MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	B6Ng01-216C09
Chromosome	4 (Build37)
Map Location	127,301,948 - 127,302,976
singlet/doublet	singlet
Overlap gene	none
Upstream gene	LOC620877, Psmb2, Tcfap2e, Ncdn, AU040320, Sfpq, Zmym1, LOC665245, Zmym6, LOC100039968, LOC621588, Dlgap3, BC003266, Gja4, Gjb3, Gjb4, Gjb5, LOC667296
Downstream gene	LOC635169, 4930465A12Rik, Hmgb4, 4930546G22Rik, Zscan20, Tlr12
Link	Open Mouse BAC browser

Click to get alignment info.

name	LOC620877 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:620877
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 mRNAs, 847 ESTs, 1 Protein pseudo : _no_value

name	Psmb2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26445 MGI:1347045
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tcfap2e (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:332937 MGI:2679630
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ncdn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26562 MGI:1347351
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	AU040320 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100317 MGI:2140475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 3 mRNAs

name	Sfpq (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71514 MGI:1918764
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zmym1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:68310 MGI:1915560
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC665245 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:665245
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 81 ESTs, 2 Proteins pseudo : _no_value

name	Zmym6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:100177 MGI:106505
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100039968 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100039968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 54 ESTs, 1 Protein

name	LOC621588 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:621588
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 307 ESTs, 2 Proteins

name	Dlgap3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:242667 MGI:3039563
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	BC003266 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:80284 MGI:1933141
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gja4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14612 MGI:95715
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gjb3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14620 MGI:95721
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gjb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14621 MGI:95722
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gjb5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14622 MGI:95723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC667296 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667296
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	LOC635169 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:635169
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein

name	4930465A12Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:74989 MGI:1922239
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Hmgb4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69317 MGI:1916567
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4930546G22Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:75242 MGI:1922492
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA

name	Zscan20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:269585 MGI:2679268
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Tlr12 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:384059 MGI:3045221
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Psmb2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142376021 GeneID:26445 MGI:1347045
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : proteasome (prosome, macropain) subunit, beta type 2 transcript_id : NM_011970.3

name	Tcfap2e (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:120444919 GeneID:332937 MGI:2679630
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : transcription factor AP-2, epsilon transcript_id : NM_198960.2

name	Ncdn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31560512 GeneID:26562 MGI:1347351
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : neurochondrin transcript_id : NM_011986.2

name	AU040320 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78482608 GeneID:100317 MGI:2140475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AU040320 transcript_id : NM_001035525.1

name	AU040320 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78482610 GeneID:100317 MGI:2140475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AU040320 transcript_id : NM_001035526.1

name	AU040320 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:78482606 GeneID:100317 MGI:2140475
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AU040320 transcript_id : NM_133886.2

name	Sfpq (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:59709441 GeneID:71514 MGI:1918764
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) transcript_id : NM_023603.2

name	Zmym1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129862 GeneID:68310 MGI:1915560
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, MYM domain containing 1 transcript_id : NM_026670.4

name	Zmym6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142364229 GeneID:100177 MGI:106505
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, MYM-type 6 transcript_id : NM_177462.3

name	LOC100039968 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253118 GeneID:100039968
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 54 ESTs, 1 Protein product : similar to transmembrane protein 35 transcript_id : XM_001474551.1

name	LOC621588 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:94372518 GeneID:621588
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 307 ESTs, 2 Proteins product : similar to ribosomal protein S28 transcript_id : XM_885993.2

name	Dlgap3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142351843 GeneID:242667 MGI:3039563
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : discs, large (Drosophila) homolog-associated protein 3 transcript_id : NM_198618.3

name	BC003266 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:114145577 GeneID:80284 MGI:1933141
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cDNA sequence BC003266 transcript_id : NM_030252.2

name	Gja4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:34328122 GeneID:14612 MGI:95715
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gap junction membrane channel protein alpha 4 transcript_id : NM_008120.2

name	Gjb3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6680012 GeneID:14620 MGI:95721
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gap junction membrane channel protein beta 3 transcript_id : NM_008126.1

name	Gjb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:49355797 GeneID:14621 MGI:95722
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gap junction membrane channel protein beta 4 transcript_id : NM_008127.3

name	Gjb5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353936 GeneID:14622 MGI:95723
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : gap junction membrane channel protein beta 5 transcript_id : NM_010291.3

name	LOC635169 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149253103 GeneID:635169
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein product : hypothetical LOC635169 transcript_id : XM_989799.2

name	4930465A12Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94372497 GeneID:74989 MGI:1922239
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930465A12 gene transcript_id : XM_897643.2

name	Hmgb4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142367390 GeneID:69317 MGI:1916567
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : high-mobility group box 4 transcript_id : NM_027036.2

name	4930546G22Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149253120 GeneID:75242 MGI:1922492
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4930546G22 gene transcript_id : XM_001474811.1

name	Zscan20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:41054997 GeneID:269585 MGI:2679268
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and SCAN domains 20 transcript_id : NM_177758.3

name	Tlr12 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:45430000 GeneID:384059 MGI:3045221
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : toll-like receptor 12 transcript_id : NM_205823.1

name	Psmb2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31981327 CCDS:CCDS18657.1 GeneID:26445 MGI:1347045
definition	GO_component : GO:0005829 - cytosol [Evidence IEA]; GO:0005839 - proteasome core complex (sensu Eukaryota) [Evidence IEA]; GO:0043234 - protein complex [Evidence IEA] GO_function : GO:0004175 - endopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0004298 - threonine endopeptidase activity [Evidence IEA] GO_process : GO:0006511 - ubiquitin-dependent protein catabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : proteasome (prosome, macropain) subunit, beta type 2 protein_id : NP_036100.2

name	Tcfap2e (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:120444920 CCDS:CCDS18658.1 GeneID:332937 MGI:2679630
definition	GO_component : GO:0005634 - nucleus [Evidence IC] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0046982 - protein heterodimerization activity [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0045944 - positive regulation of transcription from RNA polymerase II promoter [Evidence IDA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 product : transcription factor AP-2, epsilon protein_id : NP_945198.2

name	Ncdn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31560513 CCDS:CCDS18659.1 GeneID:26562 MGI:1347351
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0045453 - bone resorption [Evidence IDA] codon_start : 1 exception : mismatches in translation note : neurochondrin-1; neurochondrin-2; minisatellite 10ae detected by probe MMS10 product : neurochondrin protein_id : NP_036116.2

name	AU040320 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78482609 CCDS:CCDS18660.1 GeneID:100317 MGI:2140475
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 2; likely ortholog of H. sapiens polycystic kidney disease 1-like (PKD1-like) product : polycystic kidney disease 1-like isoform 1 protein_id : NP_001030602.1

name	AU040320 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:78482611 CCDS:CCDS18660.1 GeneID:100317 MGI:2140475
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : isoform 1 is encoded by transcript variant 1; likely ortholog of H. sapiens polycystic kidney disease 1-like (PKD1-like) product : polycystic kidney disease 1-like isoform 1 protein_id : NP_001030603.1

name	AU040320 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956264 CCDS:CCDS18661.1 GeneID:100317 MGI:2140475
definition	GO_component : GO:0016020 - membrane [Evidence IEA] GO_function : GO:0005509 - calcium ion binding [Evidence IEA] GO_process : GO:0007156 - homophilic cell adhesion [Evidence IEA] codon_start : 1 note : isoform 2 is encoded by transcript variant 3; likely ortholog of H. sapiens polycystic kidney disease 1-like (PKD1-like) product : polycystic kidney disease 1-like isoform 2 protein_id : NP_598647.1

name	Sfpq (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:23956214 CCDS:CCDS18662.1 GeneID:71514 MGI:1918764
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006397 - mRNA processing [Evidence IEA]; GO:0000398 - nuclear mRNA splicing, via spliceosome [Evidence IEA]; GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006974 - response to DNA damage stimulus [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 note : PTB-associated splicing factor product : splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated) protein_id : NP_076092.1

name	Zmym1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:49227135 CCDS:CCDS18663.1 GeneID:68310 MGI:1915560
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 product : zinc finger, MYM domain containing 1 protein_id : NP_080946.3

name	Zmym6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29126191 CCDS:CCDS18664.1 GeneID:100177 MGI:106505
definition	GO_component : GO:0005575 - cellular_component [Evidence ND]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003674 - molecular_function [Evidence ND]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0008150 - biological_process [Evidence ND] codon_start : 1 note : transposase-like protein; probably fused to an N terminal zinc finger domain; likely ortholog of H. sapiens zinc finger protein 258 (ZNF258) product : zinc finger protein 258 protein_id : NP_803413.1

name	LOC100039968 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253119 GeneID:100039968
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001474601.1

name	LOC621588 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:82895184 GeneID:621588
definition	codon_start : 1 product : similar to ribosomal protein S28 protein_id : XP_891086.1

name	Dlgap3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38348480 CCDS:CCDS18665.1 GeneID:242667 MGI:3039563
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045202 - synapse [Evidence IDA] GO_process : GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : PSD-95/SAP90-binding protein 3; SAP90/PSD 95 associated protein 3 product : disks large-associated protein 3 protein_id : NP_941020.1

name	BC003266 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:13384892 GeneID:80284 MGI:1933141
definition	codon_start : 1 product : hypothetical protein LOC80284 protein_id : NP_084528.1

name	Gja4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680003 CCDS:CCDS18667.1 GeneID:14612 MGI:95715
definition	GO_component : GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA] GO_process : GO:0001568 - blood vessel development [Evidence IMP]; GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : connexin 37 product : gap junction membrane channel protein alpha 4 protein_id : NP_032146.1

name	Gjb3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680013 CCDS:CCDS18668.1 GeneID:14620 MGI:95721
definition	GO_component : GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA] GO_process : GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA]; GO:0001890 - placenta development [Evidence IMP] codon_start : 1 note : connexin 31; gap junction protein beta 3 product : gap junction membrane channel protein beta 3 protein_id : NP_032152.1

name	Gjb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6680015 CCDS:CCDS18669.1 GeneID:14621 MGI:95722
definition	GO_component : GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA] GO_process : GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : connexin 30.3 product : gap junction membrane channel protein beta 4 protein_id : NP_032153.1

name	Gjb5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753996 CCDS:CCDS18670.1 GeneID:14622 MGI:95723
definition	GO_component : GO:0005922 - connexon complex [Evidence IEA]; GO:0005921 - gap junction [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0015285 - connexon channel activity [Evidence IEA]; GO:0005243 - gap-junction forming channel activity [Evidence IEA] GO_process : GO:0007154 - cell communication [Evidence IEA]; GO:0007267 - cell-cell signaling [Evidence IEA] codon_start : 1 note : connexin 31.1 product : gap junction membrane channel protein beta 5 protein_id : NP_034421.1

name	LOC635169 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149253104 GeneID:635169
definition	codon_start : 1 product : hypothetical protein protein_id : XP_994893.2

name	4930465A12Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82895170 GeneID:74989 MGI:1922239
definition	codon_start : 1 product : hypothetical protein LOC74989 protein_id : XP_902736.1

name	Hmgb4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21312264 CCDS:CCDS18671.1 GeneID:69317 MGI:1916567
definition	GO_component : GO:0000785 - chromatin [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 exception : mismatches in translation product : high-mobility group box 4 protein_id : NP_081312.1

name	4930546G22Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149253121 GeneID:75242 MGI:1922492
definition	codon_start : 1 product : hypothetical protein LOC75242 protein_id : XP_001474861.1

name	Zscan20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244254 CCDS:CCDS18672.1 GeneID:269585 MGI:2679268
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003700 - transcription factor activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA] codon_start : 1 note : zinc finger with KRAB and SCAN domains 20 product : zinc finger protein 31 protein_id : NP_808426.1

name	Tlr12 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:45430001 CCDS:CCDS18673.1 GeneID:384059 MGI:3045221
definition	GO_component : GO:0016021 - integral to membrane [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0004872 - receptor activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0004888 - transmembrane receptor activity [Evidence IEA] GO_process : GO:0006955 - immune response [Evidence IEA]; GO:0006954 - inflammatory response [Evidence IEA]; GO:0045087 - innate immune response [Evidence IEA] codon_start : 1 product : toll-like receptor 12 protein_id : NP_991392.1

name	LOC667296 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667296
definition	number : 1 pseudo : _no_value

name	LOC620877 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253116 GeneID:620877
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 26 mRNAs, 847 ESTs, 1 Protein product : similar to ribosomal protein S2 pseudo : _no_value transcript_id : XR_031698.1

name	LOC665245 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149253117 GeneID:665245
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 81 ESTs, 2 Proteins product : similar to ribosomal protein L21 pseudo : _no_value transcript_id : XR_001775.2

clone name	MSMg01-165L20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-353O01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303B18
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-409P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-266A13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-488A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-067C04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-499M21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399I14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-161I23
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-402M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-353A24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-106J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-373H21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-470M05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391B02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-315N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540A19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-446N13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498I03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-460P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-117G24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-529H10
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-415I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-089M24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-467K02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366E17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-366J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-532J19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-362N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173C15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-431F13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-476M11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-415I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-526H19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-096L07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-463P16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-089G23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-376K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-119A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-136F23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181A06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398L12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-271F04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-386M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193P05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-157C16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450M15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-263N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-307F05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453D10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-321K11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-188K21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-383L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-173K17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-094F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-156M03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-262M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-498C06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-274N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-435F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-511B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542H09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234J03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332D12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-055L03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-375K18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053L11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-344F02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-539D23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-267L12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-264I04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381M08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-436H20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-063J13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-464F20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173P22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372J05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-439P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-133N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-465D16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-398O10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-058E24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-399F20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-092I18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-483A20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-361A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-347M08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-537F12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-085I22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-296M10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-104N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303F19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-414N18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-406M17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138A06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183E17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-227E14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-087H05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076C08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-122I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-268H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247L17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-091L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-091L13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345L23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131B17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-294A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-023H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-307C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-207B09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266I13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-215O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-314G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-304B05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344J21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175L08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106G22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-268N08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-287N20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241I19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-231N22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-339E02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-286C07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-194C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-021I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291C03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342N23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-114A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-236F12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-065J05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-277O17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-190K12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231H17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247K01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-215B12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-233M17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-241K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-158K22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156C06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216C09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-010I14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183A15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-315J23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250I05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-058M05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-074E10
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205L12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-316I23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-284M22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-058H07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-127D06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-195N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-106A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-239J16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330K08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276A17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-310N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-172O20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069I11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316C17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-250A08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-089N05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-099P08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-317D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-273E12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148G23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081D04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-129F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-350G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188G14
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-034D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-001J06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266H14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-296M15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-160L10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116D06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124O21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-323F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259J15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-264M08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-055P21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068N10
singlet/doublet	singlet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	B6Ng01-216C09.b	B6Ng01-216C09.g
ACC	GA032913	GA032914
length	1,051	1,150
definition	B6Ng01-216C09.b	B6Ng01-216C09.g
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	gaattccattatcttgcaggtctcagaattcgcaattttaggtcattccc taggtaaggctttaaaaatgctcacatttaggacattaaggaatcgtttt ccaaagctattccacccttctcgttgcccactcattgccctaactcagct ggctcgcccaaatgcctcctgactgctcttccttctgcagggccttccat gccaccctggtctcttgcaccgtgtaggtggcggtcatgctaacctctga ctctaatgcctgctcacttcctcatcctcctggtaacattcatttaggct cccagctgttctagatgtctccctcatccagccctatgccccccaaattc tggatctttttctcaacatttctacctgtcactttccactatctcccagt ggaaagcccagctcaccagccaccaccgtgtgcaaccttacttacttccc ttgaggaggattccttatggtacctttccttcctgtctgttcgcctaagt aaccagctaccgccttcagagtgggttagcatgctacataggttctttcc ctctggccccaggaatgtggggaatcagtgacatttgttaagtctttgga ggaagacgaagtggatttgcatctcgcctgagctattgacaaagcatgcg accttgggcgagttacttcacatccacgtgtggtggtttccacgttgtaa gtggggctaatcacaccgactccctaggtctcccagatgagggacagaga tctcagcacagtccctggtgctgccacgagcatcccatgattgtaaaatc caaaagtaaggaagccctgacaaaccttggagtcaagggaaaccactttt agtgatcaccccaattgtcatgcgtgtagctctaagtaatgattccttaa gctctatgtcacagatatcctgtcatgtgggtaagtcaaatctggacggg caaatggactccagcttaggccatttctgtgctgaggcatttctctaccc ctcttatccttgagctttgagcgattttagccgtccctcaaaataatccc a	gaattctattttattttgtatatgtttctgggtgcatctctttgtaaagg ctttccagttattctagctatgatattacacatacatatttgtttactta tttatttatttgtttatttattagatcagtatttgtgtcattccttaaca ttggtctactaaaaaaataagtgtttggggttaccttattattcctggtg gccgaagaagccaggtttccaagccaaggcttatttacacctgggggtgg ccatgtgcctccttcctacagggaaggttgggagtcccggttcctcaatg accctcactaggagatttagactaggagaattaagaggaccttgctccta agttatctccactgaccccacagaggagatggtagcctccttttttttag cagtggtaaagccctgtctctaagaggcctcctctgataccatttccata aagaatggcggaggtgtatggttacttccaggtagaggtggagtccagac tttataagcaatgctcattggtgccttgggagaccagggccttgttcctc cttgaacaagagaaaattccagctcccaacttggccttccctccagtggg ggtattggagcatctattccatttcagcgtttcagaggtagaaatctttg cttccaagggtggggcagaccataacttttagtgtgacatttatctacag tcagtggttacagtctaaaactttcttgttccattaccctgcccctttcc ttgtgttttgtctaagtagggtaaacttttattaaattatagaatgtttt ggggtcagcacttgatttttacttgcttgtttcttcaactctgattctgg gatacatgaagcaaaagattttaaatacaaaaaagtcaatatggctatgc tgcactcaggaaccaaagtccacagccctctttccttcttccctctccat tcccaagtctcttctatttgctttataatacatccagacagtatttgcat cttagtagagactagtagaaagactatctatttcatcagctcaggatggg gtctagagttatcttcttttcatttttttaagactaattatttattaatg agtcatggacctgtcttccgaacactccgaagagggagtcgaacctcgcg
quality values	Open. Hide. 58 36 14 22 58 58 35 18 54 54 49 41 47 54 54 47 42 39 62 47 42 62 62 41 38 54 62 37 41 62 62 44 62 35 35 44 34 32 37 44 28 25 35 25 33 43 62 62 62 62 62 62 62 62 62 62 62 62 49 62 62 62 59 62 62 62 62 62 59 59 62 62 59 62 62 62 62 62 62 59 59 54 54 56 59 62 62 62 62 62 54 54 54 59 62 62 62 62 62 62 62 59 62 62 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 59 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 56 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 54 62 62 62 62 62 62 62 62 62 62 62 54 54 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 42 62 62 47 49 45 41 58 58 58 58 58 58 58 58 58 58 58 47 58 58 58 58 58 58 58 58 58 58 58 58 58 54 58 58 58 58 58 54 58 58 54 58 58 48 54 58 58 58 58 51 58 58 58 54 58 58 58 58 58 58 58 54 58 47 58 54 58 58 58 58 58 58 58 58 58 58 58 58 58 58 52 54 54 58 58 49 54 48 58 54 54 58 58 52 58 58 54 52 51 58 58 50 58 58 51 53 50 58 58 48 43 58 46 53 58 58 58 58 42 32 53 47 50 52 58 44 29 50 51 58 58 53 50 40 50 58 50 51 53 53 58 49 51 49 51 37 46 47 54 39 51 25 32 58 54 25 52 58 40 41 30 58 58 41 52 42 53 50 53 46 40 49 58 52 51 51 24 51 50 39 25 58 51 49 46 42 49 58 37 50 39 47 51 52 42 33 28 58 40 52 51 58 44 52 52 58 18 31 39 29 35 52 54 42 42 40 39 41 50 49 29 41 50 40 43 32 58 41 35 49 49 25 58 34 41 46 31 42 42 45 53 53 33 26 52 39 45 52 54 54 49 29 39 29 51 32 45 32 44 23 50 44 34 40 38 49 24 49 52 45 41 11 50 31 39 52 29 54 27 34 34 39 22 37 37 11 54 40 31 24 38 37 51 29 31 30 37 43 34 31 32 43 43 34 36 37 34 40 54 44 30 54 42 38 42 32 34 40 35 47 26 37 28 51 23 45 28 40 22 47 36 33 29 32 41 28 32 31 24 32 52 52 32 31 26 35 28 51 49 32 21 31 31 31 28 33 31 45 24 27 46 30 31 31 31 26 27 45 29 23 31 38 35 30 27 24 15 28 31 24 35 21 51 35 42 51 30 19 32 29 43 36 48 46 31 38 27 32 38 31 28 31 31 31 48 46 33 20 33 22 27 30 18 31 19 31 31 24 31 30 32 21 32 27 26 37 32 32 21 36 22 34 31 31 26 31 31 20 32 18 36 21 28 18 31 16 28 32 32 24 25 27 36 27 27 35 32 7 6 10 8 8 14 20 31 31 31 16 26 23 32 26 25 8 37 31 27 29 37 27 34 34 21 48 26 31 33 19 30 9 29 18 29 44 36 22 19 43 30 31 25 30 20 21 30 14 37 31 12 28 8 21 16 21 21 21 23 17 26 48 19 24 14 28 8 19 16 23 22 26 29 34 19 12 30 48 21 19 17 21 15 15 33 43 34 8 13 20 28 31 6 6 13 21 13 19 7 27 8 18 17 38 14 25 8 8 9 4 14 24 40 47 18 29 10 15 15 17 20 21 28 12 15 20 24 33 47 28 13 15 21 27 13 32 16 20	Open. Hide. 62 47 56 47 62 62 62 62 62 62 62 42 42 32 32 32 28 29 46 56 59 56 37 43 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 59 59 62 62 54 59 62 62 62 62 62 59 59 59 59 54 43 54 56 62 59 59 59 62 59 62 62 62 54 54 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 59 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 59 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 59 62 62 62 62 62 62 59 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 59 59 62 62 62 59 62 62 62 62 62 62 62 62 54 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 49 49 62 62 62 54 51 62 56 62 62 54 62 62 62 62 62 62 62 62 62 62 62 62 62 62 47 62 62 62 62 45 47 62 62 62 62 62 62 62 38 62 62 62 62 62 54 42 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 62 52 62 54 58 54 54 53 58 49 58 51 58 58 54 52 52 58 54 58 58 58 52 54 58 58 54 58 52 58 58 58 58 58 58 52 58 54 58 45 54 58 48 58 58 40 58 58 58 54 42 42 30 58 54 54 58 58 52 58 58 58 58 54 58 52 58 45 46 58 48 49 48 58 51 40 38 58 50 58 37 58 58 58 50 41 58 50 58 50 51 58 58 51 58 51 39 51 51 49 41 53 46 41 54 54 54 48 58 58 47 42 44 35 53 50 58 58 58 58 58 31 35 35 58 58 51 58 32 51 50 53 53 53 49 51 38 49 50 37 54 58 52 41 39 50 54 52 40 58 50 50 41 32 46 14 58 29 52 42 58 58 40 37 52 42 58 52 51 40 37 42 32 47 21 34 34 54 54 24 38 54 54 49 34 42 19 53 23 53 39 53 46 47 53 40 54 54 27 45 39 37 33 24 35 40 25 31 44 49 39 40 40 53 39 31 47 33 53 33 47 31 53 28 54 38 24 28 31 40 31 40 33 45 18 11 54 54 51 34 52 53 53 53 32 32 52 32 42 52 32 29 37 53 40 31 49 42 35 39 31 46 46 46 51 53 34 32 34 32 34 53 37 53 37 53 53 46 51 24 45 33 22 45 31 36 42 25 46 46 22 31 51 33 30 34 51 51 33 36 28 33 32 51 31 30 33 36 31 31 30 42 30 29 46 19 48 46 33 32 46 46 46 24 31 22 29 38 35 42 31 42 39 31 21 46 46 46 41 29 36 31 33 31 28 20 32 46 27 46 23 32 24 33 31 12 31 31 37 36 31 24 36 24 26 31 25 32 48 31 15 26 22 27 14 25 36 26 33 25 31 28 46 48 36 18 31 23 48 48 33 15 48 30 25 18 31 30 38 44 44 48 31 21 28 36 22 21 31 27 38 35 38 24 30 30 31 31 24 25 34 20 18 30 37 33 11 21 20 25 25 16 31 21 36 34 15 22 22 26 23 23 22 15 13 33 14 17 25 22 48 33 12 19 16 8 20 17 34 12 48 20 11 14 19 18 34 21 19 20 12 43 22 13 26 31 27 19 20 39 19 29 27 18 16 16 34 21 13 21 21 40 15 10 14 16 22 5 11 8 10 28 11 21 11 31 6 12 15 19 6 10 13 27 21 20 19 10 7 6 5 10 20 13 17 26 5 6 3 5 20 13 16 3 3 16 17 10 34 15 6 22 19 16 20 27 24 11 7 6 17 21 8 7 21 21 10 9 6 16 13 7 7 8 5 1 5 25 7 19 3 6 14 10 6 23 13 8 8 17 5 8 7 5 5 3 3 24 16 17 4 24 28 28 27 28 17 14 16 11 9 21 12 21 5 8 10 5 4 15 30 21 7 23 10 8 16 7 3 3 2 9 16 10 11 5 6 5 5 5 9 16 5 6 8 23 9 19 5 10 15 4 3 9 4 9 11 1 15 11 8 23 8 17 4 6 5 3 3 4 11 22 5 4 6 8 4 3 4

Alignment Information

BAC End 1

BAC End 2

seq1: chr4_127301948_127302976
seq2: B6Ng01-216C09.b_44_1062

seq1  GAATTCCATTATCTTGCAGGTCTCAGAATTCGCAATTTTAGGTCATTCCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATTATCTTGCAGGTCTCAGAATTCGCAATTTTAGGTCATTCCC  50

seq1  TAGGTAAGGCTTTAAAAATGCTCACATTTAGGACATTAAGGAATCGTTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTAAGGCTTTAAAAATGCTCACATTTAGGACATTAAGGAATCGTTTT  100

seq1  CCAAAGCTATTCCACCCTTCTCGTTGCCCACTCATTGCCCTAACTCAGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGCTATTCCACCCTTCTCGTTGCCCACTCATTGCCCTAACTCAGCT  150

seq1  GGCTCGCCCAAATGCCTCCTGACTGCTCTTCCTTCTGCAGGGCCTTCCAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCGCCCAAATGCCTCCTGACTGCTCTTCCTTCTGCAGGGCCTTCCAT  200

seq1  GCCACCCTGGTCTCTTGCACCGTGTAGGTGGCGGTCATGCTAACCTCTGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCTGGTCTCTTGCACCGTGTAGGTGGCGGTCATGCTAACCTCTGA  250

seq1  CTCTAATGCCTGCTCACTTCCTCATCCTCCTGGTAACATTCATTTAGGCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAATGCCTGCTCACTTCCTCATCCTCCTGGTAACATTCATTTAGGCT  300

seq1  CCCAGCTGTTCTAGATGTCTCCCTCATCCAGCCCTATGCCCCCCAAATTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCTGTTCTAGATGTCTCCCTCATCCAGCCCTATGCCCCCCAAATTC  350

seq1  TGGATCTTTTTCTCAACATTTCTACCTGTCACTTTCCACTATCTCCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGATCTTTTTCTCAACATTTCTACCTGTCACTTTCCACTATCTCCCAGT  400

seq1  GGAAAGCCCAGCTCACCAGCCACCACCGTGTGCAACCTTACTTACTTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGCCCAGCTCACCAGCCACCACCGTGTGCAACCTTACTTACTTCCC  450

seq1  TTGAGGAGGATTCCTTATGGTACCTTTCCTTCCTGTCTGTTCGCCTAAGT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGAGGATTCCTTATGGTACCTTTCCTTCCTGTCTGTTCGCCTAAGT  500

seq1  AACCAGCTACCGCCTTCAGAGTGGGTTAGCATGCTACATAGGTTCTTTCC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAGCTACCGCCTTCAGAGTGGGTTAGCATGCTACATAGGTTCTTTCC  550

seq1  CTCTGGCCCCAGGAATGTGGGGAATCAGTGACATTTGTTAAGTCTTTGGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGCCCCAGGAATGTGGGGAATCAGTGACATTTGTTAAGTCTTTGGA  600

seq1  GGAAGACGAAGTGGATTTGCATCTCGCCTGAGCTATTGACAAAGCATGCG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGACGAAGTGGATTTGCATCTCGCCTGAGCTATTGACAAAGCATGCG  650

seq1  ACCTTGGGCGAGTTACTTCACATCCACGTGTGGTGGTTTCCACGTTGTAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGGGCGAGTTACTTCACATCCACGTGTGGTGGTTTCCACGTTGTAA  700

seq1  GTGGGGCTAATCACACCGACTCCCTAGGTCTCCCAGATGAGGGACAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGCTAATCACACCGACTCCCTAGGTCTCCCAGATGAGGGACAGAGA  750

seq1  TCTCAGCACAGTCCCTGGTGCTGCCACGAGCATCCCATGATTGTAAAATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGCACAGTCCCTGGTGCTGCCACGAGCATCCCATGATTGTAAAATC  800

seq1  CAAAAGTAAGGAAGCCCTGACAAACCTTGGAGTCAAGGGAAACCACTTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAGTAAGGAAGCCCTGACAAACCTTGGAGTCAAGGGAAACCACTTTT  850

seq1  AGTGATCACCCCAATTGTCATGCGTGTAGCTCTAAGTAATGATTCCTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGATCACCCCAATTGTCATGCGTGTAGCTCTAAGTAATGATTCCTTAA  900

seq1  GCTCTATGTCACAGGATAATCCTGTCATGTTGGGTAAGTCAAATCTGGAA  950
      ||||||||||||| ||| ||||||||||| ||||||||||||||||||| 
seq2  GCTCTATGTCACA-GAT-ATCCTGTCATG-TGGGTAAGTCAAATCTGGA-  946

seq1  CGGGGCAAATGGACTCCAGCCTTAGGCCATTTCCTGTGCTGAGGGCATTT  1000
        ||||||||||||||||| |||||||||||| ||||||||| |||||||
seq2  -CGGGCAAATGGACTCCAG-CTTAGGCCATTT-CTGTGCTGA-GGCATTT  992

seq1  CTCTACCCCTCTTTATCCTTGAAGCTTTG  1029
      ||||||||||| ||||||||| |||||||
seq2  CTCTACCCCTC-TTATCCTTG-AGCTTTG  1019

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information