BAC Information

Click to search

BAC

Clone NameB6Ng01-213P04
Chromosome4 (Build37)7 (Build37)
Map Location 119,059,382 - 119,060,359148,634,952 - 148,635,613
singlet/doubletsingletsinglet
Overlap gene1700041C02Rik
Upstream geneBC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691, Ermap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, Ldha-ps2
Downstream geneLOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-213P04.bB6Ng01-213P04.g
ACCGA031330GA031331
length984459
definitionB6Ng01-213P04.b B6Ng01-213P04.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(119,059,382 - 119,060,359)(148,634,952 - 148,635,613)
sequence
gaattccatggtacagagggccatacaggggtgaaacactgacagccaca
gttcagggtttacccgaacaagaagaggtcttcctgcccctgggtcctgc
cacaggttatgactgtagcagaactcctgaatggtggaaactctctcagc
tacaacagaatcttcggcttgtcttgccctggcttctccttaagggatgc
tacaccctgcattggatctgaaggctctacctgcctgtacctgctcttca
tagatccttcccctgcgcttcctcagtaactgttgggattttgtgttcat
cttcggaccctcctcttgaccagcctgcttcctgtggaggttgccatcat
ggtcgccaccacggacaagaggaaatgatcatatcagaatcactttgggg
ctgcagagatggctcgtagttaagagcaccggctgctttgcagaagacaa
gagttcagctccctgtcctcacagtggctcccaaccattagtaacttcag
tcccctgcagggatccagtgccctttagtgacctctgtgagcaccaaata
cttatgtggtgcacaggacatacacgtagacaaaatacacatacacaaaa
gtaaacacacaaaaataaatacatctaaaagaaatgacattcaagcattt
caaccattagcacgcagcagaagcctcaaggaaaatatctttgtcttggg
agacaacttaagagtagccacacttctcccgtggcctgatgaatttattc
aacacttcactgtcacacaaaagaactgagaaaatagggcagaaagatta
gattaaaaatatcatacccctcccaggcatcatatagaaaaggcaagtct
ggataaaattatttttttctacattgtcagagggaaaggtcatagaagaa
agggacttttgcaagagaggtatactctgctttggcttatgttgtataat
gaaaaaaattaacaataccacacacctcctgggg
actggtcatcttgtgaaaaacacaccaaaatctctgtttagaggacccag
gctctagctgtacctaccacataagagtttttaatacaagaaaataaagt
gagcagggcgtggtggcacatgcctttaatcccagcacttgggaggcaga
ggcaggcggatttctgggttcaaggccagcctgatctacaaagtgagttc
caggacagccagggctatacagagaaaccctgtctcaaaaaaaaaaaaaa
acaaaaaaaaaaaaaaagaagaagaagaagaagaagaaaataaagtaagc
cgggcagtggtggcacacacctttaattccagcacttgggaggcagaggc
aggcagacttctgagtttgaggccagcctgatctacagagtgagttccag
gacagccagggctacacagagaaaccctgtctcaaaaaacccgaaaagag
aagagaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_119059382_119060359
seq2: B6Ng01-213P04.b_45_1028

seq1  GAATTCCATGGTACAGAGGGCCATACAGGGGTGAAACACTGACAGCCACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATGGTACAGAGGGCCATACAGGGGTGAAACACTGACAGCCACA  50

seq1  GTTCAGGGTTTACCCGAACAAGAAGAGGTCTTCCTGCCCCTGGGTCCTGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGGGTTTACCCGAACAAGAAGAGGTCTTCCTGCCCCTGGGTCCTGC  100

seq1  CACAGGTTATGACTGTAGCAGAACTCCTGAATGGTGGAAACTCTCTCAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGGTTATGACTGTAGCAGAACTCCTGAATGGTGGAAACTCTCTCAGC  150

seq1  TACAACAGAATCTTCGGCTTGTCTTGCCCTGGCTTCTCCTTAAGGGATGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAACAGAATCTTCGGCTTGTCTTGCCCTGGCTTCTCCTTAAGGGATGC  200

seq1  TACACCCTGCATTGGATCTGAAGGCTCTACCTGCCTGTACCTGCTCTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACCCTGCATTGGATCTGAAGGCTCTACCTGCCTGTACCTGCTCTTCA  250

seq1  TAGATCCTTCCCCTGCGCTTCCTCAGTAACTGTTGGGATTTTGTGTTCAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCCTTCCCCTGCGCTTCCTCAGTAACTGTTGGGATTTTGTGTTCAT  300

seq1  CTTCGGACCCTCCTCTTGACCAGCCTGCTTCCTGTGGAGGTTGCCATCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGGACCCTCCTCTTGACCAGCCTGCTTCCTGTGGAGGTTGCCATCAT  350

seq1  GGTCGCCACCACGGACAAGAGGAAATGATCATATCAGAATCACTTTGGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCGCCACCACGGACAAGAGGAAATGATCATATCAGAATCACTTTGGGG  400

seq1  CTGCAGAGATGGCTCGTAGTTAAGAGCACCGGCTGCTTTGCAGAAGACAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCAGAGATGGCTCGTAGTTAAGAGCACCGGCTGCTTTGCAGAAGACAA  450

seq1  GAGTTCAGCTCCCTGTCCTCACAGTGGCTCCCAACCATTAGTAACTTCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTTCAGCTCCCTGTCCTCACAGTGGCTCCCAACCATTAGTAACTTCAG  500

seq1  TCCCCTGCAGGGATCCAGTGCCCTTTAGTGACCTCTGTGAGCACCAAATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCTGCAGGGATCCAGTGCCCTTTAGTGACCTCTGTGAGCACCAAATA  550

seq1  CTTATGTGGTGCACAGGACATACACGTAGACAAAATACACATACACAAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTATGTGGTGCACAGGACATACACGTAGACAAAATACACATACACAAAA  600

seq1  GTAAACACACAAAAATAAATACATCTAAAAGAAATGACATTCAAGCATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAACACACAAAAATAAATACATCTAAAAGAAATGACATTCAAGCATTT  650

seq1  CAACCATTAGCACGCAGCAGAAGCCTCAAGGAAAATATCTTTGTCTTGGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCATTAGCACGCAGCAGAAGCCTCAAGGAAAATATCTTTGTCTTGGG  700

seq1  AGACAACTTAAGAGTAGCCACACTTCTCCCGTGGCCTGATGAATTTATTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACAACTTAAGAGTAGCCACACTTCTCCCGTGGCCTGATGAATTTATTC  750

seq1  AACACTTCACTGTCACACAAAAGAACTGAGAAAATAGGGCAGAAAGATTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACTTCACTGTCACACAAAAGAACTGAGAAAATAGGGCAGAAAGATTA  800

seq1  GATTAAAAATATCATACCCCTCCCAGGCATCATATAGAAAAGGCAAGTCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTAAAAATATCATACCCCTCCCAGGCATCATATAGAAAAGGCAAGTCT  850

seq1  GGATAAAATTATTTTTTTCTACATTGTCAGAGGGAAAGGTCATAGAAG-A  899
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GGATAAAATTATTTTTTTCTACATTGTCAGAGGGAAAGGTCATAGAAGAA  900

seq1  AGGGAC-TTTGCAAGAGAGGTATACTCTGCTTTGGCTTATGTTGTAT-AT  947
      |||||| |||||||||||||||||||||||||||||||||||||||| ||
seq2  AGGGACTTTTGCAAGAGAGGTATACTCTGCTTTGGCTTATGTTGTATAAT  950

seq1  GAAAAAAATTAAC-ATA-CACACA-CTTCTGGGG  978
      ||||||||||||| ||| |||||| || ||||||
seq2  GAAAAAAATTAACAATACCACACACCTCCTGGGG  984

seq1: chr7_148634952_148635613
seq2: B6Ng01-213P04.g_182_534 (reverse)

seq1  TCTTCTTTTCTCTTTCTTTCTCTCTCGGTTTTTTGAGACAGGATTTCTCT  50
      |||||| ||||||||       ||  |||||||||||||||| |||||||
seq2  TCTTCTCTTCTCTTT-------TC-GGGTTTTTTGAGACAGGGTTTCTCT  42

seq1  GTGTAG--CTGGCTGTCCTGGAACT---------GACCAGGCTGGCCTTG  89
      ||||||  |||||||||||||||||         || |||||||||||  
seq2  GTGTAGCCCTGGCTGTCCTGGAACTCACTCTGTAGATCAGGCTGGCCTCA  92

seq1  AACTC--AAATCTCCCTGCCTCTGCCTCCCTAGTGCTGGGATTAAAGGTG  137
      |||||  || ||| |||||||||||||||| |||||||| ||||||||||
seq2  AACTCAGAAGTCTGCCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGTG  142

seq1  TGTGCCACCAAGCCCTGCCACAGGTTCCTTCTTAACTAAGGCATACAGAT  187
      ||||||||||    |||||                    ||| |||    
seq2  TGTGCCACCA----CTGCC-------------------CGGCTTAC----  165

seq1  TTCTGGCACCACCGGACTAGTACTTATTTGCAATCAGCCTGGGGCACCCT  237
                             ||||||                    |
seq2  ----------------------TTTATTT--------------------T  173

seq1  CATGGTAAAATGATTGTTCAATTTTTATTTATTTTTTTTTGCCTTGTTGT  287
      | |       |  || |||  || || ||| |||||||||   ||||| |
seq2  CTT------CTTCTTCTTC--TTCTTCTTTTTTTTTTTTT---TTGTT-T  211

seq1  TTTTGTTTTTTTGAGACAGGGTTTCTCTGCCTCCCGAGTGCTGGTATCAA  337
      |||| ||||||||||||||||||||||||                     
seq2  TTTTTTTTTTTTGAGACAGGGTTTCTCTG---------------------  240

seq1  GGGCGTACGCCACCACGCTCGGCTGTTTGTTCAATTTTAAGATTTCTAAA  387
                                                        
seq2  --------------------------------------------------  240

seq1  TAACTAAAAGTAAGAACCCATGTGGCCTGTAAACCCACTTTGTAGACCAT  437
                                                        
seq2  --------------------------------------------------  240

seq1  GATGGCCTTAAATTCACAGGCTTCTGCCTCCTGGCTGCTGAAATTAAAAG  487
                                                        
seq2  --------------------------------------------------  240

seq1  TGTGCACCACCAAGCTGAGCTTGTGTGTGTTTGTTTGTTTGTTTTTGTGG  537
                                                        
seq2  --------------------------------------------------  240

seq1  TTTCTCCTTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGACCAGGCT  587
              ||||||||||||||||||||||||||||||||||| ||||||
seq2  --------TATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGCT  282

seq1  GGCATTGAACTCAGAAATCCGCCTGCCTCTGCCTCTGTCCTGAGTGCTGG  637
      ||| |||||| ||||||||||||||||||||||    |||  ||||||||
seq2  GGCCTTGAACCCAGAAATCCGCCTGCCTCTGCC----TCCCAAGTGCTGG  328

seq1  GATTAAAGGCATTTGCCACCACGCC  662
      |||||||||||| ||||||||||||
seq2  GATTAAAGGCATGTGCCACCACGCC  353