BAC Information

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BAC

Clone NameB6Ng01-218D20
Chromosome4 (Build37)
Map Location 113,839,342 - 113,980,501
singlet/doubletdoublet
Overlap geneA630098G03Rik
Upstream geneLOC230622, LOC100040607, LOC242627, LOC100040625
Downstream geneLOC666048, Foxd2, LOC100040736, Foxe3, Cmpk, Stil, Tal1, Pdzk1ip1, Cyp4x1, Cyp4a21-ps, LOC384042, LOC230639, Cyp4a12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218D20.bB6Ng01-218D20.g
ACCGA034419GA034420
length1,1061,102
definitionB6Ng01-218D20.b B6Ng01-218D20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,979,426 - 113,980,501)(113,839,342 - 113,840,445)
sequence
gaattctttggaagaatcatctgaggtgatcatatccataaacatgggtg
aggaatgagaatattgattagacattgttggtgattagggaataaaggta
aaagattcttactaaactgctttgcttatgcactaaaatggattttacaa
ggcactgtacacattggtctaggagaaggttcaggagtctgactaagttt
agccaagcctagagtcattgaactgtggcaacaatttcagtacagcaatt
ctgtgtgaaacattaagggagcatacctcccccttgtgtcttcttttttc
atactgcctttacagaggccactgactcaaaaaaaaaaaccttacagctt
aaacacctactttcagagaagggcaaagtgggcccagtgactgtcaccga
gagtcactggggaaggcatgtcatctggttgtctgacttgtggcctcttc
ctttctctctacttcacacccacacagtgtaagcctctcccatgaaacct
ctttctggcatctttaaacctcgcccatgaaacctctttctggcatcttt
ctaaacactgctgcctgccagctgcctgcctcctgtttttctccactggt
tgcaccagcatttggtatcactggtcttgctctgggacatcgctaagttt
ctgttagagaagtttatcagtaattaatataatggtagttcacacaatca
caattattcaggttagcaacaaacaacgattttgtgctaaaccatttcag
tgagttgagtctgtaataaaaccaaaagaagtgacatgtcccacagtggc
ctcaagttgacagagtttgggtaggagggcaggaggatggggagagtctg
catatgtattcacacacagatacatagacacagagacactcactgactca
ctcctgactcactcagactctcacagacacacactgaccctcacagacac
actcccccactcactctctcactgacactcacagactcacactcaccaca
tacccccctgaccccacacaccacacactcattacccctctcggaccccc
ccccccctggtggtagaataaccagtactggggccataattgctctcagc
cctgct
gaattcagttcattagtttcctgtccatggttgtttcatggatatttcta
gtttatatatgtatgtgatatcacattctcacttttagtgtggaatcaaa
tgtctctcaaaattaaactttgaaacgatgttcaaacatcatcatggctt
taagtatcaatgtaaaactatttcatttcagaaaataagataatttattt
tgcagccaaatattaatggccatggctcaggaacataaatttagatgaaa
ctgctggtaaaagtttcatgaagcaaaagaacaaaggaaaccataaatca
agatacttatatattagtggggccatcaggtaagtggattacaaccaata
ttagaaaaattctacatatgaggagatgctatctgatgaagccttggagt
tggtggaagttacaggtctgtttatatattcttacattttaatttaatct
attttattttattttattttattttattttattttatctctaagtaggta
tgtgtatgtcagtcccagatcctgcagtggtgaagctggaatttctggtg
gttgtgaaatgtctgatgtgggtgctgggaattgaactttccagaattga
aagtatgcacttatagcacttgaaccatatttctaatctcattgtctcca
cattgttaaaaatgagtttactgatagccactagagtgctaagttaaaaa
ctgactgggcaataaatgcctgtttagatggctaagggaagcccaagaga
gttgattctggatccgcaaaatttcagcttcatataattacagaacttta
accatcatttttaaacatctctttaacatctacaaactttgtagatgttt
agggtaagagaagttttttttttctttttaaataaagaatttcagttctc
aaaaagaaaagaaagaaaaaaagtacaaaacattaaatctacacagagat
ccattccagtcttacatatgtccatgcaatgttctttacagaaaagtaat
ctcatcaagacttaggcaaggcatggagtgatgtagattatttccagtct
tgttgttttcctttttaatttaagttaatttgaagaactttttactcctc
ca
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_113979426_113980501
seq2: B6Ng01-218D20.b_71_1152 (reverse)

seq1  AGCAGGGCT--GAGCAA-TAT-GCCCCAGTACTGGTTA-TCTACCACAGT  45
      |||||||||  |||||| ||| |||||||||||||||| ||||||||   
seq2  AGCAGGGCTGAGAGCAATTATGGCCCCAGTACTGGTTATTCTACCACCAG  50

seq1  GTGTGTGTGTGTCTGTGTGTG--TATGTGTGTGTGTGTGTGT-GTGTCTG  92
      | | | | | ||| | | | |   ||| ||||||| |||||| | ||| |
seq2  GGGGGGGGGGGTCCGAGAGGGGTAATGAGTGTGTG-GTGTGTGGGGTCAG  99

seq1  TGTGTGTATGTGTGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTGTGTG  142
       | | ||||||| ||| ||||| ||||||| ||||| ||| | | ||| |
seq2  -GGGGGTATGTG-GTGAGTGTGAGTCTGTGAGTGTCAGTGAGAGAGTGAG  147

seq1  TGTGTGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTGTGTCTGTGTG  192
      || | | ||||||||||| | ||| ||||||||||||| | ||||| |||
seq2  TGGGGGAGTGTGTCTGTGAGGGTCAGTGTGTGTCTGTGAGAGTCTGAGTG  197

seq1  TGTC-TGTGTGTGTCTGTGTGTGTCTCTGTGTCTATGTATCTGTGTGTGA  241
       |||  | ||| ||| ||| ||||||||||||||||||||||||||||||
seq2  AGTCAGGAGTGAGTCAGTGAGTGTCTCTGTGTCTATGTATCTGTGTGTGA  247

seq1  ATACATATGCAGACTCTCCCCATCCTCCTGCCCTCCTACCCAAACTCTGT  291
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATGCAGACTCTCCCCATCCTCCTGCCCTCCTACCCAAACTCTGT  297

seq1  CAACTTGAGGCCACTGTGGGACATGTCACTTCTTTTGGTTTTATTACAGA  341
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTGAGGCCACTGTGGGACATGTCACTTCTTTTGGTTTTATTACAGA  347

seq1  CTCAACTCACTGAAATGGTTTAGCACAAAATCGTTGTTTGTTGCTAACCT  391
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCACTGAAATGGTTTAGCACAAAATCGTTGTTTGTTGCTAACCT  397

seq1  GAATAATTGTGATTGTGTGAACTACCATTATATTAATTACTGATAAACTT  441
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATAATTGTGATTGTGTGAACTACCATTATATTAATTACTGATAAACTT  447

seq1  CTCTAACAGAAACTTAGCGATGTCCCAGAGCAAGACCAGTGATACCAAAT  491
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAACAGAAACTTAGCGATGTCCCAGAGCAAGACCAGTGATACCAAAT  497

seq1  GCTGGTGCAACCAGTGGAGAAAAACAGGAGGCAGGCAGCTGGCAGGCAGC  541
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGTGCAACCAGTGGAGAAAAACAGGAGGCAGGCAGCTGGCAGGCAGC  547

seq1  AGTGTTTAGAAAGATGCCAGAAAGAGGTTTCATGGGCGAGGTTTAAAGAT  591
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTTAGAAAGATGCCAGAAAGAGGTTTCATGGGCGAGGTTTAAAGAT  597

seq1  GCCAGAAAGAGGTTTCATGGGAGAGGCTTACACTGTGTGGGTGTGAAGTA  641
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAAAGAGGTTTCATGGGAGAGGCTTACACTGTGTGGGTGTGAAGTA  647

seq1  GAGAGAAAGGAAGAGGCCACAAGTCAGACAACCAGATGACATGCCTTCCC  691
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAAAGGAAGAGGCCACAAGTCAGACAACCAGATGACATGCCTTCCC  697

seq1  CAGTGACTCTCGGTGACAGTCACTGGGCCCACTTTGCCCTTCTCTGAAAG  741
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGACTCTCGGTGACAGTCACTGGGCCCACTTTGCCCTTCTCTGAAAG  747

seq1  TAGGTGTTTAAGCTGTAAGGTTTTTTTTTTTGAGTCAGTGGCCTCTGTAA  791
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTGTTTAAGCTGTAAGGTTTTTTTTTTTGAGTCAGTGGCCTCTGTAA  797

seq1  AGGCAGTATGAAAAAAGAAGACACAAGGGGGAGGTATGCTCCCTTAATGT  841
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGTATGAAAAAAGAAGACACAAGGGGGAGGTATGCTCCCTTAATGT  847

seq1  TTCACACAGAATTGCTGTACTGAAATTGTTGCCACAGTTCAATGACTCTA  891
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACACAGAATTGCTGTACTGAAATTGTTGCCACAGTTCAATGACTCTA  897

seq1  GGCTTGGCTAAACTTAGTCAGACTCCTGAACCTTCTCCTAGACCAATGTG  941
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGCTAAACTTAGTCAGACTCCTGAACCTTCTCCTAGACCAATGTG  947

seq1  TACAGTGCCTTGTAAAATCCATTTTAGTGCATAAGCAAAGCAGTTTAGTA  991
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGTGCCTTGTAAAATCCATTTTAGTGCATAAGCAAAGCAGTTTAGTA  997

seq1  AGAATCTTTTACCTTTATTCCCTAATCACCAACAATGTCTAATCAATATT  1041
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTTTTACCTTTATTCCCTAATCACCAACAATGTCTAATCAATATT  1047

seq1  CTCATTCCTCACCCATGTTTATGGATATGATCACC  1076
      |||||||||||||||||||||||||||||||||||
seq2  CTCATTCCTCACCCATGTTTATGGATATGATCACC  1082

seq1: chr4_113839342_113840445
seq2: B6Ng01-218D20.g_64_1165

seq1  GAATTCAGTTCATTAGTTTCCTGTCCATGGTTGTTTCATGGATATTTCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCATTAGTTTCCTGTCCATGGTTGTTTCATGGATATTTCTA  50

seq1  GTTTATATATGTATGTGATATCACATTCTCACTTTTAGTGTGGAATCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATATATGTATGTGATATCACATTCTCACTTTTAGTGTGGAATCAAA  100

seq1  TGTCTCTCAAAATTAAACTTTGAAACGATGTTCAAACATCATCATGGCTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTCAAAATTAAACTTTGAAACGATGTTCAAACATCATCATGGCTT  150

seq1  TAAGTATCAATGTAAAACTATTTCATTTCAGAAAATAAGATAATTTATTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGTATCAATGTAAAACTATTTCATTTCAGAAAATAAGATAATTTATTT  200

seq1  TGCAGCCAAATATTAATGGCCATGGCTCAGGAACATAAATTTAGATGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCAAATATTAATGGCCATGGCTCAGGAACATAAATTTAGATGAAA  250

seq1  CTGCTGGTAAAAGTTTCATGAAGCAAAAGAACAAAGGAAACCATAAATCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCTGGTAAAAGTTTCATGAAGCAAAAGAACAAAGGAAACCATAAATCA  300

seq1  AGATACTTATATATTAGTGGGGCCATCAGGTAAGTGGATTACAACCAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATACTTATATATTAGTGGGGCCATCAGGTAAGTGGATTACAACCAATA  350

seq1  TTAGAAAAATTCTACATATGAGGAGATGCTATCTGATGAAGCCTTGGAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAAAAATTCTACATATGAGGAGATGCTATCTGATGAAGCCTTGGAGT  400

seq1  TGGTGGAAGTTACAGGTCTGTTTATATATTCTTACATTTTAATTTAATCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGGAAGTTACAGGTCTGTTTATATATTCTTACATTTTAATTTAATCT  450

seq1  ATTTTATTTTATTTTATTTTATTTTATTTTATTTTATCTCTAAGTAGGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATTTTATTTTATTTTATTTTATTTTATTTTATCTCTAAGTAGGTA  500

seq1  TGTGTATGTCAGTCCCAGATCCTGCAGTGGTGAAGCTGGAATTTCTGGTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTATGTCAGTCCCAGATCCTGCAGTGGTGAAGCTGGAATTTCTGGTG  550

seq1  GTTGTGAAATGTCTGATGTGGGTGCTGGGAATTGAACTTTCCAGAATTGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTGAAATGTCTGATGTGGGTGCTGGGAATTGAACTTTCCAGAATTGA  600

seq1  AAGTATGCACTTATAGCACTTGAACCATATTTCTAATCTCATTGTCTCCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATGCACTTATAGCACTTGAACCATATTTCTAATCTCATTGTCTCCA  650

seq1  CATTGTTAAAAATGAGTTTACTGATAGCCACTAGAGTGCTAAGTTAAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTAAAAATGAGTTTACTGATAGCCACTAGAGTGCTAAGTTAAAAA  700

seq1  CTGACTGGGCAATAAATGCCTGTTTAGATGGCTAAGGGAAGCCCAAGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTGGGCAATAAATGCCTGTTTAGATGGCTAAGGGAAGCCCAAGAGA  750

seq1  GTTGATTCTGGATCCGCAAAATTTCAGCTTCATATAATTACAGAACTTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGATTCTGGATCCGCAAAATTTCAGCTTCATATAATTACAGAACTTTA  800

seq1  ACCATCATTTTTAAACATCTCTTTAACATCTACAAACTTTGTAGATGTTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATCATTTTTAAACATCTCTTTAACATCTACAAACTTTGTAGATGTTT  850

seq1  AGGGTAAGAGAAG-TTTTTTTTTCTTTTTAAATAAAGAATTTCAGTTCTC  899
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGGGTAAGAGAAGTTTTTTTTTTCTTTTTAAATAAAGAATTTCAGTTCTC  900

seq1  AAAAAGAAAAGAAAGAAAAAAAGTACAAAAACATTAAATCTACACAGAGA  949
      |||||||||||||||||||||||||| |||||||||||||||||||||| 
seq2  AAAAAGAAAAGAAAGAAAAAAAGTAC-AAAACATTAAATCTACACAGAG-  948

seq1  ATCCATTCCAGTCTTACAATATGTCCATGCAATGTTCTTTACAGAAAAGT  999
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATCCATTCCAGTCTTAC-ATATGTCCATGCAATGTTCTTTACAGAAAAGT  997

seq1  AATCTCATCAAGACTTAGGCAAGGCAT-GAGTGATGTAGA-TATTTCAAG  1047
      ||||||||||||||||||||||||||| |||||||||||| |||||| ||
seq2  AATCTCATCAAGACTTAGGCAAGGCATGGAGTGATGTAGATTATTTCCAG  1047

seq1  TCTTGTTTGTTTTCTTTTTTAATTTAAATTTATTTTTAATTTACTTTTTA  1097
      ||||| |||||||| |||||||||||| || |  ||| |   ||||||||
seq2  TCTTG-TTGTTTTCCTTTTTAATTTAAGTTAA--TTTGAAGAACTTTTTA  1094

seq1  CT-CTCCA  1104
      || |||||
seq2  CTCCTCCA  1102