BAC Information

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BAC

Clone NameB6Ng01-216F03
Chromosome4 (Build37)
Map Location 13,847,689 - 13,848,883
singlet/doubletsinglet
Overlap genenone
Upstream geneOTTMUSG00000004461, LOC100039988, Runx1t1
Downstream geneLOC625831, LOC433687, LOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216F03.bB6Ng01-216F03.g
ACCGA033043GA033044
length1,1911,208
definitionB6Ng01-216F03.b B6Ng01-216F03.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataatttgctaaacacatgaaactcaag
gagaatgaagactgaagtgtggtcactatgcccctccttagatttgggaa
caaaacacccatggaaggagttacagagacggagtttggagctgagatga
aaggatggaccatgtagagactgccatagccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttattgaaa
ggacgcagatgtagctgtctcttgtgagactatgccggggcccagcaaac
acagaagtggatgctcacagtcagctaatggatggatcatagggctccca
atggaggagctagagaaagtagccaaggagctaaagggatctgcacccta
taggtggaacacattatggagctaaccagtaccccggagctcttgactct
agctgcaatatatatcaaaagatggctagtcgggcatccacttgaaagga
gaggccatggactgccaactttatacgcccaagttacagggatacaggtc
aaaaaagggtgagagtgtgggtgggctagcggaaagtgggg
gaattcctcttggtctcattgttcacaacgcaatgccacatgcagccgtg
aacacactcatactcctaaagtcttcccatctgattgtgtggaaagggaa
agagaactttcagagcaaggcgaccaagagtcaaccaaactttttttctg
cagtagttgtttgtttaatccatgtaggagaaaaatattggtggtagaaa
tctaggtataataacttatgaactttttgcaacccaacggctatacaatt
atatgtttgaaagctgttaatattcttgtaaaatagaaaatatttgtgat
tggttgcctgagttctaatttcctatctaaatgaactattcctttatttc
attcctcaattcctcatttttcaagatatccaaatgtcaaatattttcat
tttcttatcttgaagccactttaaaaaactgaattaatagaataaaaaca
ttctatagtatttgtggcttttgttatgggacaacaaacacttcaaacaa
attcttggtatctaatttccaaccattgtgacagcacatagttagcagaa
tgacagctctaactggaatactgtatgtagcatcttctgctaggtgcagt
ggcactgaatacatatcagtggcaaggtcattagtgactcagtcaggcag
tatgttacatgccagacatctgtgaacctactctgtgcagctctgatact
ggagatgacggcttagcatttggttatattttgttattcaagttcacttg
ctcccttctggtaggacaaaccaagttgacatcgtcagcttcacacagat
gcaaagatggtaagctggtctgttaagagaccggcgcctactcatatttt
aatattctcagaagcaccactctgtattcgttttcctttcacatacatag
tatcaatactagctataaagtgatgatttaacacagaattcttttctttt
tgggcatgatttgttggttagaatggaatattgcacagtaagagcattca
gattaatgttcctcaccaacagagaatcaccacattaattcttgcttgaa
tttcaaggcagatgatttctttgattcctctttttaattacaaccgaaga
cgaacaattggtaaggctgagaaggtgaatgctgaaacattcacagatga
agaaagctacgcttgatgtccttgcaaggagaaataataagccaaggaaa
cctaaatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_13847689_13848883
seq2: B6Ng01-216F03.g_68_1275

seq1  GAATTCCTCTTGGTCTCATTGTTCACAACGCAATGCCACATGCAGCCGTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTCTTGGTCTCATTGTTCACAACGCAATGCCACATGCAGCCGTG  50

seq1  AACACACTCATACTCCTAAAGTCTTCCCATCTGATTGTGTGGAAAGGGAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACACACTCATACTCCTAAAGTCTTCCCATCTGATTGTGTGGAAAGGGAA  100

seq1  AGAGAACTTTCAGAGCAAGGCGACCAAGAGTCAACCAAACTTTTTTTCTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAACTTTCAGAGCAAGGCGACCAAGAGTCAACCAAACTTTTTTTCTG  150

seq1  CAGTAGTTGTTTGTTTAATCCATGTAGGAGAAAAATATTGGTGGTAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTGTTTGTTTAATCCATGTAGGAGAAAAATATTGGTGGTAGAAA  200

seq1  TCTAGGTATAATAACTTATGAACTTTTTGCAACCCAACGGCTATACAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTATAATAACTTATGAACTTTTTGCAACCCAACGGCTATACAATT  250

seq1  ATATGTTTGAAAGCTGTTAATATTCTTGTAAAATAGAAAATATTTGTGAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGTTTGAAAGCTGTTAATATTCTTGTAAAATAGAAAATATTTGTGAT  300

seq1  TGGTTGCCTGAGTTCTAATTTCCTATCTAAATGAACTATTCCTTTATTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTGCCTGAGTTCTAATTTCCTATCTAAATGAACTATTCCTTTATTTC  350

seq1  ATTCCTCAATTCCTCATTTTTCAAGATATCCAAATGTCAAATATTTTCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTCAATTCCTCATTTTTCAAGATATCCAAATGTCAAATATTTTCAT  400

seq1  TTTCTTATCTTGAAGCCACTTTAAAAAACTGAATTAATAGAATAAAAACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTATCTTGAAGCCACTTTAAAAAACTGAATTAATAGAATAAAAACA  450

seq1  TTCTATAGTATTTGTGGCTTTTGTTATGGGACAACAAACACTTCAAACAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATAGTATTTGTGGCTTTTGTTATGGGACAACAAACACTTCAAACAA  500

seq1  ATTCTTGGTATCTAATTTCCAACCATTGTGACAGCACATAGTTAGCAGAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTTGGTATCTAATTTCCAACCATTGTGACAGCACATAGTTAGCAGAA  550

seq1  TGACAGCTCTAACTGGAATACTGTATGTAGCATCTTCTGCTAGGTGCAGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGCTCTAACTGGAATACTGTATGTAGCATCTTCTGCTAGGTGCAGT  600

seq1  GGCACTGAATACATATCAGTGGCAAGGTCATTAGTGACTCAGTCAGGCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCACTGAATACATATCAGTGGCAAGGTCATTAGTGACTCAGTCAGGCAG  650

seq1  TATGTTACATGCCAGACATCTGTGAACCTACTCTGTGCAGCTCTGATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTTACATGCCAGACATCTGTGAACCTACTCTGTGCAGCTCTGATACT  700

seq1  GGAGATGACGGCTTAGCATTTGGTTATATTTTGTTATTCAAGTTCACTTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGACGGCTTAGCATTTGGTTATATTTTGTTATTCAAGTTCACTTG  750

seq1  CTCCCTTCTGGTAGGACAAACCAAGTTGACATCGTCAGCTTCACACAGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCTTCTGGTAGGACAAACCAAGTTGACATCGTCAGCTTCACACAGAT  800

seq1  GCAAAGATGGTAAGCTGGTCTGTTAAGAGACCGGCGCCTACTCATA-TTT  849
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GCAAAGATGGTAAGCTGGTCTGTTAAGAGACCGGCGCCTACTCATATTTT  850

seq1  AATATTCTCAGAAGCACCACTCTGTATTCGTTTTCC-TTCACATACATAG  898
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AATATTCTCAGAAGCACCACTCTGTATTCGTTTTCCTTTCACATACATAG  900

seq1  TATCAATACTAGCTATAAAGTGATGATTTAACACAAGATTC-TTTCTTTT  947
      |||||||||||||||||||||||||||||||||||  |||| ||||||||
seq2  TATCAATACTAGCTATAAAGTGATGATTTAACACAGAATTCTTTTCTTTT  950

seq1  T-GGCATGATTTGTTGGTTAG-ATGGAATATTGCACAGTAAGAGCA-TCA  994
      | ||||||||||||||||||| |||||||||||||||||||||||| |||
seq2  TGGGCATGATTTGTTGGTTAGAATGGAATATTGCACAGTAAGAGCATTCA  1000

seq1  GATTAATG-TCCTCACCAACAGAG-ATCACCACCATTAATTCTTGCT--G  1040
      |||||||| ||||||||||||||| ||||||| ||||||||||||||   
seq2  GATTAATGTTCCTCACCAACAGAGAATCACCA-CATTAATTCTTGCTTGA  1049

seq1  ATTTC-AGGGAGATGATTTCTTTGATT-CTC-TTTTAAATACAAACGAAG  1087
      ||||| ||| ||||||||||||||||| ||| |||||| ||||| |||||
seq2  ATTTCAAGGCAGATGATTTCTTTGATTCCTCTTTTTAATTACAACCGAAG  1099

seq1  ACGAACAATTGGTAGGCCTTGAGGAGGCAGAACGCTGAACAATTCACAGA  1137
      |||||||||||||| | | |||| |||  ||| ||||||  |||||||||
seq2  ACGAACAATTGGTAAGGC-TGAGAAGG-TGAATGCTGAAACATTCACAGA  1147

seq1  TG-AGAAGGTAAAGCTTGATG-CTCTGCAGGGAGGAAATAATA--CCAAG  1183
      || |||| |  | |||||||| |  |||| ||| |||||||||  |||||
seq2  TGAAGAAAGCTACGCTTGATGTCCTTGCAAGGA-GAAATAATAAGCCAAG  1196

seq1  GAAACATAAATG  1195
      ||||| ||||||
seq2  GAAACCTAAATG  1208