BAC Information

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BAC

Clone NameB6Ng01-214N06
Chromosome4 (Build37)
Map Location 25,663,986 - 25,774,019
singlet/doubletdoublet
Overlap geneFut9, LOC100040780
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732
Downstream geneHn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-214N06.bB6Ng01-214N06.g
ACCGA031971GA031972
length927417
definitionB6Ng01-214N06.b B6Ng01-214N06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,663,986 - 25,664,909)(25,773,597 - 25,774,019)
sequence
gaattcactttattgactggtgtttggcaactcgagcttatttatttctt
ccaaagcttcttttaaacttgtgttttgatgggcatggcttttaagtttg
tttcttcatagccaatgttgaaatcctaacttccaagataatactattat
aaaacatagactttgggcaaaaacgagggcctccaccaatgtaagtgatg
tctttataagaggccacagaaaaggtaggcagcttcctcttcttgttctt
cttttttccctaaaactgtatcatttttattttttatctagttgtttttt
ttattagatattttcttcatgtacatttcaaatgctatcccaaaagtccc
ctataccctcccccgccctgctcccctacccactcactcctacttcttgg
ccctggcgttcccctatactgggacatataaagtccgcaataccaagggg
cctctcttcccaatgatggccgaccaggccatcttctgataaatatgcag
ctagagacacgagctctggggttaattctgggattaattcatactgttgt
tccacctatagggttgcagaccccgtcggctcctttggtactttctctag
ctcctccaatggagggccctgtgttccatcctatagatgactgtgagcca
gcttcttatgaggaccagacatcctttgcgctttccaaattatggtcctt
tcagtatggaatatcattggggcttttcatattgtcagtactacatttat
tatactgtgcacattacatttaaataaaacactgagcaagtgtgctctgt
agagtctaactgtcctcttcaacaacgaattgaggaaaatgatttcatat
attaactacttgcgtagaaagcattatagaaaaacagaaaactgagcagc
gtaatattttatcaataacagtatccc

ttattcctcttttcatatgcccatagttggtaatttgattttacatgctg
cccccaaacttgttcatgttttgctaatttgtttttaaatttcatattga
tcctcacagaatgatcctgagttctctgtcttcaagatcagatatgctga
ataccacataacctattctatgggtaaggctttccaatgaactccctata
tgatttgttgacattttcttgttttcatttcagcttgtctgttttcttga
ccagcatttctttttatctagttctcatttcaaatacttaatagactacc
tgtttcactcaactgactgttcatgtcattttggggtaaatttattttct
ctataatttcattcaatatgtttacaattgttctttcgaggtgtgtgtgt
gtgtgtgtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25663986_25664909
seq2: B6Ng01-214N06.b_46_971

seq1  GAATTCACTTTATTGACTGGTGTTTGGCAACTCGAGCTTATTTATTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTATTGACTGGTGTTTGGCAACTCGAGCTTATTTATTTCTT  50

seq1  CCAAAGCTTCTTTTAAACTTGTGTTTTGATGGGCATGGCTTTTAAGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTTCTTTTAAACTTGTGTTTTGATGGGCATGGCTTTTAAGTTTG  100

seq1  TTTCTTCATAGCCAATGTTGAAATCCTAACTTCCAAGATAATACTATTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCATAGCCAATGTTGAAATCCTAACTTCCAAGATAATACTATTAT  150

seq1  AAAACATAGACTTTGGGCAAAAACGAGGGCCTCCACCAATGTAAGTGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACATAGACTTTGGGCAAAAACGAGGGCCTCCACCAATGTAAGTGATG  200

seq1  TCTTTATAAGAGGCCACAGAAAAGGTAGGCAGCTTCCTCTTCTTGTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTATAAGAGGCCACAGAAAAGGTAGGCAGCTTCCTCTTCTTGTTCTT  250

seq1  CTTTTTTCCCTAAAACTGTATCATTTTTATTTTTTATCTAGTTGTTTTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTTTCCCTAAAACTGTATCATTTTTATTTTTTATCTAGTTGTTTTTT  300

seq1  TTATTAGATATTTTCTTCATGTACATTTCAAATGCTATCCCAAAAGTCCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTAGATATTTTCTTCATGTACATTTCAAATGCTATCCCAAAAGTCCC  350

seq1  CTATACCCTCCCCCGCCCTGCTCCCCTACCCACTCACTCCTACTTCTTGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATACCCTCCCCCGCCCTGCTCCCCTACCCACTCACTCCTACTTCTTGG  400

seq1  CCCTGGCGTTCCCCTATACTGGGACATATAAAGTCCGCAATACCAAGGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCGTTCCCCTATACTGGGACATATAAAGTCCGCAATACCAAGGGG  450

seq1  CCTCTCTTCCCAATGATGGCCGACCAGGCCATCTTCTGATAAATATGCAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTCTTCCCAATGATGGCCGACCAGGCCATCTTCTGATAAATATGCAG  500

seq1  CTAGAGACACGAGCTCTGGGGTTAATTCTGGGATTAATTCATACTGTTGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAGACACGAGCTCTGGGGTTAATTCTGGGATTAATTCATACTGTTGT  550

seq1  TCCACCTATAGGGTTGCAGACCCCGTCGGCTCCTTTGGTACTTTCTCTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACCTATAGGGTTGCAGACCCCGTCGGCTCCTTTGGTACTTTCTCTAG  600

seq1  CTCCTCCAATGGAGGGCCCTGTGTTCCATCCTATAGATGACTGTGAGCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCTCCAATGGAGGGCCCTGTGTTCCATCCTATAGATGACTGTGAGCCA  650

seq1  GCTTCTTATGAGGACCAGACATCCTTTGCGCTTTCCAAATTATGGTCCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTCTTATGAGGACCAGACATCCTTTGCGCTTTCCAAATTATGGTCCTT  700

seq1  TCAGTATGGAATATCATTGGGGCTTTTCATATTGTCAGTACTACATTTAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTATGGAATATCATTGGGGCTTTTCATATTGTCAGTACTACATTTAT  750

seq1  TATACTGTGCACATTACATTTAAATAAAACACTGAGCAAGTGTGCTCTGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACTGTGCACATTACATTTAAATAAAACACTGAGCAAGTGTGCTCTGT  800

seq1  AGAGTCTAACTGTCCTCTTCAACAACGAATTGAGGAAAATGA-TTCATAT  849
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  AGAGTCTAACTGTCCTCTTCAACAACGAATTGAGGAAAATGATTTCATAT  850

seq1  ATTAACTACTTGCGTAGAAAGCA-TATAGAAAAACAGAAAACTGAGCAGC  898
      ||||||||||||||||||||||| ||||||||||||||||||||||||||
seq2  ATTAACTACTTGCGTAGAAAGCATTATAGAAAAACAGAAAACTGAGCAGC  900

seq1  GTAATATTTTATCAATAACAGTATCC  924
      ||||||||||||||||||||||||||
seq2  GTAATATTTTATCAATAACAGTATCC  926


seq1: chr4_25773597_25774019
seq2: B6Ng01-214N06.g_66_488 (reverse)

seq1  CACACACACACACACACACACACACACCTCGAAAGAACAATTGTAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACACACACACCTCGAAAGAACAATTGTAAACAT  50

seq1  ATTGAATGAAATTATAGAGAAAATAAATTTACCCCAAAATGACATGAACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGAATGAAATTATAGAGAAAATAAATTTACCCCAAAATGACATGAACA  100

seq1  GTCAGTTGAGTGAAACAGGTAGTCTATTAAGTATTTGAAATGAGAACTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCAGTTGAGTGAAACAGGTAGTCTATTAAGTATTTGAAATGAGAACTAG  150

seq1  ATAAAAAGAAATGCTGGTCAAGAAAACAGACAAGCTGAAATGAAAACAAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAAAAGAAATGCTGGTCAAGAAAACAGACAAGCTGAAATGAAAACAAG  200

seq1  AAAATGTCAACAAATCATATAGGGAGTTCATTGGAAAGCCTTACCCATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGTCAACAAATCATATAGGGAGTTCATTGGAAAGCCTTACCCATAG  250

seq1  AATAGGTTATGTGGTATTCAGCATATCTGATCTTGAAGACAGAGAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGGTTATGTGGTATTCAGCATATCTGATCTTGAAGACAGAGAACTCA  300

seq1  GGATCATTCTGTGAGGATCAATATGAAATTTAAAAACAAATTAGCAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCATTCTGTGAGGATCAATATGAAATTTAAAAACAAATTAGCAAAAC  350

seq1  ATGAACAAGTTTGGGGGCAGCATGTAAAATCAAATTACCAACTATGGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAACAAGTTTGGGGGCAGCATGTAAAATCAAATTACCAACTATGGGCA  400

seq1  TATGAAAAGAGGAATAAGAATTC  423
      |||||||||||||||||||||||
seq2  TATGAAAAGAGGAATAAGAATTC  423


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