BAC Information

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BAC

Clone NameB6Ng01-216N17
Chromosome4 (Build37)
Map Location 104,309,867 - 104,403,600
singlet/doubletdoublet
Overlap geneDab1
Upstream geneEG665460, LOC622315
Downstream geneC8b, C8a, 1700024P16Rik, Prkaa2, LOC100039513, Ppap2b, LOC433742, LOC665518, LOC434381
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-216N17.bB6Ng01-216N17.g
ACCGA033437GA033438
length1,204852
definitionB6Ng01-216N17.b B6Ng01-216N17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,309,867 - 104,311,052)(104,402,752 - 104,403,600)
sequence
gaattcaccctaggagagaatacatttgaattctttgaccattctcactc
cctttgcattggtaacaaagggtataagattgcaaagagaagcctagact
caaggctgcactggtctaggcaggtccaagagcaggctttcagacccaac
gtatagttggcacatcctaacacggaacacaagctcatagtccaaatcca
tcatgatacctgtgtttgtaaaagtgaaaaataagcatttacattttaaa
ctaaaagaataatatgtataaattatttcatgaacagcaaattcccatgc
ccacaagtatggacatattacaacatgatcacacctgttcatttacatat
ggtctgtgactatagctgacgtcttctgcagaggcagtatgttcacaaag
ctgaaagcatttaacatctggccctgcacagaaaaagtttgccaaccctg
atctagaacttttaaagttaatattatttatttgtattccagcatcttca
tctaagaaagatagtcagtggttgttccatcccatggcaaacgtgcagat
caagtatgacagtgaaagagctcagcataatgtctacacatcacagacac
aacatacgtggtaatatatgaccatacaatttgaaatgccaggctttgga
gtttcctcatctctgaaattcagatagtacctaccttataggattttttt
tttaattaaggaacacacctgcaagaagcattaatgtaatggccagtgtt
tatgtagcacttacatcacaagtagggaaaccaacataaagaatcagtaa
actgacttacagactctcctcaagtagttagtgatggggctgggtcatgg
aacataccattcttacagccttgtaatcgggcctaaatgactatcacctg
gcctcagtgccaggtctacacccgtcttattccttctctttttaccccca
tagtggtagagtcctcatgcctagagtttgttcacagccaccaattctgc
ctttatactatatactagttactacagtatagtacttatttactattata
cctaggcattttattgtttgtattcaatttaaaatcgtacctgccagatg
gccaatttccctttgtcattcaatttttagatgtgaactcttttgagcct
tggaaacttatcatttgtcctttaacctctttgggcctagcatctcctcc
ctgg

gaattctggtcactggcttagtcccaaggcatggattgaattgagtaggt
gagcagcattgccattggtcaggttccctgttatgctgtttcagagctta
gcaaaagaaatctggtactttatcagacaatgatgattgcaaaagttgtg
ctcatctttaactccacaaacactatttccagctcctttaccattcacaa
tatggaatgaggctaaccccggctatgctctttttcatcattatgcccct
gatacaaatgactagatgtggtattgtgcacttccttcagatatcaggag
ccagagcccagagggtgatgggggatcacttatatcaacaaaggtatggg
tatgagctatgggatgtggcaaagatatgtctaacactatgggctctttt
ctattccagttgtttgtttttatgttttgcttttgtttttgttgttatga
ctcatctctcagtcccattttgaagggctgctgtcagggaagaggatgag
aaaactgactttactcatttcctttcaaatgaaagattgtgtatttcttg
ttttatgagttggtttccatgcaaactagctacactactaggtttaatgc
taaagatgcctcactgagtgggtaatattagcttcactgagttctgaagt
gtgttttgaagtggcttattgcttacaaaatgctgagcatccttgagtct
cttaacagtatactgatcaccgttccccagcaagaggttatttatgcaag
cgtctttagttgtaacagggattttacaggcagggtgcttcagtatttcc
aagcctgtattctctcaggtggatggggtggggtcatttccccacttgga
ac
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_104309867_104311052
seq2: B6Ng01-216N17.b_45_1248

seq1  GAATTCACCCTAGGAGAGAATACATTTGAATTCTTTGACCATTCTCACTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCCTAGGAGAGAATACATTTGAATTCTTTGACCATTCTCACTC  50

seq1  CCTTTGCATTGGTAACAAAGGGTATAAGATTGCAAAGAGAAGCCTAGACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTGCATTGGTAACAAAGGGTATAAGATTGCAAAGAGAAGCCTAGACT  100

seq1  CAAGGCTGCACTGGTCTAGGCAGGTCCAAGAGCAGGCTTTCAGACCCAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGGCTGCACTGGTCTAGGCAGGTCCAAGAGCAGGCTTTCAGACCCAAC  150

seq1  GTATAGTTGGCACATCCTAACACGGAACACAAGCTCATAGTCCAAATCCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGTTGGCACATCCTAACACGGAACACAAGCTCATAGTCCAAATCCA  200

seq1  TCATGATACCTGTGTTTGTAAAAGTGAAAAATAAGCATTTACATTTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATGATACCTGTGTTTGTAAAAGTGAAAAATAAGCATTTACATTTTAAA  250

seq1  CTAAAAGAATAATATGTATAAATTATTTCATGAACAGCAAATTCCCATGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAAAGAATAATATGTATAAATTATTTCATGAACAGCAAATTCCCATGC  300

seq1  CCACAAGTATGGACATATTACAACATGATCACACCTGTTCATTTACATAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGTATGGACATATTACAACATGATCACACCTGTTCATTTACATAT  350

seq1  GGTCTGTGACTATAGCTGACGTCTTCTGCAGAGGCAGTATGTTCACAAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCTGTGACTATAGCTGACGTCTTCTGCAGAGGCAGTATGTTCACAAAG  400

seq1  CTGAAAGCATTTAACATCTGGCCCTGCACAGAAAAAGTTTGCCAACCCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAAGCATTTAACATCTGGCCCTGCACAGAAAAAGTTTGCCAACCCTG  450

seq1  ATCTAGAACTTTTAAAGTTAATATTATTTATTTGTATTCCAGCATCTTCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAGAACTTTTAAAGTTAATATTATTTATTTGTATTCCAGCATCTTCA  500

seq1  TCTAAGAAAGATAGTCAGTGGTTGTTCCATCCCATGGCAAACGTGCAGAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGAAAGATAGTCAGTGGTTGTTCCATCCCATGGCAAACGTGCAGAT  550

seq1  CAAGTATGACAGTGAAAGAGCTCAGCATAATGTCTACACATCACAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATGACAGTGAAAGAGCTCAGCATAATGTCTACACATCACAGACAC  600

seq1  AACATACGTGGTAATATATGACCATACAATTTGAAATGCCAGGCTTTGGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATACGTGGTAATATATGACCATACAATTTGAAATGCCAGGCTTTGGA  650

seq1  GTTTCCTCATCTCTGAAATTCAGATAGTACCTACCTTATAGGA-TTTTTT  699
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  GTTTCCTCATCTCTGAAATTCAGATAGTACCTACCTTATAGGATTTTTTT  700

seq1  TTTAATTAAGGAACACACCTGCAAGAAGCATTAATGTAATGGCCAGTGTT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAAGGAACACACCTGCAAGAAGCATTAATGTAATGGCCAGTGTT  750

seq1  TATGTAGCACTTACATCACAAGTAGGGAAACCAACATAAAGAATCAGTAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAGCACTTACATCACAAGTAGGGAAACCAACATAAAGAATCAGTAA  800

seq1  ACTGACTTACAGACTCTCCTCAAGTAGTTAGTGATGGGGCTGGGTCATGG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGACTTACAGACTCTCCTCAAGTAGTTAGTGATGGGGCTGGGTCATGG  850

seq1  AACATACCATTCTTACAGCC-TGTAATCGGGCCTAAATGACTATCACCTG  898
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AACATACCATTCTTACAGCCTTGTAATCGGGCCTAAATGACTATCACCTG  900

seq1  GCCTCAGTGCCAGGTCTACACCCGTTCTATTCCTTCTCTTTTTACCCCCA  948
      |||||||||||||||||||||||||  |||||||||||||||||||||||
seq2  GCCTCAGTGCCAGGTCTACACCCGTCTTATTCCTTCTCTTTTTACCCCCA  950

seq1  TAGTGGTAGAGTCCTCATGCCTAGAGTT--GTCACAGCCACC-ATTCTGC  995
      ||||||||||||||||||||||||||||   ||||||||||| |||||||
seq2  TAGTGGTAGAGTCCTCATGCCTAGAGTTTGTTCACAGCCACCAATTCTGC  1000

seq1  C-TTATACTATATACTAG-TACTACAGTATAGTAC-TATATACTA-TATA  1041
      | |||||||||||||||| |||||||||||||||| ||| ||||| ||||
seq2  CTTTATACTATATACTAGTTACTACAGTATAGTACTTATTTACTATTATA  1050

seq1  ACTA-GCATTTTA-TGTTTGTATTC-ATTTAAAATCGTA-CTG-CAGATG  1086
       ||| |||||||| ||||||||||| ||||||||||||| ||| ||||||
seq2  CCTAGGCATTTTATTGTTTGTATTCAATTTAAAATCGTACCTGCCAGATG  1100

seq1  G-CAATGTCCCTTTGTCAT--CATTTCTAGAATGTG-ACTCTTTTGAG-C  1131
      | |||| ||||||||||||   |||| ||| ||||| ||||||||||| |
seq2  GCCAATTTCCCTTTGTCATTCAATTTTTAG-ATGTGAACTCTTTTGAGCC  1149

seq1  TTGGAAACCTTATCATTTGTTCTTCTTACCTTCTTTTGCCTAGCA--TCC  1179
      ||||||| |||||||||||| ||| | ||||  ||  ||||||||  |||
seq2  TTGGAAA-CTTATCATTTGTCCTT-TAACCTCTTTGGGCCTAGCATCTCC  1197

seq1  TCCCTGG  1186
      |||||||
seq2  TCCCTGG  1204


seq1: chr4_104402752_104403600
seq2: B6Ng01-216N17.g_68_919 (reverse)

seq1  GTTCCACTGTGGGGAAATGACCCCA-CCCATCCACCTTGAGAGAATACAG  49
      ||||||  ||||||||||||||||| |||||||||| |||||||||||||
seq2  GTTCCA-AGTGGGGAAATGACCCCACCCCATCCACC-TGAGAGAATACAG  48

seq1  GCTTGG-AATACTGAAGCACCCTGCCTGT-AAATCCTTGTTACAACT-AA  96
      |||||| |||||||||||||||||||||| |||||| |||||||||| ||
seq2  GCTTGGAAATACTGAAGCACCCTGCCTGTAAAATCCCTGTTACAACTAAA  98

seq1  GACGCTTGCATAAATAACCTCTTGCTGGGGAACGGTGATCAGTATACTGT  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACGCTTGCATAAATAACCTCTTGCTGGGGAACGGTGATCAGTATACTGT  148

seq1  TAAGAGACTCAAGGATGCTCAGCATTTTGTAAGCAATAAGCCACTTC-AA  195
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAAGAGACTCAAGGATGCTCAGCATTTTGTAAGCAATAAGCCACTTCAAA  198

seq1  ACACACTTCAGAACTCAGTGAAGCTAATATTACCCACTCAGTGAGGCATC  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACTTCAGAACTCAGTGAAGCTAATATTACCCACTCAGTGAGGCATC  248

seq1  TTTAGCATTAAACCTAGTAGTGTAGCTAGTTTGCATGGAAACCAACTCAT  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGCATTAAACCTAGTAGTGTAGCTAGTTTGCATGGAAACCAACTCAT  298

seq1  AAAACAAGAAATACACAATCTTTCATTTGAAAGGAAATGAGTAAAGTCAG  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAACAAGAAATACACAATCTTTCATTTGAAAGGAAATGAGTAAAGTCAG  348

seq1  TTTTCTCATCCTCTTCCCTGACAGCAGCCCTTCAAAATGGGACTGAGAGA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTCATCCTCTTCCCTGACAGCAGCCCTTCAAAATGGGACTGAGAGA  398

seq1  TGAGTCATAACAACAAAAACAAAAGCAAAACATAAAAACAAACAACTGGA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTCATAACAACAAAAACAAAAGCAAAACATAAAAACAAACAACTGGA  448

seq1  ATAGAAAAGAGCCCATAGTGTTAGACATATCTTTGCCACATCCCATAGCT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAAAAGAGCCCATAGTGTTAGACATATCTTTGCCACATCCCATAGCT  498

seq1  CATACCCATACCTTTGTTGATATAAGTGATCCCCCATCACCCTCTGGGCT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACCCATACCTTTGTTGATATAAGTGATCCCCCATCACCCTCTGGGCT  548

seq1  CTGGCTCCTGATATCTGAAGGAAGTGCACAATACCACATCTAGTCATTTG  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCCTGATATCTGAAGGAAGTGCACAATACCACATCTAGTCATTTG  598

seq1  TATCAGGGGCATAATGATGAAAAAGAGCATAGCCGGGGTTAGCCTCATTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCAGGGGCATAATGATGAAAAAGAGCATAGCCGGGGTTAGCCTCATTC  648

seq1  CATATTGTGAATGGTAAAGGAGCTGGAAATAGTGTTTGTGGAGTTAAAGA  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGTGAATGGTAAAGGAGCTGGAAATAGTGTTTGTGGAGTTAAAGA  698

seq1  TGAGCACAACTTTTGCAATCATCATTGTCTGATAAAGTACCAGATTTCTT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCACAACTTTTGCAATCATCATTGTCTGATAAAGTACCAGATTTCTT  748

seq1  TTGCTAAGCTCTGAAACAGCATAACAGGGAACCTGACCAATGGCAATGCT  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTAAGCTCTGAAACAGCATAACAGGGAACCTGACCAATGGCAATGCT  798

seq1  GCTCACCTACTCAATTCAATCCATGCCTTGGGACTAAGCCAGTGACCAGA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCACCTACTCAATTCAATCCATGCCTTGGGACTAAGCCAGTGACCAGA  848

seq1  ATTC  849
      ||||
seq2  ATTC  852


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