BAC Information

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BAC

Clone NameB6Ng01-216A08
Chromosome4 (Build37)
Map Location 134,013,642 - 134,156,336
singlet/doubletdoublet
Overlap geneStmn1, Paqr7, 2610002D18Rik, 2410166I05Rik, Sepn1, Man1c1
Upstream gene4732473B16Rik, 2300002D11Rik, 1810019J16Rik, Nudc, Nr0b2, Gpatch3, Atpbd1b, Sfn, Zdhhc18, LOC545683, Pigv, Arid1a, Rps6ka1, 4930429E23Rik, LOC100042151, Hmgn2, Dhdds, Lin28, Aim1l, Cd52, Ubxd5, Sh3bgrl3, Ccdc21, EG665186, Catsper4, Cnksr1, Zfp593, Grrp1, Pdik1l, Trim63, Slc30a2, Extl1, LOC434166, Pafah2
Downstream geneLdlrap1, Tmem57, Rhd, Tmem50a, D4Wsu53e, Syf2, Runx3, Clic4, LOC676072, Srrm1, A330049M08Rik, LOC665287, Dscr1l2, Npal3, 4930555I21Rik, Grhl3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216A08.bB6Ng01-216A08.g
ACCGA032821GA032822
length1,1571,002
definitionB6Ng01-216A08.b B6Ng01-216A08.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(134,013,642 - 134,014,799)(134,155,339 - 134,156,336)
sequence
gaattcaaagaagctggtgagtctcttcagcctatgttcagacccacagg
aacccattgaagaggtagactggggcttggggatatagttggagagcacc
tgaccagcaggcccaagccctggtttctatcccttgcaccacagaaacca
ggtgtatcagcacttgcttgcaatcctagcacttgggaggtagagacagg
aagatcagaaaagcaaggcgatcctcaggcacggaatgaatcaaggctag
actagttacaggagaccctgtcgcagaggtaaacaaacagaaatacaaag
agagaagcagactgatcaaaaacaaacaaacaaaagttgctgagcgtggg
ggcacgcgcttaatctggcactgggcacacagggtaggaagatcagaaga
cgttcaaggccagccttggctacatgagaccatgtctcaaataagcaaat
aaattcaaaagaaattcgatgatacaggatgatgtaaagtcatcctccca
ggcccatgaaggaggagcagtcaaatcatccgcagacagtgtcagaagcc
cagcagaaacaagagggtccatctcccatgttattactcctgtatcttct
ctctccctctctccactcggagaccaggtctcccttgtacctccagttgg
ccatgaattcactatgtacatagcccaggctttcccttgatttgcagcaa
tccaagcctggggcttcccgaatgtggaggttacaggcacagccaccacc
agttcatactgctcacctcttgtttgtattttgctcattcggagaagact
ggctggaggaagcggtggaaagcaatcacccagctacttcgttacagaaa
tgggccccagttgaggcgacaagactctccatgcaaggtggtgtcctgag
ttagatcttggaacagaaaaaaaaagagagagagagaccccaacaggaag
atggaggagccagctcaagccagcccgttcagttacagcgctgcgctagg
cagatgttcctagttggaatatgtgtcatttattattcggggtgaccctg
aatatcaacggttgtgtacagagaaggttcatgagctctcacagatgacg
agattggggcagtcgcacttggaattcgcataccaatgatgatcaggaca
gcaggat
gaattctcagaaggcacagcatggatggctcttctttgcaccttgtgcgc
aggcgctcagctgcgtaggttggaggcggaggcttttcattcatgtgtct
ggaatccatgccagttgttggccagacctctggtgggactgtcagtcggg
ataaatgtacatggagtcctagtggctgtcttgggctccccgacaatatg
gcatctgtccctcacagaggcaggagagctgccaatttcttaaggctggc
ctagaaaccaacatatcctcacattctttattctgtgggtccgagtcatt
acctgtcctgcccaggtgttggggtaaagccaagcaaggagcgtccacac
cccaggaagcctcactgtcacgggcaagcactgcctttggtccccatctg
taaaaattccagtctgccacacacagccaccctgctctctgtggcagccg
agaaaagatgtccgtgttgtttcactgcagatcaagagaagtctctgcgg
attgtatcattaaattaaacacagccattagtgcgtggctccggggagac
gcagtaataggcgaggccttgggtcattttttttccttctaaatgttctt
ccgggagctggagttgcccagcctgacccatttctctctgttaatataac
atcacataaaagacatcattattatacggcagagctggtggggacacaga
ccaggcaagtagctctgtgaaggtggccctggccctgagaggaggtgctg
gggccagaagttctcactcctctcaacaggcagctctgtgtgaggtgcgg
tgaggcccgtggaggccagaggatgaatggtcttgagtgttgatcctctt
tggtgttgtccagctttgggttttgagacctagttctgtccttggcctgg
gggttcattgattagttagactgactctgcactgagtcccggcagcctcc
tgtcttgtcattattccacaagaatggctgtggtgtgggggtagggaggg
gt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_134013642_134014799
seq2: B6Ng01-216A08.b_45_1201

seq1  GAATTCAAAGAAGCTGGTGAGTCTCTTCAGCCTATGTTCAGACCCACAGG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAGCTGGTGAGTCTCTTCAGCCTATGTTCAGACCCACAGG  50

seq1  AACCCATTGAAGAGGTAGACTGGGGCTTGGGGATATAGTTGGAGAGCACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCATTGAAGAGGTAGACTGGGGCTTGGGGATATAGTTGGAGAGCACC  100

seq1  TGACCAGCAGGCCCAAGCCCTGGTTTCTATCCCTTGCACCACAGAAACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCAGCAGGCCCAAGCCCTGGTTTCTATCCCTTGCACCACAGAAACCA  150

seq1  GGTGTATCAGCACTTGCTTGCAATCCTAGCACTTGGGAGGTAGAGACAGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTATCAGCACTTGCTTGCAATCCTAGCACTTGGGAGGTAGAGACAGG  200

seq1  AAGATCAGAAAAGCAAGGCGATCCTCAGGCACGGAATGAATCAAGGCTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCAGAAAAGCAAGGCGATCCTCAGGCACGGAATGAATCAAGGCTAG  250

seq1  ACTAGTTACAGGAGACCCTGTCGCAGAGGTAAACAAACAGAAATACAAAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGTTACAGGAGACCCTGTCGCAGAGGTAAACAAACAGAAATACAAAG  300

seq1  AGAGAAGCAGACTGATCAAAAACAAACAAACAAAAGTTGCTGAGCGTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGCAGACTGATCAAAAACAAACAAACAAAAGTTGCTGAGCGTGGG  350

seq1  GGCACGCGCTTAATCTGGCACTGGGCACACAGGGTAGGAAGATCAGAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACGCGCTTAATCTGGCACTGGGCACACAGGGTAGGAAGATCAGAAGA  400

seq1  CGTTCAAGGCCAGCCTTGGCTACATGAGACCATGTCTCAAATAAGCAAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTCAAGGCCAGCCTTGGCTACATGAGACCATGTCTCAAATAAGCAAAT  450

seq1  AAATTCAAAAGAAATTCGATGATACAGGATGATGTAAAGTCATCCTCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTCAAAAGAAATTCGATGATACAGGATGATGTAAAGTCATCCTCCCA  500

seq1  GGCCCATGAAGGAGGAGCAGTCAAATCATCCGCAGACAGTGTCAGAAGCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCATGAAGGAGGAGCAGTCAAATCATCCGCAGACAGTGTCAGAAGCC  550

seq1  CAGCAGAAACAAGAGGGTCCATCTCCCATGTTATTACTCCTGTATCTTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCAGAAACAAGAGGGTCCATCTCCCATGTTATTACTCCTGTATCTTCT  600

seq1  CTCTCCCTCTCTCCACTCGGAGACCAGGTCTCCCTTGTACCTCCAGTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCTCTCTCCACTCGGAGACCAGGTCTCCCTTGTACCTCCAGTTGG  650

seq1  CCATGAATTCACTATGTACATAGCCCAGGCTTTCCCTTGATTTGCAGCAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGAATTCACTATGTACATAGCCCAGGCTTTCCCTTGATTTGCAGCAA  700

seq1  TCCAAGCCTGGGGCTTCCCGAATGTGGAGGTTACAGGCACAGCCACCACC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGCCTGGGGCTTCCCGAATGTGGAGGTTACAGGCACAGCCACCACC  750

seq1  AGTTCATACTGCTCACCTCTTGTTTGTATTTTGCTCATTCGGAGAAGACT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTCATACTGCTCACCTCTTGTTTGTATTTTGCTCATTCGGAGAAGACT  800

seq1  GGCTGGAGGAAGCGGTGGAAAGCAATCACCCAGCTACTTCGTTACAGAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTGGAGGAAGCGGTGGAAAGCAATCACCCAGCTACTTCGTTACAGAAA  850

seq1  T-GGCCCCAGTTGAGGCGACAAGACTCTCCATGCAAGGTGGTGTCCTGAG  899
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCCCAGTTGAGGCGACAAGACTCTCCATGCAAGGTGGTGTCCTGAG  900

seq1  TTAGATCTTGGAACAGAAAAAAAAAGAGAGAGAGAGACCCCAACAGGAAG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATCTTGGAACAGAAAAAAAAAGAGAGAGAGAGACCCCAACAGGAAG  950

seq1  ATGGAGGAGCCAGCTCAAGCCAG-CCGTTCAGTTAACAGCGCTGCGCTAA  998
      ||||||||||||||||||||||| |||||||||| ||||||||||||| |
seq2  ATGGAGGAGCCAGCTCAAGCCAGCCCGTTCAGTT-ACAGCGCTGCGCT-A  998

seq1  GGCAGATG-TCCTAGTTTGGATATGTGTCATTTATTATTCTGTGTGACCC  1047
      |||||||| |||||||| | |||||||||||||||||||| | |||||||
seq2  GGCAGATGTTCCTAGTTGGAATATGTGTCATTTATTATTCGGGGTGACCC  1048

seq1  TG-ATATCAACCGTTGTTGTACAGAAGAAGTTTCATGAGCTCTTCACAGA  1096
      || |||||||| |||| ||||||| ||||| ||||||||||| |||||||
seq2  TGAATATCAACGGTTG-TGTACAG-AGAAGGTTCATGAGCTC-TCACAGA  1095

seq1  TGACGAGA-TGGGGCAGTCGCACCTGAGATTCGCACAACCATGATGAGCA  1145
      |||||||| |||||||||||||| ||  ||||||| | | ||||||| ||
seq2  TGACGAGATTGGGGCAGTCGCACTTGGAATTCGCATACCAATGATGATCA  1145

seq1  GGACCAGCAGGAT  1158
      ||| |||||||||
seq2  GGA-CAGCAGGAT  1157

seq1: chr4_134155339_134156336
seq2: B6Ng01-216A08.g_66_1067 (reverse)

seq1  ACACCTCCCTA-CCCCAC-CCACAGACATTCTTGTGGAATAATGAC-AGA  47
      || |||||||| |||||| |||||| |||||||||||||||||||| |||
seq2  ACCCCTCCCTACCCCCACACCACAGCCATTCTTGTGGAATAATGACAAGA  50

seq1  CAGGAGGCTGCCCGGGACTCAGTGCAGAGTCAGTCTAACCTAATCAATGA  97
      |||||||||| ||||||||||||||||||||||||||| |||||||||||
seq2  CAGGAGGCTG-CCGGGACTCAGTGCAGAGTCAGTCTAA-CTAATCAATGA  98

seq1  A-CCCCAGGCCAAGGACAG-ACTAGGTCTCAAAACCC-AAGCTGGACAAC  144
      | ||||||||||||||||| ||||||||||||||||| ||||||||||||
seq2  ACCCCCAGGCCAAGGACAGAACTAGGTCTCAAAACCCAAAGCTGGACAAC  148

seq1  ACCAAAGAGGATCAACACTCAAGACCATTCATCCTCTGGCCTCCACGGGC  194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAAGAGGATCAACACTCAAGACCATTCATCCTCTGGCCTCCACGGGC  198

seq1  CTCACCGCACCTCACACAGAGCTGCCTGTTGAGAGGAGTGAGAACTTCTG  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACCGCACCTCACACAGAGCTGCCTGTTGAGAGGAGTGAGAACTTCTG  248

seq1  GCCCCAGCACCTCCTCTCAGGGCCAGGGCCACCTTCACAGAGCTACTTGC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCAGCACCTCCTCTCAGGGCCAGGGCCACCTTCACAGAGCTACTTGC  298

seq1  CTGGTCTGTGTCCCCACCAGCTCTGCCGTATAATAATGATGTCTTTTATG  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTCTGTGTCCCCACCAGCTCTGCCGTATAATAATGATGTCTTTTATG  348

seq1  TGATGTTATATTAACAGAGAGAAATGGGTCAGGCTGGGCAACTCCAGCTC  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTTATATTAACAGAGAGAAATGGGTCAGGCTGGGCAACTCCAGCTC  398

seq1  CCGGAAGAACATTTAGAAGGAAAAAAAATGACCCAAGGCCTCGCCTATTA  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGGAAGAACATTTAGAAGGAAAAAAAATGACCCAAGGCCTCGCCTATTA  448

seq1  CTGCGTCTCCCCGGAGCCACGCACTAATGGCTGTGTTTAATTTAATGATA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCGTCTCCCCGGAGCCACGCACTAATGGCTGTGTTTAATTTAATGATA  498

seq1  CAATCCGCAGAGACTTCTCTTGATCTGCAGTGAAACAACACGGACATCTT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATCCGCAGAGACTTCTCTTGATCTGCAGTGAAACAACACGGACATCTT  548

seq1  TTCTCGGCTGCCACAGAGAGCAGGGTGGCTGTGTGTGGCAGACTGGAATT  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGGCTGCCACAGAGAGCAGGGTGGCTGTGTGTGGCAGACTGGAATT  598

seq1  TTTACAGATGGGGACCAAAGGCAGTGCTTGCCCGTGACAGTGAGGCTTCC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAGATGGGGACCAAAGGCAGTGCTTGCCCGTGACAGTGAGGCTTCC  648

seq1  TGGGGTGTGGACGCTCCTTGCTTGGCTTTACCCCAACACCTGGGCAGGAC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTGTGGACGCTCCTTGCTTGGCTTTACCCCAACACCTGGGCAGGAC  698

seq1  AGGTAATGACTCGGACCCACAGAATAAAGAATGTGAGGATATGTTGGTTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTAATGACTCGGACCCACAGAATAAAGAATGTGAGGATATGTTGGTTT  748

seq1  CTAGGCCAGCCTTAAGAAATTGGCAGCTCTCCTGCCTCTGTGAGGGACAG  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCCAGCCTTAAGAAATTGGCAGCTCTCCTGCCTCTGTGAGGGACAG  798

seq1  ATGCCATATTGTCGGGGAGCCCAAGACAGCCACTAGGACTCCATGTACAT  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCATATTGTCGGGGAGCCCAAGACAGCCACTAGGACTCCATGTACAT  848

seq1  TTATCCCGACTGACAGTCCCACCAGAGGTCTGGCCAACAACTGGCATGGA  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCCGACTGACAGTCCCACCAGAGGTCTGGCCAACAACTGGCATGGA  898

seq1  TTCCAGACACATGAATGAAAAGCCTCCGCCTCCAACCTACGCAGCTGAGC  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGACACATGAATGAAAAGCCTCCGCCTCCAACCTACGCAGCTGAGC  948

seq1  GCCTGCGCACAAGGTGCAAAGAAGAGCCATCCATGCTGTGCCTTCTGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCGCACAAGGTGCAAAGAAGAGCCATCCATGCTGTGCCTTCTGAGA  998

seq1  ATTC  998
      ||||
seq2  ATTC  1002