BAC Information

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BAC

Clone NameB6Ng01-218D06
Chromosome4 (Build37)
Map Location 93,107,660 - 93,201,281
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC620269, LOC384125, Tusc1
Downstream gene5830433M19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218D06.bB6Ng01-218D06.g
ACCGA034395GA034396
length1,1911,115
definitionB6Ng01-218D06.b B6Ng01-218D06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(93,107,660 - 93,108,860)(93,200,156 - 93,201,281)
sequence
gaattcactcagaacctgtgtaccaattctttccattttcttctggaatg
agaatgtttgctctactcttgtatacattagctctgtactttgatttcac
aagttcacaagtacagaggaattttacttctcagtgaatcatagtagctt
cagccttcccttcccttggtttagatgctatcttctcaggagacttttga
cctggagttgatgctgggatgacttaagattttctaagcagcagcgacag
gaacaaatccttccagatatgtaaaagagaatatacactgatgagatacg
caaacaaaggggacaaaatcttgcagcaaaatgatgataataataaacca
aaaaaaaaaaaaaaaatcccaggcccttaaagaatgaacgcttaacagag
tctgaagagtaagaaatgataagcctgaaaagggacttaaatgtggctag
gaactttcctaatctaagagctagggtgacctcgagctaaaataaatcta
gtaaagctgcaaaaataagttgttgtattgcagtttcataaaactataga
caaaataacaatgaaatcttcagaagaaaagcaataccttacatttaggt
aagaacaacttaaacatgaatagttatccacaaaaatctctgatagctga
agggaaaactcagtatttttaaagaacacacacacacacacacacacaca
cacacacacacacacacacatacactcacacatatacacattaccaggcc
agattctcatacccaataaaatgagcttgaacttctttatctagggtagg
accctacacaaagtgttcgtcttttcacataaacatgtctattgatattt
ccatccttatggtcttatttatgcatccatttttaggagaggctgtttcc
cagcaggattgcaggattccctgctattctagctttgacaatcattctga
gcctttctgagctgtttcctgagtcctagctacagggacgatgatgtaaa
tatatctgttgaagctggcatctcagatctatgatgtgtgcttgagtctg
tgatagggagcttctttgacgaggggtagtgcacttgttgtgggtataaa
gaataagaattaaatgtagtatgaagttttggatcctgcaaattgagtag
ataagatgatttactcattattccgaagggaattagctttt

gaattctccacaggtcagggagccttgcagatattgagggattttgtgtt
gtgtaatttcctatattttactgaatatccaccaaagaaaattcccaact
tccctttgtaaagaaaaaaaaaaccaaattaccaaatggtccaggcccca
ataatgcaagtaattcctctacccatttgtgtcatttttcaaaagtctac
aaggatttacatctactcgacaaaatgttaatttatgcttcaggaaaaag
aacagaggaatatatatcttgaggtgctctcctttttcactttgaatctg
agttctgtactaacttaaaaaatggaataaatttacaaaatagacatcaa
atactcaacagagagggagaaaaaggtccctatttatcatgttcttgcga
ctgtggctgagtgatatattgtgattacaactttttttaattggcaggct
tctaggatgcgctggggattggtgacaagatgatggatcagtttcttcat
attggctggttgatccaacaaacccaaagcacatattgacatttgtcact
cagcattggagccctacagacatctctgctgattagtcaaacacttcacc
tccctttaattaatgttttaagagcagagcttcagagagatgctcaaggg
aagaaatttttacaatataatggaaaagggggtttacagggaaccacttg
aataaggagtgagcatagccaggaagggagaaatcaatgacagtgtttta
gcagcttaaccctgctggcccttgcatgttaatagattatttatgcatca
cattgctatgagaagaaattagtatgattagcattttctgtttattgact
gctcatcacaaatcggaagactgtttacatgtatttgggtttattacctt
gaaaaatcattggcaaggaagggcaggacaagaatttatcatctcataaa
ctcaaagcttattttaccttaaagagaaaggtataaatgacagaaatata
tttcgcactgtgtgtaagaaaagagattttttttttttatttcaaagggg
taagcacttgtactgctagttttgtgtcaactggacacagtcacagagaa
ggagctcagttgagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_93107660_93108860
seq2: B6Ng01-218D06.b_44_1234

seq1  GAATTCACTCAGAACCTGTGTACCAATTCTTTCCATTTTCTTCTGGAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCAGAACCTGTGTACCAATTCTTTCCATTTTCTTCTGGAATG  50

seq1  AGAATGTTTGCTCTACTCTTGTATACATTAGCTCTGTACTTTGATTTCAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATGTTTGCTCTACTCTTGTATACATTAGCTCTGTACTTTGATTTCAC  100

seq1  AAGTTCACAAGTACAGAGGAATTTTACTTCTCAGTGAATCATAGTAGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTCACAAGTACAGAGGAATTTTACTTCTCAGTGAATCATAGTAGCTT  150

seq1  CAGCCTTCCCTTCCCTTGGTTTAGATGCTATCTTCTCAGGAGACTTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTTCCCTTCCCTTGGTTTAGATGCTATCTTCTCAGGAGACTTTTGA  200

seq1  CCTGGAGTTGATGCTGGGATGACTTAAGATTTTCTAAGCAGCAGCGACAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAGTTGATGCTGGGATGACTTAAGATTTTCTAAGCAGCAGCGACAG  250

seq1  GAACAAATCCTTCCAGATATGTAAAAGAGAATATACACTGATGAGATACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAAATCCTTCCAGATATGTAAAAGAGAATATACACTGATGAGATACG  300

seq1  CAAACAAAGGGGACAAAATCTTGCAGCAAAATGATGATAATAATAAACCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAAAGGGGACAAAATCTTGCAGCAAAATGATGATAATAATAAACCA  350

seq1  AAAAAAAAAAAAAAAATCCCAGGCCCTTAAAGAATGAACGCTTAACAGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAATCCCAGGCCCTTAAAGAATGAACGCTTAACAGAG  400

seq1  TCTGAAGAGTAAGAAATGATAAGCCTGAAAAGGGACTTAAATGTGGCTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAGAGTAAGAAATGATAAGCCTGAAAAGGGACTTAAATGTGGCTAG  450

seq1  GAACTTTCCTAATCTAAGAGCTAGGGTGACCTCGAGCTAAAATAAATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTTTCCTAATCTAAGAGCTAGGGTGACCTCGAGCTAAAATAAATCTA  500

seq1  GTAAAGCTGCAAAAATAAGTTGTTGTATTGCAGTTTCATAAAACTATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAGCTGCAAAAATAAGTTGTTGTATTGCAGTTTCATAAAACTATAGA  550

seq1  CAAAATAACAATGAAATCTTCAGAAGAAAAGCAATACCTTACATTTAGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATAACAATGAAATCTTCAGAAGAAAAGCAATACCTTACATTTAGGT  600

seq1  AAGAACAACTTAAACATGAATAGTTATCCACAAAAATCTCTGATAGCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACAACTTAAACATGAATAGTTATCCACAAAAATCTCTGATAGCTGA  650

seq1  AGGGAAAACTCAGTATTTTTAAAGAACACACACACACACACACACACACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAAAACTCAGTATTTTTAAAGAACACACACACACACACACACACACA  700

seq1  CACACACACACACACACACATACACTCACACATATACACATTACCAGGCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACACACATACACTCACACATATACACATTACCAGGCC  750

seq1  AGATTCTCATACCCAATAAAATGAGCTTGAACTTCTTTATCTAGGGTAGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTCATACCCAATAAAATGAGCTTGAACTTCTTTATCTAGGGTAGG  800

seq1  ACCCTACACAAAGTGTTCGTCTTTTCACATAAACATGTCTATTGATATTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTACACAAAGTGTTCGTCTTTTCACATAAACATGTCTATTGATATTT  850

seq1  CCATCCTTATGGTCTTATTTATGCATCCATTTTTAGGAGAGGCTGTTTCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCCTTATGGTCTTATTTATGCATCCATTTTTAGGAGAGGCTGTTTCC  900

seq1  CAGCAGGATTGCAGGATT-CCTGCTATTCTAGCTTTGACAATCATTCTGA  949
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAGCAGGATTGCAGGATTCCCTGCTATTCTAGCTTTGACAATCATTCTGA  950

seq1  GCCTTTCTGAGCTGTTTCCTGAGTCCTAGCTACAGGGACGATGATGTAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTTCTGAGCTGTTTCCTGAGTCCTAGCTACAGGGACGATGATGTAAA  1000

seq1  TATATCTGTTGAAGCTGGCATCTCCAAGATCTATTGATGTGTGCTTGAGT  1049
      ||||||||||||||||||||||||  ||||||| ||||||||||||||||
seq2  TATATCTGTTGAAGCTGGCATCTC--AGATCTA-TGATGTGTGCTTGAGT  1047

seq1  CTGTGATAGGGAGGCTTCTTTGACGAGGGGTAGGTGCACTTGTTTGTGGG  1099
      |||||||||||| ||||||||||||||||||| ||||||||| |||||||
seq2  CTGTGATAGGGA-GCTTCTTTGACGAGGGGTA-GTGCACTTG-TTGTGGG  1094

seq1  TATAAAG-ATAAGATTTAAAATGTAGTATGGAATTTTTTGATCCTGCAAA  1148
      ||||||| |||||| || ||||||||||| ||| |||| ||||||||  |
seq2  TATAAAGAATAAGAATT-AAATGTAGTAT-GAAGTTTTGGATCCTGC--A  1140

seq1  AATTGAAGTAG-TAAGATAGTTTTTACTCATTATTCTGAGGAGAATTAGC  1197
      ||||| ||||| ||||||    |||||||||||||| || | ||||||||
seq2  AATTG-AGTAGATAAGAT--GATTTACTCATTATTCCGAAGGGAATTAGC  1187

seq1  TTTT  1201
      ||||
seq2  TTTT  1191


seq1: chr4_93200156_93201281
seq2: B6Ng01-218D06.g_63_1177 (reverse)

seq1  CCTCAACTGAAGCTCCTTTCTCTGTGACTGTGTCAAGTTGACACAAAACT  50
      ||||||||| |||||| ||||||||||||||||| |||||||||||||||
seq2  CCTCAACTG-AGCTCC-TTCTCTGTGACTGTGTCCAGTTGACACAAAACT  48

seq1  AGCCAGTACAAGTGGCCTTTACCCCTTGGAAATTAAAAAAAAAAAATCTC  100
      || |||||||||||    ||||||||| |||| |||||||||||||||||
seq2  AG-CAGTACAAGTG---CTTACCCCTTTGAAA-TAAAAAAAAAAAATCTC  93

seq1  TTTTCTTTACAACACAGTGCGAAATATATTTCTGTTCATTTATACCTTTC  150
      ||||| |||| ||||||||||||||||||||||| |||||||||||||||
seq2  TTTTC-TTAC-ACACAGTGCGAAATATATTTCTG-TCATTTATACCTTTC  140

seq1  TTCTTTAAGGTAAAATAAGCTTTGAGTTTATGAGATGATAAATTCTTGTC  200
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TCTTTAAGGTAAAATAAGCTTTGAGTTTATGAGATGATAAATTCTTGTC  189

seq1  CTGCCCTTCCTTGCCAATGATTTTTCAAGGTAATAAACCCAAATACATGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTTCCTTGCCAATGATTTTTCAAGGTAATAAACCCAAATACATGT  239

seq1  AAACAGTCTTCCGATTTGTGATGAGCAGTCAATAAACAGAAAATGCTAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAGTCTTCCGATTTGTGATGAGCAGTCAATAAACAGAAAATGCTAAT  289

seq1  CATACTAATTTCTTCTCATAGCAATGTGATGCATAAATAATCTATTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATACTAATTTCTTCTCATAGCAATGTGATGCATAAATAATCTATTAACA  339

seq1  TGCAAGGGCCAGCAGGGTTAAGCTGCTAAAACACTGTCATTGATTTCTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGGCCAGCAGGGTTAAGCTGCTAAAACACTGTCATTGATTTCTCC  389

seq1  CTTCCTGGCTATGCTCACTCCTTATTCAAGTGGTTCCCTGTAAACCCCCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCCTGGCTATGCTCACTCCTTATTCAAGTGGTTCCCTGTAAACCCCCT  439

seq1  TTTCCATTATATTGTAAAAATTTCTTCCCTTGAGCATCTCTCTGAAGCTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCATTATATTGTAAAAATTTCTTCCCTTGAGCATCTCTCTGAAGCTC  489

seq1  TGCTCTTAAAACATTAATTAAAGGGAGGTGAAGTGTTTGACTAATCAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTCTTAAAACATTAATTAAAGGGAGGTGAAGTGTTTGACTAATCAGCA  539

seq1  GAGATGTCTGTAGGGCTCCAATGCTGAGTGACAAATGTCAATATGTGCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATGTCTGTAGGGCTCCAATGCTGAGTGACAAATGTCAATATGTGCTT  589

seq1  TGGGTTTGTTGGATCAACCAGCCAATATGAAGAAACTGATCCATCATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTTTGTTGGATCAACCAGCCAATATGAAGAAACTGATCCATCATCTT  639

seq1  GTCACCAATCCCCAGCGCATCCTAGAAGCCTGCCAATTAAAAAAAGTTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCAATCCCCAGCGCATCCTAGAAGCCTGCCAATTAAAAAAAGTTGT  689

seq1  AATCACAATATATCACTCAGCCACAGTCGCAAGAACATGATAAATAGGGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACAATATATCACTCAGCCACAGTCGCAAGAACATGATAAATAGGGA  739

seq1  CCTTTTTCTCCCTCTCTGTTGAGTATTTGATGTCTATTTTGTAAATTTAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTTTCTCCCTCTCTGTTGAGTATTTGATGTCTATTTTGTAAATTTAT  789

seq1  TCCATTTTTTAAGTTAGTACAGAACTCAGATTCAAAGTGAAAAAGGAGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATTTTTTAAGTTAGTACAGAACTCAGATTCAAAGTGAAAAAGGAGAG  839

seq1  CACCTCAAGATATATATTCCTCTGTTCTTTTTCCTGAAGCATAAATTAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTCAAGATATATATTCCTCTGTTCTTTTTCCTGAAGCATAAATTAAC  889

seq1  ATTTTGTCGAGTAGATGTAAATCCTTGTAGACTTTTGAAAAATGACACAA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTGTCGAGTAGATGTAAATCCTTGTAGACTTTTGAAAAATGACACAA  939

seq1  ATGGGTAGAGGAATTACTTGCATTATTGGGGCCTGGACCATTTGGTAATT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGGTAGAGGAATTACTTGCATTATTGGGGCCTGGACCATTTGGTAATT  989

seq1  TGGTTTTTTTTTTCTTTACAAAGGGAAGTTGGGAATTTTCTTTGGTGGAT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTTTTTTTTCTTTACAAAGGGAAGTTGGGAATTTTCTTTGGTGGAT  1039

seq1  ATTCAGTAAAATATAGGAAATTACACAACACAAAATCCCTCAATATCTGC  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTAAAATATAGGAAATTACACAACACAAAATCCCTCAATATCTGC  1089

seq1  AAGGCTCCCTGACCTGTGGAGAATTC  1126
      ||||||||||||||||||||||||||
seq2  AAGGCTCCCTGACCTGTGGAGAATTC  1115


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