BAC Information

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BAC

Clone NameB6Ng01-217E20
Chromosome4 (Build37)
Map Location 143,951,744 - 143,952,915
singlet/doubletsinglet
Overlap geneOTTMUSG00000010537
Upstream geneLrrc38, LOC621961, Pramel1, 4732496O08Rik, Oog4, LOC666015, LOC626700, OTTMUSG00000010207, LOC100040854, LOC100040861, BC080695, LOC666049, LOC279185, LOC277668, LOC100040924, OTTMUSG00000010333, LOC277666, OTTMUSG00000010009, OTTMUSG00000010328, OTTMUSG00000010433, LOC195555, LOC194224, LOC626889, LOC329984, LOC626922, LOC626943, LOC100041127, LOC436146, Pramel4, LOC100041077, LOC100041144, Oog3, Oog2, C87977, Pramel5, LOC666150, LOC626995
Downstream geneEG627009, Pramef12, D530049N12Rik, 1700012P22Rik, Aadacl3, 9430007A20Rik, LOC100041232, LOC666194, LOC627085, LOC666215, LOC435815, Gm436, LOC546849, Gm438, LOC666242, LOC676844, Dhrs3, Vps13d, Tnfrsf1b, Tnfrsf8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-217E20.bB6Ng01-217E20.g
ACCGA033754GA033755
length1,165819
definitionB6Ng01-217E20.b B6Ng01-217E20.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcttcctccttccttacccgagcaattcattcatgtggccagtgag
aaagtagaggccagccagggcgagatgctggagactgttgagtttggaga
actgagaaatgaacttggtgacgctcttctcctgtatgtctgttgacgta
tgtagaaaagtgaagagtttctcgtggactagtgttagatggagtttacg
aagatttttcatctgaccaaggcaaggtgcaaagcatgccagtgtggaca
gagtccagcctgtattcaattccaactcctcaatgcaatatggttggaaa
atctgcaagatcttcctgacagtgtgcatagccaatcccctaatctgcaa
tttcacacagcacaggttcagggaagctcttctctcctgtgcccactgca
agaagtaagtttgatgttcctctagatcaaactgaaggtgtaggtcagta
accacctttaaacgtctcctcagtgcatatctatgagggtgtgttgcttt
ctgcttttgacacactgtctctgctgagctgtcttcatcctctggtccag
ctgaaacatcccagaagtgatggtgcacatttctcaggtccagcacttga
agcttccgcttgctgtgggtgaaacagatagaaatgtaggaagatacaaa
agaccaaaaacattagccagctttttctaggcatctttcttgtcagctgt
tcactgttctgctctgtctcccacagatttaagtttccagtactgggtct
ccacatagcaactcaagccttctgggcaagggctctctgccttaactgat
tctggagatctgccctgcttcctccatttattactctgaacttccactga
tcctatatctattactcaggagagacacaggaccgtgtagctacatgggc
tctaagctgtacttcataattaatggatatttgttaccaggattcaacac
tgtccaggacactgtagcttcttcagatgataccacataacctctgttct
acctttgacctctttcccatgagcccagatgtcttctccttaatacttaa
ttgtagccacttgtcattacatattctgtttacctgggtgaagttctgtc
cagcttgcatgtctaacatcaggcacagccttggcatatactgtcatgtt
caagatgttctatca
gaattctctcctgaggaataccgaatggcagagaagcacttgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggagtgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaactggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaacaggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacctagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctaggcaa
atggatggacctggagggcatcatcctgagtgaggtaacacattcacaaa
gaaactcacacaatatgtattcactgataagtggatattagccccaaacc
taggatacccaagatataagatataattttgcctaaaacacatgaaactc
aagaagaaatgaagacttgaagtggggacacttatgcctctcctttagat
ttgggaacaaaacacccattggaaggagttacagagacaaagttttggag
ctgagatgaaaggatggaccatgtagagactgccatatccaggggatcca
ccccataaatcagcattca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_143951744_143952915
seq2: B6Ng01-217E20.b_44_1208 (reverse)

seq1  TGAT-GAACATCCCTGACATGACAGTAT-TGC--AAGCTGTGCTGGATGG  46
      |||| |||||||    |||||||||||| |||  | |||||||  |||| 
seq2  TGATAGAACATCTTGAACATGACAGTATATGCCAAGGCTGTGCCTGATG-  49

seq1  TGTAGACATGC-AGCT-GACAGGAAATTTTCACCCAAGGTAAACAAGAAT  94
        ||||||||| |||| |||||   |  ||||||| |||||||| |||| 
seq2  -TTAGACATGCAAGCTGGACAG---AACTTCACCC-AGGTAAAC-AGAA-  92

seq1  TATGTAATGACAAGTGGCTTACATTTAAGTA-TAAGGAGAAGGACATCTG  143
      |||||||||||||||||| |||| ||||||| ||||||||| ||||||||
seq2  TATGTAATGACAAGTGGC-TACAATTAAGTATTAAGGAGAA-GACATCTG  140

seq1  GGCTCATGGAAAAAGAGGTCAAAGGTAGAACAGAGGTTTATGTTGGTATC  193
      |||||||||  ||||||||||||||||||||||||| ||||| |||||||
seq2  GGCTCATGG-GAAAGAGGTCAAAGGTAGAACAGAGG-TTATG-TGGTATC  187

seq1  ATCTTGAAG-AGCTACAGTGTCCTGGACAGTTGTTGAATCCTGGTAACAA  242
      ||| ||||| |||||||||||||||||||| |||||||||||||||||||
seq2  ATC-TGAAGAAGCTACAGTGTCCTGGACAG-TGTTGAATCCTGGTAACAA  235

seq1  ATATCCATTAATTATGAAGTACAGCTTAGAGCCCATGTAGCTACACGGTC  292
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCCATTAATTATGAAGTACAGCTTAGAGCCCATGTAGCTACACGGTC  285

seq1  CTGTGTCTCTCCTGAGTAATAGATATAGGATCAGTGGAAGTTCAGAGTAA  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTCTCTCCTGAGTAATAGATATAGGATCAGTGGAAGTTCAGAGTAA  335

seq1  TAAATGGAGGAAGCAGGGCAGATCTCCAGAATCAGTTAAGGCAGAGAGCC  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATGGAGGAAGCAGGGCAGATCTCCAGAATCAGTTAAGGCAGAGAGCC  385

seq1  CTTGCCCAGAAGGCTTGAGTTGCTATGTGGAGACCCAGTACTGGAAACTT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGCCCAGAAGGCTTGAGTTGCTATGTGGAGACCCAGTACTGGAAACTT  435

seq1  AAATCTGTGGGAGACAGAGCAGAACAGTGAACAGCTGACAAGAAAGATGC  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGTGGGAGACAGAGCAGAACAGTGAACAGCTGACAAGAAAGATGC  485

seq1  CTAGAAAAAGCTGGCTAATGTTTTTGGTCTTTTGTATCTTCCTACATTTC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAAAAGCTGGCTAATGTTTTTGGTCTTTTGTATCTTCCTACATTTC  535

seq1  TATCTGTTTCACCCACAGCAAGCGGAAGCTTCAAGTGCTGGACCTGAGAA  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTGTTTCACCCACAGCAAGCGGAAGCTTCAAGTGCTGGACCTGAGAA  585

seq1  ATGTGCACCATCACTTCTGGGATGTTTCAGCTGGACCAGAGGATGAAGAC  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGCACCATCACTTCTGGGATGTTTCAGCTGGACCAGAGGATGAAGAC  635

seq1  AGCTCAGCAGAGACAGTGTGTCAAAAGCAGAAAGCAACACACCCTCATAG  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCAGAGACAGTGTGTCAAAAGCAGAAAGCAACACACCCTCATAG  685

seq1  ATATGCACTGAGGAGACGTTTAAAGGTGGTTACTGACCTACACCTTCAGT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATGCACTGAGGAGACGTTTAAAGGTGGTTACTGACCTACACCTTCAGT  735

seq1  TTGATCTAGAGGAACATCAAACTTACTTCTTGCAGTGGGCACAGGAGAGA  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATCTAGAGGAACATCAAACTTACTTCTTGCAGTGGGCACAGGAGAGA  785

seq1  AGAGCTTCCCTGAACCTGTGCTGTGTGAAATTGCAGATTAGGGGATTGGC  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGCTTCCCTGAACCTGTGCTGTGTGAAATTGCAGATTAGGGGATTGGC  835

seq1  TATGCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTG  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCACACTGTCAGGAAGATCTTGCAGATTTTCCAACCATATTGCATTG  885

seq1  AGGAGTTGGAATTGAATACAGGCTGGACTCTGTCCACACTGGCATGCTTT  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGTTGGAATTGAATACAGGCTGGACTCTGTCCACACTGGCATGCTTT  935

seq1  GCACCTTGCCTTGGTCAGATGAAAAATCTTCGTAAACTCCATCTAACACT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCTTGCCTTGGTCAGATGAAAAATCTTCGTAAACTCCATCTAACACT  985

seq1  AGTCCACGAGAAACTCTTCACTTTTCTACATACGTCAACAGACATACAGG  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCACGAGAAACTCTTCACTTTTCTACATACGTCAACAGACATACAGG  1035

seq1  AGAAGAGCGTCACCAAGTTCATTTCTCAGTTCTCCAAACTCAACAGTCTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGCGTCACCAAGTTCATTTCTCAGTTCTCCAAACTCAACAGTCTC  1085

seq1  CAGCATCTCGCCCTGGCTGGCCTCTACTTTCTCACTGGCCACATGAATGA  1142
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCATCTCGCCCTGGCTGGCCTCTACTTTCTCACTGGCCACATGAATGA  1135

seq1  ATTGCTCGGGTAAGGAAGGAGGAAGAATTC  1172
      ||||||||||||||||||||||||||||||
seq2  ATTGCTCGGGTAAGGAAGGAGGAAGAATTC  1165