BAC Information

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BAC

Clone NameB6Ng01-218F22
Chromosome4 (Build37)
Map Location 78,561,764 - 78,609,682
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039974, LOC100039996
Downstream geneLOC100040026, LOC100040036, LOC667922
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218F22.bB6Ng01-218F22.g
ACCGA034518GA034519
length8161,132
definitionB6Ng01-218F22.b B6Ng01-218F22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,561,764 - 78,562,578)(78,608,553 - 78,609,682)
sequence
gaattctaagaatgatgatcaccttaatagtttgggggaaattattatgt
tttaatggtttatttcactttccatagatgagagattcattttcaaatac
ttgttttcccccattatcatttatttgtatttttccacacgctggttacc
tggtttctttgccatatattttacagtgataaaaaaataaatacattttt
taatcaactcgcatgagttctaactagggagaagagttaattttaaagat
tataccacacgttatgagtagtagatttcttttacataacacacttaaat
tcaaggaaatttgtagtcagtctctggtattttaatgctctacccttaca
taatggggtggtcaagcttccagctcatctagttctttcatcttaaacaa
aagtattgagtcagccatttttctttccaatgccattggtgatatgctta
aacttttccaacttttaggttattgtgaaggtatatgactgtctctagtc
ataacctaaatcttcttgctgaagacagggtgaaatcttcctgtcttcag
gccttatattttcatctgggcatgcagctgatctttatttaggtgctctt
tctgacacttcattttcctttagggtatgattttaaatgaaagtgatgat
tttttcaaacttgcccgctaagtgatttctgccctgtgtatgcatagtgt
catttactttgtggtttgtgacatttgtgaatgaaatataaatgtatttt
tatcattgatagcttgcattttttccagcacactttgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgt

gaattcaaagtgtccatatttgaagttgatataactcgatacataaaatg
tcctaaagacaacacctgaaaactcctataattagataaacagattcagc
aaaatagcaggatacaaaattaatttttaaaatgtaggagcccttgcata
ttcaaatgagtaacatagtgagcaaggcataaggtaatcaatagcactca
taattgtctaaaaaaataaaatgtcttgaaacatatcaaaatggaagatt
tatacagtataatccccaagacagtggagaactaaaagaggaaaaacagc
agatgaaaagtctttcggtgtttggagattagtaaattaaatagtttgaa
aacagctattctatcaaaagcaagatgcaatttaaatgcaatttctattg
aaattctaatataggtaatctcaaaatttgaaaaagcaatctcaaatgcc
atgtggaaacagacaaaagatgtggattaactaaggcattcctggaacta
gactcaccctaaagaccagcttgaggaacgtgagtcaaatagttgtcttt
ctaagtctttctaatatgtcttgttcagaggcagactctatacacatgct
accaatggaagagaaataataaacacacaaatgcacgtacagtaaacatg
caacaggatcagaagatttaaaatataataagaaggcagtggggtttctt
attaaactagagacacatatttcatatatgttcattgccatgctgtgcac
catagtaacagacaactgaaaatatatatatatttgtacatttagagaac
tgatttaaaaaatcgaattgattcttcataaaattataccactagtaagg
acctaaagggtactacaatgggaactgtaaagaaaattatccctgatcta
aacaaaatcatagcaaatatataattgtttgtgacttcatgacaacaatg
attctttccataagaagccaaaaagcctatatgacttataaacagtaaag
tcattatctgcagtagtatatcaaagtctaacagtgctgatgtactgtga
attacaaatattaaacagctctacttattttctcatttaatttactacta
gcaatcagtgaactttttattgaaatatagat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_78561764_78562578
seq2: B6Ng01-218F22.b_48_863

seq1  GAATTCTAAGAATGATGATCACCTTAATAGTTTGGGGGAAATTATTATGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAAGAATGATGATCACCTTAATAGTTTGGGGGAAATTATTATGT  50

seq1  TTTAATGGTTTATTTCACTTTCCATAGATGAGAGATTCATTTTCAAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGGTTTATTTCACTTTCCATAGATGAGAGATTCATTTTCAAATAC  100

seq1  TTGTTTTCCCCCATTATCATTTATTTGTATTTTTCCACACGCTGGTTACC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTTCCCCCATTATCATTTATTTGTATTTTTCCACACGCTGGTTACC  150

seq1  TGGTTTCTTTGCCATATATTTTACAGTGATAAAAAAATAAATACATTTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTTTCTTTGCCATATATTTTACAGTGATAAAAAAATAAATACATTTTT  200

seq1  TAATCAACTCGCATGAGTTCTAACTAGGGAGAAGAGTTAATTTTAAAGAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCAACTCGCATGAGTTCTAACTAGGGAGAAGAGTTAATTTTAAAGAT  250

seq1  TATACCACACGTTATGAGTAGTAGATTTCTTTTACATAACACACTTAAAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACCACACGTTATGAGTAGTAGATTTCTTTTACATAACACACTTAAAT  300

seq1  TCAAGGAAATTTGTAGTCAGTCTCTGGTATTTTAATGCTCTACCCTTACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGGAAATTTGTAGTCAGTCTCTGGTATTTTAATGCTCTACCCTTACA  350

seq1  TAATGGGGTGGTCAAGCTTCCAGCTCATCTAGTTCTTTCATCTTAAACAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGGGTGGTCAAGCTTCCAGCTCATCTAGTTCTTTCATCTTAAACAA  400

seq1  AAGTATTGAGTCAGCCATTTTTCTTTCCAATGCCATTGGTGATATGCTTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTATTGAGTCAGCCATTTTTCTTTCCAATGCCATTGGTGATATGCTTA  450

seq1  AACTTTTCCAACTTTTAGGTTATTGTGAAGGTATATGACTGTCTCTAGTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTCCAACTTTTAGGTTATTGTGAAGGTATATGACTGTCTCTAGTC  500

seq1  ATAACCTAAATCTTCTTGCTGAAGACAGGGTGAAATCTTCCTGTCTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAACCTAAATCTTCTTGCTGAAGACAGGGTGAAATCTTCCTGTCTTCAG  550

seq1  GCCTTATATTTTCATCTGGGCATGCAGCTGATCTTTATTTAGGTGCTCTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTATATTTTCATCTGGGCATGCAGCTGATCTTTATTTAGGTGCTCTT  600

seq1  TCTGACACTTCATTTTCCTTTAGGGTATGATTTTAAATGAAAGTGATGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGACACTTCATTTTCCTTTAGGGTATGATTTTAAATGAAAGTGATGAT  650

seq1  TTTTTCAAACTTGCCCGCTAAGTGATTTCTGCCCTGTGTATGCATAGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAACTTGCCCGCTAAGTGATTTCTGCCCTGTGTATGCATAGTGT  700

seq1  CATTTACTTTGTGGTTTGTGACATTTGTGAATGAAATATAAATGTATTTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTACTTTGTGGTTTGTGACATTTGTGAATGAAATATAAATGTATTTT  750

seq1  TATCATTGATAGCTTGCA-TTTTTCCAGCACACTTTGTGTGTGTGTGTGT  799
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  TATCATTGATAGCTTGCATTTTTTCCAGCACACTTTGTGTGTGTGTGTGT  800

seq1  GTGTGTGTGTGTGTGT  815
      ||||||||||||||||
seq2  GTGTGTGTGTGTGTGT  816


seq1: chr4_78608553_78609682
seq2: B6Ng01-218F22.g_64_1195 (reverse)

seq1  ATCTATA-TTCAATAAAA--GTCACTGA-TGCTAAGTAGTAAAATTTAAA  46
      ||||||| ||||||||||   ||||||| |||| |||||||||  |||||
seq2  ATCTATATTTCAATAAAAAGTTCACTGATTGCT-AGTAGTAAA--TTAAA  47

seq1  TGAGAAA--TAGTAGAGCTGTTTAATATTTGTAATTCACAGTACATCAGC  94
      |||||||   ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATAAGTAGAGCTGTTTAATATTTGTAATTCACAGTACATCAGC  97

seq1  ACTGTTAGACTTTGATATACTACTGCAGATAATTGACTTTACTGTTTATA  144
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  ACTGTTAGACTTTGATATACTACTGCAGATAA-TGACTTTACTGTTTATA  146

seq1  AGTCATAATAGGCTTTTTGGCTTCTTATGG-AAGAATCATTGTTGTCATG  193
      |||||| ||||||||||||||||||||||| |||||||||||||||||||
seq2  AGTCAT-ATAGGCTTTTTGGCTTCTTATGGAAAGAATCATTGTTGTCATG  195

seq1  AAGTCACAAACAATTATATATTTGCTATGATTTTGTTTAGATCAGGGATA  243
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTCACAAACAATTATATATTTGCTATGATTTTGTTTAGATCAGGGATA  245

seq1  ATTTTCTTTACAGTTCCCATTGTAGTACCCTTTAGGTCCTTACTAGTGGT  293
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTTTACAGTTCCCATTGTAGTACCCTTTAGGTCCTTACTAGTGGT  295

seq1  ATAATTTTATGAAGAATCAATTCGATTTTTTAAATCAGTTCTCTAAATGT  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATTTTATGAAGAATCAATTCGATTTTTTAAATCAGTTCTCTAAATGT  345

seq1  ACAAATATATATATATTTTCAGTTGTCTGTTACTATGGTGCACAGCATGG  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATATATATATATTTTCAGTTGTCTGTTACTATGGTGCACAGCATGG  395

seq1  CAATGAACATATATGAAATATGTGTCTCTAGTTTAATAAGAAACCCCACT  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATGAACATATATGAAATATGTGTCTCTAGTTTAATAAGAAACCCCACT  445

seq1  GCCTTCTTATTATATTTTAAATCTTCTGATCCTGTTGCATGTTTACTGTA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTCTTATTATATTTTAAATCTTCTGATCCTGTTGCATGTTTACTGTA  495

seq1  CGTGCATTTGTGTGTTTATTATTTCTCTTCCATTGGTAGCATGTGTATAG  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTGCATTTGTGTGTTTATTATTTCTCTTCCATTGGTAGCATGTGTATAG  545

seq1  AGTCTGCCTCTGAACAAGACATATTAGAAAGACTTAGAAAGACAACTATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTGCCTCTGAACAAGACATATTAGAAAGACTTAGAAAGACAACTATT  595

seq1  TGACTCACGTTCCTCAAGCTGGTCTTTAGGGTGAGTCTAGTTCCAGGAAT  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACGTTCCTCAAGCTGGTCTTTAGGGTGAGTCTAGTTCCAGGAAT  645

seq1  GCCTTAGTTAATCCACATCTTTTGTCTGTTTCCACATGGCATTTGAGATT  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTTAGTTAATCCACATCTTTTGTCTGTTTCCACATGGCATTTGAGATT  695

seq1  GCTTTTTCAAATTTTGAGATTACCTATATTAGAATTTCAATAGAAATTGC  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTTTTCAAATTTTGAGATTACCTATATTAGAATTTCAATAGAAATTGC  745

seq1  ATTTAAATTGCATCTTGCTTTTGATAGAATAGCTGTTTTCAAACTATTTA  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAATTGCATCTTGCTTTTGATAGAATAGCTGTTTTCAAACTATTTA  795

seq1  ATTTACTAATCTCCAAACACCGAAAGACTTTTCATCTGCTGTTTTTCCTC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTACTAATCTCCAAACACCGAAAGACTTTTCATCTGCTGTTTTTCCTC  845

seq1  TTTTAGTTCTCCACTGTCTTGGGGATTATACTGTATAAATCTTCCATTTT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAGTTCTCCACTGTCTTGGGGATTATACTGTATAAATCTTCCATTTT  895

seq1  GATATGTTTCAAGACATTTTATTTTTTTAGACAATTATGAGTGCTATTGA  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATGTTTCAAGACATTTTATTTTTTTAGACAATTATGAGTGCTATTGA  945

seq1  TTACCTTATGCCTTGCTCACTATGTTACTCATTTGAATATGCAAGGGCTC  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTTATGCCTTGCTCACTATGTTACTCATTTGAATATGCAAGGGCTC  995

seq1  CTACATTTTAAAAATTAATTTTGTATCCTGCTATTTTGCTGAATCTGTTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACATTTTAAAAATTAATTTTGTATCCTGCTATTTTGCTGAATCTGTTT  1045

seq1  ATCTAATTATAGGAGTTTTCAGGTGTTGTCTTTAGGACATTTTATGTATC  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTAATTATAGGAGTTTTCAGGTGTTGTCTTTAGGACATTTTATGTATC  1095

seq1  GAGTTATATCAACTTCAAATATGGACACTTTGAATTC  1130
      |||||||||||||||||||||||||||||||||||||
seq2  GAGTTATATCAACTTCAAATATGGACACTTTGAATTC  1132


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