTTTCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTCGTGGGACTTTCCCAGTATCCAGAACTCCAGCTTTTCCT  50

seq1  ATTTGTGCTCTGCCTCATCATGTACTTGATAATCCTCCTGGGAAACAGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGTGCTCTGCCTCATCATGTACTTGATAATCCTCCTGGGAAACAGTC  100

seq1  TGCTCATTATCATTAGTATCCTGGATTCTCGGCTCCACACCCCCATGTAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCATTATCATTAGTATCCTGGATTCTCGGCTCCACACCCCCATGTAC  150

seq1  TTTTTTCTTGGGAATCTCTCTTTTTTGGACATCTGTTACACATCCTCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTCTTGGGAATCTCTCTTTTTTGGACATCTGTTACACATCCTCATC  200

seq1  CATTCCTCAAATGCTCATCATGTTTATGTCAGCGAGAAAATCCATCTCCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCTCAAATGCTCATCATGTTTATGTCAGCGAGAAAATCCATCTCCT  250

seq1  TCCTTGGTTGTGCTCTACAAATGGTTATCTCCCTTGGCTTGGGTTCTACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGGTTGTGCTCTACAAATGGTTATCTCCCTTGGCTTGGGTTCTACA  300

seq1  GAGTGTGTCCTCCTGGCTGTGATGGCCTATGATAGGTATGCAGCCATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGTGTCCTCCTGGCTGTGATGGCCTATGATAGGTATGCAGCCATTTG  350

seq1  CAATCCACTGAGGTACCCTATAATCATGAACAAAGTATTATATGTGCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCACTGAGGTACCCTATAATCATGAACAAAGTATTATATGTGCACA  400

seq1  TGGCTGTGTGGTCCTGGGTCATAGGCTGTCTGAATTCTCTAGTGCAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTGTGTGGTCCTGGGTCATAGGCTGTCTGAATTCTCTAGTGCAAACA  450

seq1  GTCTTGACAATGGTGTTACCTTTCTGTGGCAACAATGTCATTGATCACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTGACAATGGTGTTACCTTTCTGTGGCAACAATGTCATTGATCACCT  500

seq1  TACCTGTGAGATCCTGGCTCTTCTTAAACTTGTATGCTCAGATATCACCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTGAGATCCTGGCTCTTCTTAAACTTGTATGCTCAGATATCACCA  550

seq1  TGAATGTGCTTATCATGACAGTGGCCAGTATTGTTTTGTTGATGATCCCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATGTGCTTATCATGACAGTGGCCAGTATTGTTTTGTTGATGATCCCT  600

seq1  CTGATGTTAATTTTTGTGTCCTATATTTTTATCCTTTCTTCCATTCTGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATGTTAATTTTTGTGTCCTATATTTTTATCCTTTCTTCCATTCTGAG  650

seq1  AATTAATTCTGCGGAAGGAAGGAAGAAAGCCTTTTCAACCTGTTCAGCCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAATTCTGCGGAAGGAAGGAAGAAAGCCTTTTCAACCTGTTCAGCCC  700

seq1  ACCTAACCGTGGTCATCTTATTCTATGGTTCAGCCC-TTTTTATGTACAT  749
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ACCTAACCGTGGTCATCTTATTCTATGGTTCAGCCCTTTTTTATGTACAT  750

seq1  G-AAACCCAAGTCAAAGTACACCAAAGCATCTGATGAAATCATTGGACTG  798
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAACCCAAGTCAAAGTACACCAAAGCATCTGATGAAATCATTGGACTG  800

seq1  TCTTATGGAGTTGTGACGCCAATGTTGAATCCCATCATCTACAGCTTGAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTATGGAGTTGTGACGCCAATGTTGAATCCCATCATCTACAGCTTGAG  850

seq1  GAATAAGGAGGTCAAAGAAGCCGTGAAGAAAATTTTGAGCAAACGTTTGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAAGGAGGTCAAAGAAGCCGTGAAGAAAATTTTGAGCAAACGTTTGT  900

seq1  ACCTGCGGAAAATCTGAAAGGCCTTGGGGCCTCTGAAACTCAGAGGACGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTGCGGAAAATCTGAAAGGCCTTGGGGCCTCTGAAACTCAGAGGACGT  950

seq1  GCTATGTTTTCAAAGTCAGCTTGAGAGACCAAGGATGAAGCTACCATTCT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTATGTTTTCAAAGTCAGCTTGAGAGACCAAGGATGAAGCTACCATTCT  1000

seq1  CTTCAAG-ATATGTTGTGTAAACCTTCTGAGTAGTGTAGTGTCTGCAGAC  1047
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCAAGAATATGTTGTGTAAACCTTCTGAGTAGTGTAGTGTCTGCAGAC  1050

seq1  T-GTG-AGGTTGTGTGCCCC-TTCGAATCAGCCCCTT-GAGGATGCTCA-  1092
      | ||| ||||  |||||||| |||||||||| ||||| ||||||||||| 
seq2  TGGTGAAGGTGTTGTGCCCCTTTCGAATCAGTCCCTTGGAGGATGCTCAT  1100

seq1  TCAAGTCTGTCTTTAGTGTTCCTTCTGTCTCCCTTCTAACTCTATTTCTT  1142
      ||||| ||||||| |||||| | |||| || || |||||||||| ||   
seq2  TCAAG-CTGTCTTAAGTGTTTC-TCTG-CT-CCATCTAACTCTAATTTCA  1146

seq1  TTTTTTCCTCG  1153
      |||||||||||
seq2  TTTTTTCCTCG  1157

seq1: chr4_53080871_53081990
seq2: B6Ng01-213H23.g_66_1192 (reverse)

seq1  AGTGAGAATCA-GCCCCCTTAATATCCTA-TTTCGTAGTTATTGGTGGTG  48
      ||||||||||| |||||  | |||||||| |||||||| |||| ||||||
seq2  AGTGAGAATCAGGCCCCGCTTATATCCTATTTTCGTAG-TATT-GTGGTG  48

seq1  TTAGTATCATTA-TCACCATTCACAAACTAGA-GCATCATGGAT-CTGA-  94
       ||||||||||| ||||||||||| ||||||| ||||||||||| |||| 
seq2  GTAGTATCATTATTCACCATTCAC-AACTAGAGGCATCATGGATCCTGAG  97

seq1  GGGAAGTCAGCCAGTGATTCACTGAACCAGATTCCAAATCC-AGATCTGC  143
      ||||||||||||||||||||||||| ||||||| | ||||| ||||||||
seq2  GGGAAGTCAGCCAGTGATTCACTGAGCCAGATTTCCAATCCAAGATCTGC  147

seq1  AGGCTTCATGC-TCATGCTCTGAGTTAG-TGTTGCCCAGGTGGGCTGCAG  191
      ||||||||||| |||||||||||||||| |||||||||||||||||||||
seq2  AGGCTTCATGCTTCATGCTCTGAGTTAGTTGTTGCCCAGGTGGGCTGCAG  197

seq1  GG--AGGGCTTCATGGACGTGTTCTCTATAATTCTTCATTTTGTAGAATG  239
      ||  ||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GGGAAGGGCTTCATGAACGTGTTCTCTATAATTCTTCATTTTGTAGAATG  247

seq1  AAGTAACTTTATAGCTGTCTTTAACTGATAAGTCAGCATGCAAACTGTGA  289
      |||| |||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGT-ACTTTATAGCTGTCTTTAACTGATAAGTCAGCATGCAAACTGTGA  296

seq1  TATGGGGGAATCAATGGGCCTGTTCCATTCCTAGCTCTCTCGCTCTCGTC  339
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGGGGAATCAATGGGCCTGTTCCATTCCTAGCTCTCTCGCTCTCGTC  346

seq1  AATTAAGAGAAAAACATACCCACCATGTTTCTAATAATAAGTACACTGCC  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAGAGAAAAACATACCCACCATGTTTCTAATAATAAGTACACTGCC  396

seq1  AAGCACAACTCAGCATGGCGACTCTCATGTTATGAGAGTTGAATTTTCCC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCACAACTCAGCATGGCGACTCTCATGTTATGAGAGTTGAATTTTCCC  446

seq1  AACTGGTTTGTCTAAACTGTGTCCCTGCCATGATCTCCTCTAAATTATAG  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGGTTTGTCTAAACTGTGTCCCTGCCATGATCTCCTCTAAATTATAG  496

seq1  CCACCTCCCCAAGTAATGTCAAAGTCCATTCTAAATAAATTCGTTTCATC  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTCCCCAAGTAATGTCAAAGTCCATTCTAAATAAATTCGTTTCATC  546

seq1  CCCCTAACAGCCACACATCCCCGCTCATTTTCAGATGAAGAATTTGAAGC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTAACAGCCACACATCCCCGCTCATTTTCAGATGAAGAATTTGAAGC  596

seq1  CCAGGGAAATCACTGGCATACTGGCCCAGCATCTCTATCTTGACCACAGT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGAAATCACTGGCATACTGGCCCAGCATCTCTATCTTGACCACAGT  646

seq1  CCTAGCCTGTCTTCACCAGTCCAAGAAGGCAGAGCCCAGCACACCTCACC  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAGCCTGTCTTCACCAGTCCAAGAAGGCAGAGCCCAGCACACCTCACC  696

seq1  TGAGCAAAGAAACCCTTCCGGCTCCGTCTGGCAATCAGCAGCCTCTTCCA  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAAAGAAACCCTTCCGGCTCCGTCTGGCAATCAGCAGCCTCTTCCA  746

seq1  CAAAAGGGCCACAAACTGTTGCTGGGTGAGTTTCCAGCCCTTCAGCTGGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGGGCCACAAACTGTTGCTGGGTGAGTTTCCAGCCCTTCAGCTGGT  796

seq1  AGGAGCCTTTGCCGTCCATCCCACTGAGCAGGTCGGTCTCCCTGGATTCT  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGCCTTTGCCGTCCATCCCACTGAGCAGGTCGGTCTCCCTGGATTCT  846

seq1  GTAAGCAGCACAAATGGAGGGTTGGCTATAATCAGTGTCACCTGTCTCTG  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAGCAGCACAAATGGAGGGTTGGCTATAATCAGTGTCACCTGTCTCTG  896

seq1  TACGACTCTACTCTTTCCTCTACTAGCTTCAGTAGTCATCTTGGAAGCTG  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACGACTCTACTCTTTCCTCTACTAGCTTCAGTAGTCATCTTGGAAGCTG  946

seq1  GGGTTTGAAGCCTCCAGTACCTCACAGGAGTAAACAGGTTTCTTGAAAAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTTTGAAGCCTCCAGTACCTCACAGGAGTAAACAGGTTTCTTGAAAAA  996

seq1  CTCAACTTTCAACTCAAAGTTATATTTCTCAACATCTGATGAGCACAGAG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTTTCAACTCAAAGTTATATTTCTCAACATCTGATGAGCACAGAG  1046

seq1  AATGAAGATCCCTCAGGACAAGCAAAGATGTGCACACAAATAACAGAAGC  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAAGATCCCTCAGGACAAGCAAAGATGTGCACACAAATAACAGAAGC  1096

seq1  AAGCTGTGCCCAATTCCATGAACTGGAATTC  1120
      |||||||||||||||||||||||||||||||
seq2  AAGCTGTGCCCAATTCCATGAACTGGAATTC  1127