BAC Information

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BAC

Clone NameB6Ng01-215F06
Chromosome4 (Build37)
Map Location 144,393,176 - 144,393,824
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995, OTTMUSG00000010537, EG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242
Downstream geneLOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8, LOC666282, 9230115A19Rik, LOC195576, LOC622846, LOC666314, LOC545701, OTTMUSG00000010965, LOC666334, LOC545703, LOC384081, LOC100041379, LOC666349, LOC666351, LOC545704, 1700029I01Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215F06.bB6Ng01-215F06.g
ACCGA032328GA032329
length1,206944
definitionB6Ng01-215F06.b B6Ng01-215F06.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctttgttcagttctgagccccattttttaatggggttgtttgatt
ttctgaagtccaccttcttgagttctttatatatgttggatattagtccc
ctatctgatttaggataggtaaagatcctttcccaatctgttggtggtct
ctttgtcttattgacggtgtcttttgccttgcagaaactttggagtttca
ttaggtcccatttgtcaattctcgatcttacagcacaagccattgctgtt
ctgttcaggaatttttcccctgtgcccatatcttcaaggcttttccccac
tttctcctctataagtttcagtgtctctggttttatgtgaagttctttga
tccatttagatttgaccttagtacaaggagataagtatggatcgattcgc
attcttctacatgataacaaccagttgtgccagcaccatttgttgaaaat
gctgtctttcttccactggatggttttagctcccttgtcgaagatcaagt
gaccataggtgtgtgggttcatttctgggtcttcaattctattccattgg
tctacttgtctgtctctataccagtaccatgcagtttttaccacaattgc
tctgtagtaaagctttaggtccggcatggtgattccaccagaggttcttt
tatccttgagaagagattttgctatcctaggttttttgttattccagatg
aatttgcaaattgctccttctaattcattgaagaattgagttggaatttt
gatggggattgcattgaatctgtagattgcttttggcaagatagccattt
ttacaatattgatcctgcaatccatgagcatgggagatctttccatcttc
tgagatcttctttaatttctttcttcagagacttgaagtttttatcatac
agatctttcacttccttagttagagtcacgccgagatatttatatatttg
tgactattgagaagggtgttgtttcctaatttctttctcagcctgttatt
ctttgtgtagaggaagggccattggactgcttgagttaatttatattcca
gctactcacaagctgtttattcagggttaggagttccctggtgaatttta
agggtcactaatattatctatcatatcatctgctaatgtgatatctgact
cctcgtacaattgaatccctgaatctccttactgcctaattggctctgag
cctcat
gaattctaataggtctgcctttatatgttacttggccttttccccttgta
gcttttaatgttctttctttgttttgtacatttagtgttttgattgatat
gtggcaggaagatgttctttttttggtccaatcatttggtgttctataag
cttcttgtacatttataggcacctcttactttaggttaggggaattttct
tctataattttgttgaaaatgttttctgggcctttgagctggaaatcttc
ttcttcttttagtcctattatttttatgtttggtcttttcatagtgtccc
agacttcctaaatgttttgcatcaaaaacttttagatttaacattttctt
tgatcgacatatcaatttcttctattgtatcttatatgcttgagattctc
tcttccatctcttgaattctgtgggtgatacttgcatctgaagtttctgt
tgtcttacccaggttttccatatccaagatttcctcagcgtgtgttttct
tcattgcttctatttccattttcaggtcaaatcttgaacagttttattca
ttcctttacctatttggtcatatttcctgtatttccttaagggatttgtt
catttcctctctaaaagcctcgattattcttcataagattggatttaagg
tcattttcttagaccttaaagattgtgctttagctctgttagggtctcca
ggacttgctgttgtaagatatctgggctgtggtggtgccaagttgccctg
agtattgtttattgggttcttaccctgtcctttaactatctggttgtccc
tagtgctggctgacctccagaatacaggcggagttgtggacttgaaaatg
gaacccacgggaccaggtgcagtttaccactgttgggtgtgtctaaagac
ttaacaggcaagtgcttggtggggggcgggggaggggggattct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_144393176_144393824
seq2: B6Ng01-215F06.g_363_1012

seq1  TGTCCCAGACTTCCTAAATGTTTTGCATCAAAAACTTTTAGATTTAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCCCAGACTTCCTAAATGTTTTGCATCAAAAACTTTTAGATTTAACAT  50

seq1  TTTCTTTGATCGACATATCAATTTCTTCTATTGTATCTTATATGCTTGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGATCGACATATCAATTTCTTCTATTGTATCTTATATGCTTGAG  100

seq1  ATTCTCTCTTCCATCTCTTGAATTCTGTGGGTGATACTTGCATCTGAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTCTCTTCCATCTCTTGAATTCTGTGGGTGATACTTGCATCTGAAGT  150

seq1  TTCTGTTGTCTTACCCAGGTTTTCCATATCCAAGATTTCCTCAGCGTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTGTCTTACCCAGGTTTTCCATATCCAAGATTTCCTCAGCGTGTG  200

seq1  TTTTCTTCATTGCTTCTATTTCCATTTTCAGGTCAAATCTTGAACAGTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCATTGCTTCTATTTCCATTTTCAGGTCAAATCTTGAACAGTTT  250

seq1  TATTCATTCCTTTACCTATTTGGTCATATTTCCTGTATTTCCTTAAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCATTCCTTTACCTATTTGGTCATATTTCCTGTATTTCCTTAAGGGA  300

seq1  TTTGTTCATTTCCTCTCTAAAAGCCTCGATTATTCTTCATAAGATTGGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTCATTTCCTCTCTAAAAGCCTCGATTATTCTTCATAAGATTGGAT  350

seq1  TTAAGGTCATTTTCTTAGACCTTAAAGATTGTGCTTTAGCTCTGTTAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGGTCATTTTCTTAGACCTTAAAGATTGTGCTTTAGCTCTGTTAGGG  400

seq1  TCTCCAGGACTTGCTGTTGTAAGATATCTGGGCTGTGGTGGTGCCAAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCAGGACTTGCTGTTGTAAGATATCTGGGCTGTGGTGGTGCCAAGTT  450

seq1  GCCCTGAGTATTGTTTATTGGGTTCTTACCCTGTCCTTTAACTATCTGGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTGAGTATTGTTTATTGGGTTCTTACCCTGTCCTTTAACTATCTGGT  500

seq1  TGTCCCTAGTGCTGGCTGACCTCCAAGAATACAGGCGGAGTTGTGGACTT  550
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  TGTCCCTAGTGCTGGCTGACCTCC-AGAATACAGGCGGAGTTGTGGACTT  549

seq1  GAAAATGGAACCCACGGGACCAGGTGCAGTTTACCACTGTTGGGTGTGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATGGAACCCACGGGACCAGGTGCAGTTTACCACTGTTGGGTGTGTC  599

seq1  TTAAGACTTAACAGGCAAGTGCTTGGGTGGGGGCGGGG--AGGGAGATTC  648
      | ||||||||||||||||||||||||  ||||||||||   ||| |||||
seq2  TAAAGACTTAACAGGCAAGTGCTTGGTGGGGGGCGGGGGAGGGGGGATTC  649

seq1  T  649
      |
seq2  T  650