BAC Information

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BAC

Clone NameB6Ng01-216J15
Chromosome4 (Build37)
Map Location 122,824,223 - 122,947,152
singlet/doubletdoublet
Overlap geneHpcal4, Nt5c1a, Heyl, LOC194197
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie
Downstream geneLOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1, D830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216J15.bB6Ng01-216J15.g
ACCGA033250GA033251
length1,1371,046
definitionB6Ng01-216J15.b B6Ng01-216J15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,824,223 - 122,825,362)(122,946,124 - 122,947,152)
sequence
gaattcctgtcctggcttcctttgatggtgaactgtgctgtggatgtata
aacccaataaaccctttcctccccaacttgctttttggtcgtggtgtttc
attgcagcaatagaaaccctgactaagacagaccatgttaccccctttag
gtgtcccaaaagtgactgcgtcagacagcataaccatcagaacaataaga
gtcgtgacaaaccagacctgtctatctcattaaatgctctggaaatccgc
ctacgacatcagtgatgaactcaagctctggcagtagataggactcatct
tttcacatgataatggattttagaattacgggtctttacagtgctctggg
tctcgcagtgagtaggaaagtaggaagcattcttttctgtattacacaga
aggaggttacatatcacagccacgcttgacacaagctgtattgtgctctt
gtgcaaggaccttgtcaggttatttagcacagtttcctcagcccactgta
caactctttgacatttagtagagttttaatatctgatgaatgaagcagag
aaaaagcatcttttcaataaagttggaatggaaaattctattcttagcac
attgggtgtctgggcctctctcactgaggctgaatcacaggctgtgggtt
gctgtcataggaggtgtatttatgtgaagcaacagccctagcgggaacag
caaacatgaatgtggaggggcaggtgctaagagctatactgcagcaggct
cctaaagaaaagaacaagcttgaggctagggatgtagcttagttagaaca
ttcgcatagcatgtgcaaggctgtgggttccatcttcagcaccagaggga
agaaaaaaaaaaaaaaaagtaagaaagaacaaccaaacggaagtctgcag
ctcttggcagccacagtccaccaggggtcctttgagttctaactgaatca
gtgtttggtggcttggaagatgtttgagggaccagaagctaaaacaggct
atctgtgagccaggacacattactggtgtggacaggaggagtcatgtcca
gtctgttcaccagttctagagctgtgccactttcctgctacatagacatt
ctcaagcaccggttcacccaatacccgagcctctagc
gaattccagtttgacctgagtggtgctccctacaaatttaggagaacttc
tcaagctgcttaaagctgatcacgtggagttatgattccatccctccctg
ctgacatctgtggaggctcacaccgtagagcactatggcccaattcttca
ctgacctagcctacaaggcacctttagttcctttgctttttttttttttc
tggccagagaactgcttagtgtttggtaagtgccacaggttttttgtttt
gttttgtttttttgtttttgtttttatgagacagggtttctctgtgtagc
cctggctgtcctggaactcactctgtagaccaggctggcctcgaactcag
aaatctgcctgcctctgcctcccaagtgttgggattaaagacgtgtgcca
ccacgcccagctgtaaatgtcacaggtaacaaaggtaaaaagcccctaga
cttatctgtaccctttcctgggtcagatggaacgtcacacatgggtcttc
aggggtacaacattataaggtctagtcccccagatgttctaagccatttt
catgctccttctgagatacaacaagatatctggctccagaataagccata
ttttatctccacggaggtaagccttgtgttttcaccctgatagaggtcat
tcttagcagcatagtttcagaccagtcgaaagcaagcaaaagttggaaac
ctccttaaatttaactgttttagacccctcccccttaaatcctcctagta
tttatgtaacttttgcaagaacagactctatcctgcaactcacagggcta
ccaggagatagcactgccactctggtctccttccactgtggatgctgttt
gatgcacctggggattttcaattccagaacttttccatctcgagcttggg
cccccacaaacctccaaacctatgcagcagcagggaaaatatgcgtggat
caatcactgcttgcccggaatagttgatcacactgtgaaaccctgagatt
gtggggttgctttttttacctgaaaaataccctgttcatgttgtgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_122824223_122825362
seq2: B6Ng01-216J15.b_42_1178

seq1  GAATTCCTGTCCTGGCTTCCTTTGATGGTGAACTGTGCTGTGGATGTATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGTCCTGGCTTCCTTTGATGGTGAACTGTGCTGTGGATGTATA  50

seq1  AACCCAATAAACCCTTTCCTCCCCAACTTGCTTTTTGGTCGTGGTGTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCCAATAAACCCTTTCCTCCCCAACTTGCTTTTTGGTCGTGGTGTTTC  100

seq1  ATTGCAGCAATAGAAACCCTGACTAAGACAGACCATGTTACCCCCTTTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAGCAATAGAAACCCTGACTAAGACAGACCATGTTACCCCCTTTAG  150

seq1  GTGTCCCAAAAGTGACTGCGTCAGACAGCATAACCATCAGAACAATAAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCCCAAAAGTGACTGCGTCAGACAGCATAACCATCAGAACAATAAGA  200

seq1  GTCGTGACAAACCAGACCTGTCTATCTCATTAAATGCTCTGGAAATCCGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGTGACAAACCAGACCTGTCTATCTCATTAAATGCTCTGGAAATCCGC  250

seq1  CTACGACATCAGTGATGAACTCAAGCTCTGGCAGTAGATAGGACTCATCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACGACATCAGTGATGAACTCAAGCTCTGGCAGTAGATAGGACTCATCT  300

seq1  TTTCACATGATAATGGATTTTAGAATTACGGGTCTTTACAGTGCTCTGGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACATGATAATGGATTTTAGAATTACGGGTCTTTACAGTGCTCTGGG  350

seq1  TCTCGCAGTGAGTAGGAAAGTAGGAAGCATTCTTTTCTGTATTACACAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCGCAGTGAGTAGGAAAGTAGGAAGCATTCTTTTCTGTATTACACAGA  400

seq1  AGGAGGTTACATATCACAGCCACGCTTGACACAAGCTGTATTGTGCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTACATATCACAGCCACGCTTGACACAAGCTGTATTGTGCTCTT  450

seq1  GTGCAAGGACCTTGTCAGGTTATTTAGCACAGTTTCCTCAGCCCACTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGGACCTTGTCAGGTTATTTAGCACAGTTTCCTCAGCCCACTGTA  500

seq1  CAACTCTTTGACATTTAGTAGAGTTTTAATATCTGATGAATGAAGCAGAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTCTTTGACATTTAGTAGAGTTTTAATATCTGATGAATGAAGCAGAG  550

seq1  AAAAAGCATCTTTTCAATAAAGTTGGAATGGAAAATTCTATTCTTAGCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAGCATCTTTTCAATAAAGTTGGAATGGAAAATTCTATTCTTAGCAC  600

seq1  ATTGGGTGTCTGGGCCTCTCTCACTGAGGCTGAATCACAGGCTGTGGGTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGGTGTCTGGGCCTCTCTCACTGAGGCTGAATCACAGGCTGTGGGTT  650

seq1  GCTGTCATAGGAGGTGTATTTATGTGAAGCAACAGCCCTAGCGGGAACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTCATAGGAGGTGTATTTATGTGAAGCAACAGCCCTAGCGGGAACAG  700

seq1  CAAACATGAATGTGGAGGGGCAGGTGCTAAGAGCTATACTGCAGCAGGCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACATGAATGTGGAGGGGCAGGTGCTAAGAGCTATACTGCAGCAGGCT  750

seq1  CCTAAAGAAAAGAACAAGCTTGAGGCTAGGGATGTAGCTTAGTTAGAACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAGAAAAGAACAAGCTTGAGGCTAGGGATGTAGCTTAGTTAGAACA  800

seq1  TTCGCATAGCATGTGCAAGGCTGTGGGTTCCATCTTCAGCACCAGAGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGCATAGCATGTGCAAGGCTGTGGGTTCCATCTTCAGCACCAGAGGGA  850

seq1  AGAAAAAAAAAAAAAAAAGTAAGAAAGAACAAACCAAACGGAAGTCTGCA  900
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  AGAAAAAAAAAAAAAAAAGTAAGAAAGAAC-AACCAAACGGAAGTCTGCA  899

seq1  GCTCTTGGCAGCCACAGT-CACCAGGGGTCCTTTGAGTTCTAACTGAATC  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  GCTCTTGGCAGCCACAGTCCACCAGGGGTCCTTTGAGTTCTAACTGAATC  949

seq1  AGTGTTT-GTGGCTTGGAGATTGTTTGAGGGACCAGAAGCTAAAACAGGC  998
      ||||||| ||||||||||   |||||||||||||||||||||||||||||
seq2  AGTGTTTGGTGGCTTGGAAGATGTTTGAGGGACCAGAAGCTAAAACAGGC  999

seq1  TATCTGTGAGCCAGGAACACATTACT-GTGTGGGCAGGAGGAAGTCATGT  1047
      ||||||||||||||| |||||||||| |||||| ||||||| ||||||| 
seq2  TATCTGTGAGCCAGG-ACACATTACTGGTGTGGACAGGAGG-AGTCATG-  1046

seq1  TCAAGTCTG-TCA-CAG-TCTAGAGCTGGTGGCCACTTTCCTGCCTTACA  1094
      || |||||| ||| ||| ||||||||||   |||||||||||||  ||||
seq2  TCCAGTCTGTTCACCAGTTCTAGAGCTG--TGCCACTTTCCTGC--TACA  1092

seq1  TAGACA-TCTCACAGCACCGGGTTCA-CCAATACCCCGAGCTTCTAGC  1140
      |||||| ||||| |||||| |||||| |||||| ||||||| ||||||
seq2  TAGACATTCTCA-AGCACC-GGTTCACCCAATA-CCCGAGCCTCTAGC  1137

seq1: chr4_122946124_122947152
seq2: B6Ng01-216J15.g_64_1109 (reverse)

seq1  CCACAACTAGAAACAGGTATTTTTCA-GTAAAAAAAGCAACCCCACAATC  49
      |||||||  |||   ||||||||||| |||||||||||||||||||||||
seq2  CCACAACATGAACAGGGTATTTTTCAGGTAAAAAAAGCAACCCCACAATC  50

seq1  TCAGGG-TTCACAGTGTGATCAACTA-TCCGG--CAGCAGTGATTGATCC  95
      |||||| ||||||||||||||||||| |||||   |||||||||||||||
seq2  TCAGGGTTTCACAGTGTGATCAACTATTCCGGGCAAGCAGTGATTGATCC  100

seq1  ACGCATA-TTTCCCTGCTGCTGC-TGGGTTTG--GGGTTGTGGGGGCC--  139
      ||||||| ||||||||||||||| | ||||||  || |||||||||||  
seq2  ACGCATATTTTCCCTGCTGCTGCATAGGTTTGGAGGTTTGTGGGGGCCCA  150

seq1  AGCCTGAGATGG-AAAGTTCTGGAAATGAAAATCCC--AGTGCATC-AAC  185
      |||  ||||||| |||||||||||| ||||||||||   ||||||| |||
seq2  AGCTCGAGATGGAAAAGTTCTGGAATTGAAAATCCCCAGGTGCATCAAAC  200

seq1  AGCATCCACAGTGGAAGGAGACCAGAGTGGCAGTGCTATCTCCTGGTAGC  235
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATCCACAGTGGAAGGAGACCAGAGTGGCAGTGCTATCTCCTGGTAGC  250

seq1  CCTGTGAGTTGCAGGATAGAGTCTGTTCTTGCAAAAGTTACATAAATACT  285
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGTTGCAGGATAGAGTCTGTTCTTGCAAAAGTTACATAAATACT  300

seq1  AGGAGGATTTAAGGGGGAGGGGTCT-AAACAGTTAAATTTAAGGAGGTTT  334
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  AGGAGGATTTAAGGGGGAGGGGTCTAAAACAGTTAAATTTAAGGAGGTTT  350

seq1  CCAAC-TTTGCTTGCTTTCGACTGGTCTGAAACTATGCTGCTAAGAATGA  383
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACTTTTGCTTGCTTTCGACTGGTCTGAAACTATGCTGCTAAGAATGA  400

seq1  CCTCTATCAGGGTGAAAACACAAGGCTTACCTCCGTGGAGATAAAATATG  433
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTATCAGGGTGAAAACACAAGGCTTACCTCCGTGGAGATAAAATATG  450

seq1  GCTTATTCTGGAGCCAGATATCTTGTTGTATCTCAGAAGGAGCATGAAAA  483
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTATTCTGGAGCCAGATATCTTGTTGTATCTCAGAAGGAGCATGAAAA  500

seq1  TGGCTTAGAACATCTGGGGGACTAGACCTTATAATGTTGTACCCCTGAAG  533
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCTTAGAACATCTGGGGGACTAGACCTTATAATGTTGTACCCCTGAAG  550

seq1  ACCCATGTGTGACGTTCCATCTGACCCAGGAAAGGGTACAGATAAGTCTA  583
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATGTGTGACGTTCCATCTGACCCAGGAAAGGGTACAGATAAGTCTA  600

seq1  GGGGCTTTTTACCTTTGTTACCTGTGACATTTACAGCTGGGCGTGGTGGC  633
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTTTTACCTTTGTTACCTGTGACATTTACAGCTGGGCGTGGTGGC  650

seq1  ACACGTCTTTAATCCCAACACTTGGGAGGCAGAGGCAGGCAGATTTCTGA  683
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACGTCTTTAATCCCAACACTTGGGAGGCAGAGGCAGGCAGATTTCTGA  700

seq1  GTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  733
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCGAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTA  750

seq1  CACAGAGAAACCCTGTCTCATAAAAACAAAAACAAAAAAACAAAACAAAA  783
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACAGAGAAACCCTGTCTCATAAAAACAAAAACAAAAAAACAAAACAAAA  800

seq1  CAAAAAACCTGTGGCACTTACCAAACACTAAGCAGTTCTCTGGCCAGAAA  833
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAAAACCTGTGGCACTTACCAAACACTAAGCAGTTCTCTGGCCAGAAA  850

seq1  AAAAAAAAAAGCAAAGGAACTAAAGGTGCCTTGTAGGCTAGGTCAGTGAA  883
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAGCAAAGGAACTAAAGGTGCCTTGTAGGCTAGGTCAGTGAA  900

seq1  GAATTGGGCCATAGTGCTCTACGGTGTGAGCCTCCACAGATGTCAGCAGG  933
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGGGCCATAGTGCTCTACGGTGTGAGCCTCCACAGATGTCAGCAGG  950

seq1  GAGGGATGGAATCATAACTCCACGTGATCAGCTTTAAGCAGCTTGAGAAG  983
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGATGGAATCATAACTCCACGTGATCAGCTTTAAGCAGCTTGAGAAG  1000

seq1  TTCTCCTAAATTTGTAGGGAGCACCACTCAGGTCAAACTGGAATTC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCCTAAATTTGTAGGGAGCACCACTCAGGTCAAACTGGAATTC  1046