BAC Information

Click to search

BAC

Clone NameB6Ng01-216J13
Chromosome4 (Build37)
Map Location 118,858,764 - 119,033,682
singlet/doubletdoublet
Overlap geneErmap, Ccdc23, 4930538K18Rik, AU022252, Lepre1, Cldn19, Ybx1, Ppih, 1700041C02Rik, Ldha-ps2
Upstream genePtprf, Hyi, BC059842, Med8, Elovl1, Cdc20, Mpl, Tie1, LOC545675, LOC666596, 2610528J11Rik, 6330530A05Rik, 1110020C03Rik, Ebna1bp2, LOC100041290, Olfr62, Olfr1343-ps1, Olfr1342, Olfr1341, Olfr1340, Olfr1339, Olfr1338, Olfr1524-ps1, Olfr1337, Olfr219-ps1, GA_x5J8B7W3BSW-40181-41086, Olfr1335, Olfr1333, GA_x5J8B7TQTH0-2-774, Olfr1332-ps1, Olfr1331, Olfr1330, Olfr1329, Olfr1519, Lao1, LOC666703, OTTMUSG00000008833, Slc2a1, Zfp691
Downstream geneLOC100041471, Ppcs, Zmynd12, BC057371, LOC666766, LOC384052, AA415398, Foxj3, Guca2a, Guca2b, Hivep3, Edn2, Foxo6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216J13.bB6Ng01-216J13.g
ACCGA033246GA033247
length1,0031,049
definitionB6Ng01-216J13.b B6Ng01-216J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(119,033,151 - 119,033,682)(118,858,764 - 118,859,795)
sequence
gaattctctttagctgggctagtgaaatgtcagtaactcctgagagttgt
cctctgattgccacacatacactgtggcatgcatacatacacatgtgcac
acgcacgcacacacgcacgcacatacatacacatgcgcacacacacaaat
gtagcacacatacacacacacaggcacacacacaaatgtaatacacacac
tggcacacacacacaggcacacacacacacaggcacacacacaaatgtaa
cacatatacacacacacacaggcacacacacaaatgtaacacatacatgc
acacaggcacacacaaatgtaatatacacactggcacacacacaggcaca
catacaaatgtaacatatatatacacacaggcacacacacaaatgtaaca
cacatacacacacacaagcacacacacaaatgtaatacacacactggtac
acaggcacacacacaaacacatacaaatgtttatacaggcacacacaggc
acacatacaaatgtagcacacatgcatgcacacaggcacacacacaaatg
taatatacacactggcacacacacaggcacacacaaatgtaacacatata
cacacacaggctcacacacaaatgtaacacacacacacaggcacacacac
aaatgtaacacacacacacaggcacacacacaaatgtaacacacatgcac
acaggcacacacacaaatgtaatacatacatacaggcacacacacaaatg
taataaattttaaaaactaaatgtggggctggagagttggctcagctatt
aagagcactgtctgctcttccagaagtcccaggtttaattcccagcaacc
acaactatctgtatctccagttataggggaccttgacactttttttggcc
tccacaggcaccaagcacacaagggggtatacagggcatacatgcagggc
cataaatataaaaacaattttaaactgttttttaagaaaaacctagaaaa
taa
gaattcatccctctggggcatgtaaccaaatggcaatcaaaaggtgatca
gaggctggagagatggctcaggggttaagagtactgcttgctcttccaga
gaacccaggtttggttcccaacacccacatggcaactcacaaatgtcttt
aattccagttccaggagatctgaccctctcttctggtgtctgttgtccct
aggtacccatatggtgtacagacatacatgcaggcaaaacacccacacac
atagaataaaaacaaataaatcttcaaagtgatgatctagggtgacttca
cagagctgacatggaacaaacgcagagacttggactgggtttgaggtaga
ctgacttttctaaaaaaacactgaagatggtttgagaagcagtatctgcc
ttctggccctttacatactcagaactcagagaggagctgtgcagcaaatc
cttgtcacagctgggaattctgagcctggaggacttttccttgcagccct
gattttgagcttcttttttttttttttttttttttttttttttttgggtt
ttttgagacagggtttctctgtgtagctctggctgtcctggaactcactt
tgtagaccaggctggcctcgaactcagaaatccgcctgcctctgcctccc
aagtgctgggaataaaggcgtgcgccaccacgcccagctgattttgagct
tcttggtagcggagaaaaagaaaagctttcttttgttgtctgagctaaca
agtttacaggtcaaccaactgtgcttatccaggtcctataattggacaat
gttttccaaaagtctaagttcctccccctcctcacaacaaaacaccagtc
agggtttcacttagtttgaatggacaaggactgggagaaagtccagggct
gaataaagcagctgtctacaatggacccgggccctctcaaactggtgcta
cctgcaacctgcagggtcacgttgttcttcctgacttgagtttcgaacca
gacctggcactggtatatagcccttcgtctcgaggcctcacatttactg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_119033151_119033682
seq2: B6Ng01-216J13.b_40_571 (reverse)

seq1  TGTGCATGCATGTGTGCTACATTTGTATGTGTGCCTGTGTGTGCCTGTAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCATGCATGTGTGCTACATTTGTATGTGTGCCTGTGTGTGCCTGTAT  50

seq1  AAACATTTGTATGTGTTTGTGTGTGTGCCTGTGTACCAGTGTGTGTATTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACATTTGTATGTGTTTGTGTGTGTGCCTGTGTACCAGTGTGTGTATTA  100

seq1  CATTTGTGTGTGTGCTTGTGTGTGTGTATGTGTGTTACATTTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTGTGTGTGTGCTTGTGTGTGTGTATGTGTGTTACATTTGTGTGTGT  150

seq1  GCCTGTGTGTATATATATGTTACATTTGTATGTGTGCCTGTGTGTGTGCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTGTGTATATATATGTTACATTTGTATGTGTGCCTGTGTGTGTGCC  200

seq1  AGTGTGTATATTACATTTGTGTGTGCCTGTGTGCATGTATGTGTTACATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTGTATATTACATTTGTGTGTGCCTGTGTGCATGTATGTGTTACATT  250

seq1  TGTGTGTGTGCCTGTGTGTGTGTGTATATGTGTTACATTTGTGTGTGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGTGCCTGTGTGTGTGTGTATATGTGTTACATTTGTGTGTGTGC  300

seq1  CTGTGTGTGTGTGTGCCTGTGTGTGTGTGCCAGTGTGTGTATTACATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTGTGTGTGTGCCTGTGTGTGTGTGCCAGTGTGTGTATTACATTTG  350

seq1  TGTGTGTGCCTGTGTGTGTGTATGTGTGCTACATTTGTGTGTGTGCGCAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTGCCTGTGTGTGTGTATGTGTGCTACATTTGTGTGTGTGCGCAT  400

seq1  GTGTATGTATGTGCGTGCGTGTGTGCGTGCGTGTGCACATGTGTATGTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTATGTATGTGCGTGCGTGTGTGCGTGCGTGTGCACATGTGTATGTAT  450

seq1  GCATGCCACAGTGTATGTGTGGCAATCAGAGGACAACTCTCAGGAGTTAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATGCCACAGTGTATGTGTGGCAATCAGAGGACAACTCTCAGGAGTTAC  500

seq1  TGACATTTCACTAGCCCAGCTAAAGAGAATTC  532
      ||||||||||||||||||||||||||||||||
seq2  TGACATTTCACTAGCCCAGCTAAAGAGAATTC  532

seq1: chr4_118858764_118859795
seq2: B6Ng01-216J13.g_68_1116

seq1  GAATTCATCCCTCTGGGGCATGTAACCAAATGGCAATCAAAAGGTGATCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATCCCTCTGGGGCATGTAACCAAATGGCAATCAAAAGGTGATCA  50

seq1  GAGGCTGGAGAGATGGCTCAGGGGTTAAGAGTACTGCTTGCTCTTCCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCTGGAGAGATGGCTCAGGGGTTAAGAGTACTGCTTGCTCTTCCAGA  100

seq1  GAACCCAGGTTTGGTTCCCAACACCCACATGGCAACTCACAAATGTCTTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACCCAGGTTTGGTTCCCAACACCCACATGGCAACTCACAAATGTCTTT  150

seq1  AATTCCAGTTCCAGGAGATCTGACCCTCTCTTCTGGTGTCTGTTGTCCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCAGTTCCAGGAGATCTGACCCTCTCTTCTGGTGTCTGTTGTCCCT  200

seq1  AGGTACCCATATGGTGTACAGACATACATGCAGGCAAAACACCCACACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTACCCATATGGTGTACAGACATACATGCAGGCAAAACACCCACACAC  250

seq1  ATAGAATAAAAACAAATAAATCTTCAAAGTGATGATCTAGGGTGACTTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAAAAACAAATAAATCTTCAAAGTGATGATCTAGGGTGACTTCA  300

seq1  CAGAGCTGACATGGAACAAACGCAGAGACTTGGACTGGGTTTGAGGTAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCTGACATGGAACAAACGCAGAGACTTGGACTGGGTTTGAGGTAGA  350

seq1  CTGACTTTTCTAAAAAAACACTGAAGATGGTTTGAGAAGCAGTATCTGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTTTTCTAAAAAAACACTGAAGATGGTTTGAGAAGCAGTATCTGCC  400

seq1  TTCTGGCCCTTTACATACTCAGAACTCAGAGAGGAGCTGTGCAGCAAATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGGCCCTTTACATACTCAGAACTCAGAGAGGAGCTGTGCAGCAAATC  450

seq1  CTTGTCACAGCTGGGAATTCTGAGCCTGGAGGACTTTTCCTTGCAGCCCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTCACAGCTGGGAATTCTGAGCCTGGAGGACTTTTCCTTGCAGCCCT  500

seq1  GATTTTGAGCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  GATTTTGAGCTTCTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTT  550

seq1  TTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAGACAGGGTTTCTCTGTGTAGCTCTGGCTGTCCTGGAACTCACTT  600

seq1  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGACCAGGCTGGCCTCGAACTCAGAAATCCGCCTGCCTCTGCCTCCC  650

seq1  AAGTGCTGGGATTAAAGGCGTGCGCCACCACGCCCAGCTGATTTTGAGCT  700
      ||||||||||| ||||||||||||||||||||||||||||||||||||||
seq2  AAGTGCTGGGAATAAAGGCGTGCGCCACCACGCCCAGCTGATTTTGAGCT  700

seq1  TCTTGGTAGCGGAGAAGA--GAAAGC-TTCCTTTGTTGTCTGAGCTAACA  747
      |||||||||||||||| |   ||||| ||| |||||||||||||||||||
seq2  TCTTGGTAGCGGAGAAAAAGAAAAGCTTTCTTTTGTTGTCTGAGCTAACA  750

seq1  AGTTTACAGGTC-ACCAACTGTGCTTATCCAGGTCCTAT-ATTGGACAAT  795
      |||||||||||| |||||||||||||||||||||||||| ||||||||||
seq2  AGTTTACAGGTCAACCAACTGTGCTTATCCAGGTCCTATAATTGGACAAT  800

seq1  GTTTTCC-AAAGTCCAAGTTCCT-CCCCTCCTCACAACAAAACACCAGTC  843
      ||||||| |||||| |||||||| ||||||||||||||||||||||||||
seq2  GTTTTCCAAAAGTCTAAGTTCCTCCCCCTCCTCACAACAAAACACCAGTC  850

seq1  AGGGTTTCACTAAG-TTGAATGGAC-AGGACT-GGAG-AAGTCCA-GGCT  888
      ||||||||||| || |||||||||| |||||| |||| ||||||| ||||
seq2  AGGGTTTCACTTAGTTTGAATGGACAAGGACTGGGAGAAAGTCCAGGGCT  900

seq1  G-ATAAAGCAGCTGTC-ACAAATGACCCGGGCCC-CTCCAACCTGTGCTA  935
      | |||||||||||||| ||||  ||||||||||| ||| |||  ||||| 
seq2  GAATAAAGCAGCTGTCTACAATGGACCCGGGCCCTCTCAAACTGGTGCT-  949

seq1  ACCTGCCACCTGCAGGGTCACGTTG-TCTTCTCGACTTGAGTTTCCGACC  984
      |||||| |||||||||||||||||| |||||  ||||||||||| ||| |
seq2  ACCTGCAACCTGCAGGGTCACGTTGTTCTTCCTGACTTGAGTTT-CGAAC  998

seq1  CAGACCTGGCACTGG--TATAGCCCTCGGTCCTCGA-GCCTCACA-TTAC  1030
      |||||||||||||||  |||||||||  || ||||| |||||||| ||||
seq2  CAGACCTGGCACTGGTATATAGCCCTTCGT-CTCGAGGCCTCACATTTAC  1047

seq1  TG  1032
      ||
seq2  TG  1049