BAC Information

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BAC

Clone NameB6Ng01-215K01
Chromosome4 (Build37)1 (Build37)
Map Location 25,740,783 - 25,741,968139,802,894 - 139,802,973
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneKlhl32, 1110007M04Rik, C230012O17Rik, Gpr63, Fhl5, 1810074P20Rik, Prdx6-rs2, LOC665019, LOC625732, Fut9, LOC100040780
Downstream geneHn1-ps1, Manea, Bhmt-ps1, LOC665079, Gng2-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-215K01.bB6Ng01-215K01.g
ACCGA032535GA032536
length1,188980
definitionB6Ng01-215K01.b B6Ng01-215K01.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(25,740,783 - 25,741,968)(139,802,894 - 139,802,973)
sequence
gaattctcttgaggcatgagagtcaaccttaaattctgggcttcatgtgt
ataaacattcccctgccaccacacacctatccctccacagatacacaaat
ttgcctaagatagtatttattgagtctaaacattttaacatttatacacc
cagtgtcagaattttagtagtttttttctttcattcttaatatttactaa
tgttttaccatatgattgtgcaatccagattctttatttagattaatgtc
ctggcttaaattttcatataaaatatttttatttttataatgagctcaca
tcattttcagtttagatctacctttctaaaatagctgtttctgttatgca
aactgattcattcttcatgctctagacaaatttgataagttgcacacact
tagtttccaacatttggttgtagcaatttcaccttgactgattgcgttgt
gtcacatgcagcttttgtatacttcatttcctctttaaagaatttttctg
ctacatttactccgttttcttccccatagttgagatctgcttttacattt
ttccttcctgctattgtctgtctcattgtctcaacctctttgtttcttcc
caggcatattcatttaaatatattttgctctgcaaagtatgaatgacaca
caaatgcaccttcctttgctccctgtgttttcacttgctattctatgttc
caaagaagtaccattatttgcgaatcttaatttttggtatttgaactaaa
gacaatctgcaattttacaataagctagagctggatattttgtctcttat
acttcattaatttaatctctattgtagtgtctttggcaaatagcttttac
gtgatcatttgttaagtgctgtggataaaatgcatgactctattactgag
ttattattatgcctccaagtttttattcccccagtgtagcagagtttctt
tgacagaaaacataaaatcagctttcagccatttcactttcaagctatct
aaaataataagcgttgttaaaaaaatgcttaactttgaacctgagtgaac
aaagccaatgaagatctaattcctattaaagaggagtcaccttaattata
gaatacctcacatgttatattttgttgggttaaggagagagaaaccttct
ctgtttttattgcaaatgagattctttcataaatattc

gaattctcaactgaggaaatttgaatggctgagaagcccctaaagaaatg
tttttgttattttgtttttttgtttttcaaattttttattagatattatg
tttaacaaccttagtcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacatcagtcaggatggctaagatcaaaaactcaggtgacagc
agatactggcaaggatgtggagaaagaggaacacttcttcattgctggta
ggattgcaagctggtacaaccacttgggaaataagtctggttattactca
gaaaactggacatagtgaggacctagctataccacttctggggatttaca
cagaagatgttccaacctgtaataaggacacatgtttcactctgttcata
acagccatatttataataaacataagctagaaaccacccagatgtccctc
aacagaggaatggatacagaaagtatggtacatttacacaatagagtact
acactattataaacaatgactttacagaatttgcaggcaaatgaatggaa
ctagaaaatatcatcctgagtaaggtaacccattcacaaaggaacacaca
tggtatgatttcactgataagtggatattaggcaaagagtgtaaagtacc
catgatacaactcacagaccacctgaagctcaagaggaaggaagaccaaa
gagtggatgctttcttctgtcctccttagaaggaggaacaatataatcaa
gtcttacacgcgttcacgaccggccaggaaagacgcagcaaaccagaatc
ttctgcggcaaaactttatttgcttacatcttcaggagcaagagtgcaag
ccccccattgcttacatctttagggagccagagcgccagagcgccagagc
gccagagcgcagagcaagagctctattgtttacatctttaggagcaagga
gagtaagccccaagccaaagcgaaagcgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_25740783_25741968
seq2: B6Ng01-215K01.b_40_1227

seq1  GAATTCTCTTGAGGCATGAGAGTCAACCTTAAATTCTGGGCTTCATGTGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTTGAGGCATGAGAGTCAACCTTAAATTCTGGGCTTCATGTGT  50

seq1  ATAAACATTCCCCTGCCACCACACACCTATCCCTCCACAGATACACAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATTCCCCTGCCACCACACACCTATCCCTCCACAGATACACAAAT  100

seq1  TTGCCTAAGATAGTATTTATTGAGTCTAAACATTTTAACATTTATACACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCTAAGATAGTATTTATTGAGTCTAAACATTTTAACATTTATACACC  150

seq1  CAGTGTCAGAATTTTAGTAGTTTTTTTCTTTCATTCTTAATATTTACTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGTCAGAATTTTAGTAGTTTTTTTCTTTCATTCTTAATATTTACTAA  200

seq1  TGTTTTACCATATGATTGTGCAATCCAGATTCTTTATTTAGATTAATGTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTACCATATGATTGTGCAATCCAGATTCTTTATTTAGATTAATGTC  250

seq1  CTGGCTTAAATTTTCATATAAAATATTTTTATTTTTATAATGAGCTCACA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTTAAATTTTCATATAAAATATTTTTATTTTTATAATGAGCTCACA  300

seq1  TCATTTTCAGTTTAGATCTACCTTTCTAAAATAGCTGTTTCTGTTATGCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTCAGTTTAGATCTACCTTTCTAAAATAGCTGTTTCTGTTATGCA  350

seq1  AACTGATTCATTCTTCATGCTCTAGACAAATTTGATAAGTTGCACACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGATTCATTCTTCATGCTCTAGACAAATTTGATAAGTTGCACACACT  400

seq1  TAGTTTCCAACATTTGGTTGTAGCAATTTCACCTTGACTGATTGCGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTTTCCAACATTTGGTTGTAGCAATTTCACCTTGACTGATTGCGTTGT  450

seq1  GTCACATGCAGCTTTTGTATACTTCATTTCCTCTTTAAAGAATTTTTCTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATGCAGCTTTTGTATACTTCATTTCCTCTTTAAAGAATTTTTCTG  500

seq1  CTACATTTACTCCGTTTTCTTCCCCATAGTTGAGATCTGCTTTTACATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTACTCCGTTTTCTTCCCCATAGTTGAGATCTGCTTTTACATTT  550

seq1  TTCCTTCCTGCTATTGTCTGTCTCATTGTCTCAACCTCTTTGTTTCTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTCCTGCTATTGTCTGTCTCATTGTCTCAACCTCTTTGTTTCTTCC  600

seq1  CAGGCATATTCATTTAAATATATTTTGCTCTGCAAAGTATGAATGACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCATATTCATTTAAATATATTTTGCTCTGCAAAGTATGAATGACACA  650

seq1  CAAATGCACCTTCCTTTGCTCCCTGTGTTTTCACTTGCTATTCTATGTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATGCACCTTCCTTTGCTCCCTGTGTTTTCACTTGCTATTCTATGTTC  700

seq1  CAAAGAAGTACCATTATTTGCGAATCTTAATTTTTGGTATTTGAACTAAA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGTACCATTATTTGCGAATCTTAATTTTTGGTATTTGAACTAAA  750

seq1  GACAATCTGCAATTTTACAATAAGCTAGAGCTGGATATTTTGTCTCTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAATCTGCAATTTTACAATAAGCTAGAGCTGGATATTTTGTCTCTTAT  800

seq1  ACTTCATTAATTTAATCTCTATTGTAGTGTCTTTGGCAAATAGCTTTTAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCATTAATTTAATCTCTATTGTAGTGTCTTTGGCAAATAGCTTTTAC  850

seq1  GTGATCATTTGTTAAGTGCTGTGGATAAAATGCATGACTCTATTACTGAG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATCATTTGTTAAGTGCTGTGGATAAAATGCATGACTCTATTACTGAG  900

seq1  TTATTATTATGCCTCCAAG-TTTTATTCCCCCAGTGTAGCAGGAGTTTCT  949
      ||||||||||||||||||| ||||||||||||||||||||| ||||||||
seq2  TTATTATTATGCCTCCAAGTTTTTATTCCCCCAGTGTAGCA-GAGTTTCT  949

seq1  TTGACAGAAAACATAAAATCAGC-TTCAGCCA-TTCACTTTCAAGCTATC  997
      ||||||||||||||||||||||| |||||||| |||||||||||||||||
seq2  TTGACAGAAAACATAAAATCAGCTTTCAGCCATTTCACTTTCAAGCTATC  999

seq1  TAAAATAATAAGCGTTGTTAAAAAAATGCTTAACTTTGAACCTGAGTGAC  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  TAAAATAATAAGCGTTGTTAAAAAAATGCTTAACTTTGAACCTGAGTGAA  1049

seq1  AAAAGCCAATGAAGATCTAATTCCTATTAAAGAGGAGTCACCT--AATAT  1095
       ||||||||||||||||||||||||||||||||||||||||||  | |||
seq2  CAAAGCCAATGAAGATCTAATTCCTATTAAAGAGGAGTCACCTTAATTAT  1099

seq1  AG-ATA-CTCACAATGTTATA-TTTGTTGAG-TAAAGAGAGAGAAACCTT  1141
      || ||| ||||| |||||||| ||||||| | ||| |||||||||||| |
seq2  AGAATACCTCAC-ATGTTATATTTTGTTGGGTTAAGGAGAGAGAAACC-T  1147

seq1  TCTCCTGTTTTATTGAAAAT-AGATTTCTTTTCATAAAATATATTC  1186
      ||||   |||||||| |||| |||||   ||||||||   ||||||
seq2  TCTCTGTTTTTATTGCAAATGAGATT--CTTTCATAA---ATATTC  1188


seq1: chr1_139802894_139802973
seq2: B6Ng01-215K01.g_125_169

seq1  TTTTGTTTTTTTGTTTTTGTTTTTTCAAAATAAAGTTACATTTTTTTATA  50
      |||||||||||||       ||||||||                      
seq2  TTTTGTTTTTTTG-------TTTTTCAA----------------------  21

seq1  TTTCTTATTTTTTATTAGATATTTTGTTTA  80
            ||||||||||||||||| ||||||
seq2  ------ATTTTTTATTAGATATTATGTTTA  45


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