BAC Information

Click to search

BAC

Clone NameB6Ng01-217A18
Chromosome4 (Build37)
Map Location 107,045,206 - 107,168,938
singlet/doubletdoublet
Overlap geneTmem48, Glis1
Upstream geneUsp24, LOC100039616, Pcsk9, Bsnd, Tmem61, Dhcr24, BC055111, Ttc22, Pars2, Ttc4, Gm1027, BC026682, Acot11, Ssbp3, Mrpl37, 2810410C14Rik, Cdcp2, 2210012G02Rik, Tmem59, LOC546840, Lrrc42, 2900042B11Rik, Dio1, Yipf1, LOC652920
Downstream geneDmrtb1, LOC100039889, LOC433743, 4933424M12Rik, 4930430J20Rik, Magoh, 0610037L13Rik, Cpt2, Slc1a7, Podn, Scp2, Echdc2, Zyg11a, Zyg11b, LOC100040252, 2010305A19Rik, LOC545667, Gpx7, LOC665728, Zcchc11, LOC100040110
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217A18.bB6Ng01-217A18.g
ACCGA033573GA033574
length961882
definitionB6Ng01-217A18.b B6Ng01-217A18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,045,206 - 107,046,151)(107,168,066 - 107,168,938)
sequence
gaattcactctgtagaccaggctggcttcaaagtcagtgaaacttgactt
tgaataaataatactcaaattatttatttgagtttgcctctgcctcctga
gtgctgggattaaaggcgttcactcttgtttttaaagcctcactggtcac
ttggctcgttctgtaggagtaggccctatgtgccgtgcactgggcaggtc
tgagggagcacagagggccatctttgacccagtgtggaggctgcctagag
gagctgatggctcatcagactttgaaggaggagttgtgttaggcagacaa
agaagagaaatgatttttctaggaagatggagcttgaaagaacattgaga
gacatggcagggtttgccacgttaggaagttagtcacataattggctttg
gggacatttttgatggggaagaggaggtgttagccacatctttcctaaaa
tgccaagccccctgttgcccacactgccatggcttttccttgggtgacct
aaaggaaggttattacctgctgtgtcagggagcccagggctgccggggct
caggcacaaacgccctttaccctttcccacagctgtccaccacgccactt
ccaaagagctctttggattgttggagaggtcctaaaactacctgtgtagg
agcgagtatggaggctcagtgggttacagagaaccagctctaacctctgc
acatacctcactgcaaacaaatgactggatgtaatgaaaatgcctattca
gagttgggtgtagtggcgcacatgtccgtgatagcgctataaacactttg
atatttcatttattgttaagtttcgtccttgttgcttatttttcacagat
gggactctttaatgaatcttcaaatgttgaaattaaaggcaatttgggag
ctatccttctaaaattatttattttatgttacttaagaaaaaacgtcaga
gttgggcattt
gaattcccaaatacaatgctttcttttgtgtggctgtggtcatgatgttt
tgccacagcaatagaaaagtaactaagatgcctgccaagcactttattaa
ccagccaagcattgtttgaggacaagtcggcaggacagggtggatgctgc
aagatgaggtcaaagggcacaatgaaaggcatggttactgtcaccactgc
aagcaagtagttacaaaccactgcagtgtggctcacactgcaagggtttg
tgagtgactagactcggccccagagaagctaagatggaggagggaaaact
aaacaagacattacagggaacttacccaagtgagcatgatgctggcccgg
ccaagtcatacccctgccctcattgtcaaggtagagccaacaaatcttca
gggtgagtcagatgtaaggcatagaagagcaaagacaaggccatgaggga
atagcaggaacagagagacagggctagggcgcctggcagcttgattagga
atgagttaggctagagatatttgctagagaagtctgtagttcagaggtga
ggccaaaggaggaaaaaacaaattggcgattaagcaaattatatgtaaag
atgagtgtatgacaaagatccttaggaggggccttgtagacaaggacggc
agccgtgcagcctgtgaccctgtgaaaaagaggctgaagagtaggcagtg
ggggaaagagatgctacccacggagagggaaacgatgtgtcctgaacaca
aaccaatttagttgtgtcaagagccctgggtgtgatcaacttgagcctct
gctggtgagaagttcgtgtacgattgaggcccttcatttctggtgacacg
ctcaaggacaggagcctggccagaaccaactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_107045206_107046151
seq2: B6Ng01-217A18.b_48_1007

seq1  GAATTCACTCTGTAGACCAGGCTGGCTTCAAAGTCAGTGAAACTTGACTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGACCAGGCTGGCTTCAAAGTCAGTGAAACTTGACTT  50

seq1  TGAATAAATAATACTCAAATTATTTATTTGAGTTTGCCTCTGCCTCCTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATAAATAATACTCAAATTATTTATTTGAGTTTGCCTCTGCCTCCTGA  100

seq1  GTGCTGGGATTAAAGGCGTTCACTCTTGTTTTTAAAGCCTCACTGGTCAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCTGGGATTAAAGGCGTTCACTCTTGTTTTTAAAGCCTCACTGGTCAC  150

seq1  TTGGCTCGTTCTGTAGGAGTAGGCCCTATGTGCCGTGCACTGGGCAGGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCTCGTTCTGTAGGAGTAGGCCCTATGTGCCGTGCACTGGGCAGGTC  200

seq1  TGAGGGAGCACAGAGGGCCATCTTTGACCCAGTGTGGAGGCTGCCTAGAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGGAGCACAGAGGGCCATCTTTGACCCAGTGTGGAGGCTGCCTAGAG  250

seq1  GAGCTGATGGCTCATCAGACTTTGAAGGAGGAGTTGTGTTAGGCAGACAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTGATGGCTCATCAGACTTTGAAGGAGGAGTTGTGTTAGGCAGACAA  300

seq1  AGAAGAGAAATGATTTTTCTAGGAAGATGGAGCTTGAAAGAACATTGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGAAATGATTTTTCTAGGAAGATGGAGCTTGAAAGAACATTGAGA  350

seq1  GACATGGCAGGGTTTGCCACGTTAGGAAGTTAGTCACATAATTGGCTTTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACATGGCAGGGTTTGCCACGTTAGGAAGTTAGTCACATAATTGGCTTTG  400

seq1  GGGACATTTTTGATGGGGAAGAGGAGGTGTTAGCCACATCTTTCCTAAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGACATTTTTGATGGGGAAGAGGAGGTGTTAGCCACATCTTTCCTAAAA  450

seq1  TGCCAAGCCCCCTGTTGCCCACACTGCCATGGCTTTTCCTTGGGTGACCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCAAGCCCCCTGTTGCCCACACTGCCATGGCTTTTCCTTGGGTGACCT  500

seq1  AAAGGAAGGTTATTACCTGCTGTGTCAGGGAGCCCAGGGCTGCCGGGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGGAAGGTTATTACCTGCTGTGTCAGGGAGCCCAGGGCTGCCGGGGCT  550

seq1  CAGGCACAAACGCCCTTTACCCTTTCCCACAGCTGTCCACCACGCCACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCACAAACGCCCTTTACCCTTTCCCACAGCTGTCCACCACGCCACTT  600

seq1  CCAAAGAGCTCTTTGGATTGTTGGAGAGGTCCTAAAACTACCTGTGTAGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAGAGCTCTTTGGATTGTTGGAGAGGTCCTAAAACTACCTGTGTAGG  650

seq1  AGCGAGTATGGAGGCTCAGTGGGTTACAGAGAACCAGCTCTAACCTCTGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGAGTATGGAGGCTCAGTGGGTTACAGAGAACCAGCTCTAACCTCTGC  700

seq1  ACATACCTCACTGCAAACAAATGACTGGATGTAATGAAAATGCCTATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACCTCACTGCAAACAAATGACTGGATGTAATGAAAATGCCTATTCA  750

seq1  GAGTTGGGTGTAGTGGCGCACATGTCCGTGATAGCGCTATAAACAC-TTG  799
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GAGTTGGGTGTAGTGGCGCACATGTCCGTGATAGCGCTATAAACACTTTG  800

seq1  ATA-TTCA-TTATTG-TAAGTTTCGTCTTTGTGGCTTATTTTTCACAGAT  846
      ||| |||| |||||| ||||||||||| |||| |||||||||||||||||
seq2  ATATTTCATTTATTGTTAAGTTTCGTCCTTGTTGCTTATTTTTCACAGAT  850

seq1  -GGACTC-TTAATGAATC-TCAAATGTTGAAA-TAAAGGCAATTT-GGAG  891
       |||||| |||||||||| ||||||||||||| |||||||||||| ||||
seq2  GGGACTCTTTAATGAATCTTCAAATGTTGAAATTAAAGGCAATTTGGGAG  900

seq1  CTAT-CTTCT-AAATTATTTATTTTATGTTACTTA--GAAAAACGTCAGA  937
      |||| ||||| ||||||||||||||||||||||||   ||||||||||||
seq2  CTATCCTTCTAAAATTATTTATTTTATGTTACTTAAGAAAAAACGTCAGA  950

seq1  GTT-GGCATT  946
      ||| ||||||
seq2  GTTGGGCATT  960

seq1: chr4_107168066_107168938
seq2: B6Ng01-217A18.g_68_949 (reverse)

seq1  AAGTT-GTTCT-GCCAGGCTCCTGTCC-TGAGCGTGTCACCAG-AATGAA  46
      ||||| ||||| ||||||||||||||| ||||||||||||||| ||||||
seq2  AAGTTGGTTCTGGCCAGGCTCCTGTCCTTGAGCGTGTCACCAGAAATGAA  50

seq1  GGGCCCTCATCGTACACG-ACCTCTCACCAGCAGAGGCTC-AGTTGATCA  94
      |||||   |||||||||| || |||||||||||||||||| |||||||||
seq2  GGGCCTCAATCGTACACGAACTTCTCACCAGCAGAGGCTCAAGTTGATCA  100

seq1  CACCCA-GGCTCTTGACAC-ACTAATTTGGTTTGTGTTCAGGACACATCG  142
      |||||| |||||||||||| ||||| ||||||||||||||||||||||||
seq2  CACCCAGGGCTCTTGACACAACTAAATTGGTTTGTGTTCAGGACACATCG  150

seq1  TTTCCCTCTCCGT-GGTAGCATCTCTTTCCCCCACTGCCTACTCTTCAGC  191
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTCTCCGTGGGTAGCATCTCTTTCCCCCACTGCCTACTCTTCAGC  200

seq1  CTCTTTTTCACAGGGTCACAGGCTGCACGGCTGCCGTCCTTGTCTACAAG  241
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTTTTCACAGGGTCACAGGCTGCACGGCTGCCGTCCTTGTCTACAAG  250

seq1  GCCCCTCCTAAGGATCTTTGTCATACACTCATCTTTACATATAATTTGCT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCCTCCTAAGGATCTTTGTCATACACTCATCTTTACATATAATTTGCT  300

seq1  TAATCGCCAATTTGTTTTTTCCTCCTTTGGCCTCACCTCTGAACTACAGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCGCCAATTTGTTTTTTCCTCCTTTGGCCTCACCTCTGAACTACAGA  350

seq1  CTTCTCTAGCAAATATCTCTAGCCTAACTCATTCCTAATCAAGCTGCCAG  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTCTAGCAAATATCTCTAGCCTAACTCATTCCTAATCAAGCTGCCAG  400

seq1  GCGCCCTAGCCCTGTCTCTCTGTTCCTGCTATTCCCTCATGGCCTTGTCT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGCCCTAGCCCTGTCTCTCTGTTCCTGCTATTCCCTCATGGCCTTGTCT  450

seq1  TTGCTCTTCTATGCCTTACATCTGACTCACCCTGAAGATTTGTTGGCTCT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCTCTTCTATGCCTTACATCTGACTCACCCTGAAGATTTGTTGGCTCT  500

seq1  ACCTTGACAATGAGGGCAGGGGTATGACTTGGCCGGGCCAGCATCATGCT  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTTGACAATGAGGGCAGGGGTATGACTTGGCCGGGCCAGCATCATGCT  550

seq1  CACTTGGGTAAGTTCCCTGTAATGTCTTGTTTAGTTTTCCCTCCTCCATC  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTGGGTAAGTTCCCTGTAATGTCTTGTTTAGTTTTCCCTCCTCCATC  600

seq1  TTAGCTTCTCTGGGGCCGAGTCTAGTCACTCACAAACCCTTGCAGTGTGA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTTCTCTGGGGCCGAGTCTAGTCACTCACAAACCCTTGCAGTGTGA  650

seq1  GCCACACTGCAGTGGTTTGTAACTACTTGCTTGCAGTGGTGACAGTAACC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACACTGCAGTGGTTTGTAACTACTTGCTTGCAGTGGTGACAGTAACC  700

seq1  ATGCCTTTCATTGTGCCCTTTGACCTCATCTTGCAGCATCCACCCTGTCC  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCTTTCATTGTGCCCTTTGACCTCATCTTGCAGCATCCACCCTGTCC  750

seq1  TGCCGACTTGTCCTCAAACAATGCTTGGCTGGTTAATAAAGTGCTTGGCA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCGACTTGTCCTCAAACAATGCTTGGCTGGTTAATAAAGTGCTTGGCA  800

seq1  GGCATCTTAGTTACTTTTCTATTGCTGTGGCAAAACATCATGACCACAGC  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCTTAGTTACTTTTCTATTGCTGTGGCAAAACATCATGACCACAGC  850

seq1  CACACAAAAGAAAGCATTGTATTTGGGAATTC  873
      ||||||||||||||||||||||||||||||||
seq2  CACACAAAAGAAAGCATTGTATTTGGGAATTC  882