BAC Information

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BAC

Clone NameB6Ng01-218K18
Chromosome4 (Build37)
Map Location 6,255,699 - 6,402,988
singlet/doubletdoublet
Overlap geneSdcbp, Nsmaf
Upstream gene1700012H17Rik, LOC669309, 3110003A22Rik, Cyp7a1
Downstream geneLOC100039397, LOC100039414, Tox, LOC100039421, LOC666700
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218K18.bB6Ng01-218K18.g
ACCGA034737GA034738
length1,172957
definitionB6Ng01-218K18.b B6Ng01-218K18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(6,401,803 - 6,402,988)(6,255,699 - 6,256,652)
sequence
gaattccaaccagtacatagaaagaaaaccattgactctggcccactgag
cttctcttttctttatctggtccccactcttcatagtatctgtacctctg
tatctggcccatccatcatcctatcctgatcagagttctctcatatctga
gccaaatgatagtgaaccaactagtccaggggcactggacaggtgttaag
gactattaagacatatgaaaagctgttaaaaatcacaaatcatagtaatg
ataagatttttttttaacctttgacctggcttaaatgataagtttgaaat
aggatctcatgtatgttggcatcaaatgctatatagtcaagggtgactac
cctgtctgggttttatgtcacgttgacacaaactagagtcatctaagagt
aggaaacttcaattaagagaatgcctccataatatcagactgtaggtcaa
cctgtagggtattaataaattagtgactaatgtgagaggtcccaggccat
tgagggtggtgccattcctgacctggtgatctggggtgctataagaaagc
aagctcacaatctatgatgagcaagccagtaagcagtaaccttccatggc
ctctgcatcagcttctatctcgacattcctgccctaactgctcctgatga
tgaactgttatattgaagtgtgagtgaaataaatgatttcctttccagat
tgcttttggtaatgttgtttcaccacaacaaaaggaacttgaaatcctca
tggtccagcctcccactcttgagtgctgcaattacagatgtgcactattt
ggtttggacagtgtagggtactgggcacagatcttagagtaagctattca
aggatgcttgaccagtgagctacatcccaagccctggtgctttagacttt
cacagaaaacactccgttagatcttattgtcttataaataagcaaaatgg
cgtcccttgaagccagcatgactaaagccaggaaccatattcctcttcca
atctcttctgaagtgagaaaattatctttatggatccactgatgagtgtg
attaagtctcctgttcttgaaggcactctttcctagagcaatgcctgttg
ttgtaagccagaaaatgtaagtgctaatagcaacggttaatatacttttt
ctctgagattagcctgattcac

gaattcagtactttcgagattttaatgatgaagttttaattttgaatttt
aattatgaatgaagtttgcatggaaactgtcagattttgttactctgcta
ggaaaaaatatttttacttggtctctttggatttttaaccttggagtgga
tttcttttgtaaagatcttaactggcacgtttacaatctcaagactttga
aatcacgtgtgtttgcttgtgtgagagaggggtggggtgggatgcaggta
ccacatgaggacaaagggcaattttcaggagtctatgctctcctgtcacg
tgggtactaggaacaaaattcagctttccatgctcggcaggcaggacctc
taccctctggctcaaaatctcaagtgtttagcagagaaacatagatggca
gatgttctgcgcacgtcaggcagagaaactgtgaaacacatgaaaggcta
agcctgctgcagaggtgaggccatccatcggggaatgcgaccccagaccc
tggaagggcgagaagccctctcccttctcaaaagaaaagaggggtttcca
gagaggacccgcaggagccttcttgtgtcagtcagtatgtatttgggatc
atacatgccagggcacatgcgtggaagtcagatgacagaccgtggaattt
ggttttatctttctaacctgtgagtcctagggattgaactcaggtcatta
ggcttggcagcaagcaccttcacctttagccctctcgctggccttgcctt
tttaattctttggttttatttttttctattctagtaacttctctatattt
atgggtttccttcctctgacggtccatttggaagggttttttctcctatt
tttttttctagtgttattttgcccggcctggtaattggatttaccaccca
tctttaatatttttattttacttctctccttataataacggatactactt
ccaaata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_6401803_6402988
seq2: B6Ng01-218K18.b_46_1217 (reverse)

seq1  GTGAATCAAGCTTTATTTCCTCAGAGAAAAGTGATAATTACACGTGTTGC  50
      |||||||| ||  || |  |||||||||||   ||| | ||    |||||
seq2  GTGAATCAGGC--TAAT--CTCAGAGAAAAAGTATATTAAC---CGTTGC  43

seq1  TATAGGAACTTTACATTTTCTTGCTACAAACAACA-GCACTGCTCTAGAA  99
      |||  | || ||||||||||| |||   ||||||| ||| |||||||| |
seq2  TATTAGCAC-TTACATTTTCTGGCTTACAACAACAGGCATTGCTCTAGGA  92

seq1  AGGAGTGCTTTCAAGAACAGGGAGAACTTTATACAACACTCATCAGTGGG  149
      | |||||| |||||||||| |||| |||| ||   |||||||||||||| 
seq2  AAGAGTGCCTTCAAGAACA-GGAG-ACTTAAT--CACACTCATCAGTGGA  138

seq1  ATCATAAAGATAATTTTCTCACCTTCAGAAGAGATTGGAAGAGGAATATG  199
        ||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TCCATAAAGATAATTTTCTCA-CTTCAGAAGAGATTGGAAGAGGAATATG  187

seq1  G-TCCTGGCCTTAGTCATGCTGGCTTCAAGGGGACGCCATTTTTGCTTAT  248
      | ||||||| ||||||||||||||||||| ||||||||| ||||||||||
seq2  GTTCCTGGCTTTAGTCATGCTGGCTTCAA-GGGACGCCA-TTTTGCTTAT  235

seq1  TTATAAGACAATAAAGATCTAACGGAGTGTTTTCTGTGAAAGTCTAAAGC  298
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTATAAGACAAT-AAGATCTAACGGAGTGTTTTCTGTGAAAGTCTAAAGC  284

seq1  ACCAGGGCTTGGGATGTAGCTCACTGGTCAAGCATCCTTGAATAGCTTAC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGGCTTGGGATGTAGCTCACTGGTCAAGCATCCTTGAATAGCTTAC  334

seq1  TCTAAGATCTGTGCCCAGTACCCTACACTGTCCAAACCAAATAGTGCACA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAGATCTGTGCCCAGTACCCTACACTGTCCAAACCAAATAGTGCACA  384

seq1  TCTGTAATTGCAGCACTCAAGAGTGGGAGGCTGGACCATGAGGATTTCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAATTGCAGCACTCAAGAGTGGGAGGCTGGACCATGAGGATTTCAA  434

seq1  GTTCCTTTTGTTGTGGTGAAACAACATTACCAAAAGCAATCTGGAAAGGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCCTTTTGTTGTGGTGAAACAACATTACCAAAAGCAATCTGGAAAGGA  484

seq1  AATCATTTATTTCACTCACACTTCAATATAACAGTTCATCATCAGGAGCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCATTTATTTCACTCACACTTCAATATAACAGTTCATCATCAGGAGCA  534

seq1  GTTAGGGCAGGAATGTCGAGATAGAAGCTGATGCAGAGGCCATGGAAGGT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGGCAGGAATGTCGAGATAGAAGCTGATGCAGAGGCCATGGAAGGT  584

seq1  TACTGCTTACTGGCTTGCTCATCATAGATTGTGAGCTTGCTTTCTTATAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTGCTTACTGGCTTGCTCATCATAGATTGTGAGCTTGCTTTCTTATAG  634

seq1  CACCCCAGATCACCAGGTCAGGAATGGCACCACCCTCAATGGCCTGGGAC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCCCAGATCACCAGGTCAGGAATGGCACCACCCTCAATGGCCTGGGAC  684

seq1  CTCTCACATTAGTCACTAATTTATTAATACCCTACAGGTTGACCTACAGT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCACATTAGTCACTAATTTATTAATACCCTACAGGTTGACCTACAGT  734

seq1  CTGATATTATGGAGGCATTCTCTTAATTGAAGTTTCCTACTCTTAGATGA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATATTATGGAGGCATTCTCTTAATTGAAGTTTCCTACTCTTAGATGA  784

seq1  CTCTAGTTTGTGTCAACGTGACATAAAACCCAGACAGGGTAGTCACCCTT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTAGTTTGTGTCAACGTGACATAAAACCCAGACAGGGTAGTCACCCTT  834

seq1  GACTATATAGCATTTGATGCCAACATACATGAGATCCTATTTCAAACTTA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTATATAGCATTTGATGCCAACATACATGAGATCCTATTTCAAACTTA  884

seq1  TCATTTAAGCCAGGTCAAAGGTTAAAAAAAAATCTTATCATTACTATGAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTAAGCCAGGTCAAAGGTTAAAAAAAAATCTTATCATTACTATGAT  934

seq1  TTGTGATTTTTAACAGCTTTTCATATGTCTTAATAGTCCTTAACACCTGT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGATTTTTAACAGCTTTTCATATGTCTTAATAGTCCTTAACACCTGT  984

seq1  CCAGTGCCCCTGGACTAGTTGGTTCACTATCATTTGGCTCAGATATGAGA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTGCCCCTGGACTAGTTGGTTCACTATCATTTGGCTCAGATATGAGA  1034

seq1  GAACTCTGATCAGGATAGGATGATGGATGGGCCAGATACAGAGGTACAGA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACTCTGATCAGGATAGGATGATGGATGGGCCAGATACAGAGGTACAGA  1084

seq1  TACTATGAAGAGTGGGGACCAGATAAAGAAAAGAGAAGCTCAGTGGGCCA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTATGAAGAGTGGGGACCAGATAAAGAAAAGAGAAGCTCAGTGGGCCA  1134

seq1  GAGTCAATGGTTTTCTTTCTATGTACTGGTTGGAATTC  1186
      ||||||||||||||||||||||||||||||||||||||
seq2  GAGTCAATGGTTTTCTTTCTATGTACTGGTTGGAATTC  1172


seq1: chr4_6255699_6256652
seq2: B6Ng01-218K18.g_63_1019

seq1  GAATTCAGTACTTTCGAGATTTTAATGATGAAGTTTTAATTTTGAATTTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTACTTTCGAGATTTTAATGATGAAGTTTTAATTTTGAATTTT  50

seq1  AATTATGAATGAAGTTTGCATGGAAACTGTCAGATTTTGTTACTCTGCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTATGAATGAAGTTTGCATGGAAACTGTCAGATTTTGTTACTCTGCTA  100

seq1  GGAAAAAATATTTTTACTTGGTCTCTTTGGATTTTTAACCTTGGAGTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAAAATATTTTTACTTGGTCTCTTTGGATTTTTAACCTTGGAGTGGA  150

seq1  TTTCTTTTGTAAAGATCTTAACTGGCACGTTTACAATCTCAAGACTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTGTAAAGATCTTAACTGGCACGTTTACAATCTCAAGACTTTGA  200

seq1  AATCACGTGTGTTTGCTTGTGTGAGAGAGGGGTGGGGTGGGATGCAGGTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACGTGTGTTTGCTTGTGTGAGAGAGGGGTGGGGTGGGATGCAGGTA  250

seq1  CCACATGAGGACAAAGGGCAATTTTCAGGAGTCTATGCTCTCCTGTCACG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGAGGACAAAGGGCAATTTTCAGGAGTCTATGCTCTCCTGTCACG  300

seq1  TGGGTACTAGGAACAAAATTCAGCTTTCCATGCTCGGCAGGCAGGACCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTACTAGGAACAAAATTCAGCTTTCCATGCTCGGCAGGCAGGACCTC  350

seq1  TACCCTCTGGCTCAAAATCTCAAGTGTTTAGCAGAGAAACATAGATGGCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCTCTGGCTCAAAATCTCAAGTGTTTAGCAGAGAAACATAGATGGCA  400

seq1  GATGTTCTGCGCACGTCAGGCAGAGAAACTGTGAAACACATGAAAGGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGTTCTGCGCACGTCAGGCAGAGAAACTGTGAAACACATGAAAGGCTA  450

seq1  AGCCTGCTGCAGAGGTGAGGCCATCCATCGGGGAATGCGACCCCAGACCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTGCTGCAGAGGTGAGGCCATCCATCGGGGAATGCGACCCCAGACCC  500

seq1  TGGAAGGGCGAGAAGCCCTCTCCCTTCTCAAAAGAAAAGAGGGGTTTCCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGGGCGAGAAGCCCTCTCCCTTCTCAAAAGAAAAGAGGGGTTTCCA  550

seq1  GAGAGGACCCGCAGGAGCCTTCTTGTGTCAGTCAGTATGTATTTGGGATC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGGACCCGCAGGAGCCTTCTTGTGTCAGTCAGTATGTATTTGGGATC  600

seq1  ATACATGCCAGGGCACATGCGTGGAAGTCAGATGACAGACCGTGGAATTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATGCCAGGGCACATGCGTGGAAGTCAGATGACAGACCGTGGAATTT  650

seq1  GGTTTTATCTTTCTAACCTGTGAGTCCTAGGGATTGAACTCAGGTCATTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTATCTTTCTAACCTGTGAGTCCTAGGGATTGAACTCAGGTCATTA  700

seq1  GGCTTGGCAGCAAGCACCTTCACCTTTAGCCCTCTCGCTGGCCTTGCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGGCAGCAAGCACCTTCACCTTTAGCCCTCTCGCTGGCCTTGCCTT  750

seq1  TTT-ATTCTTTGGTTTTATTTTTTTCTATTCTAGTAACTTCTCTTATATT  799
      ||| ||||||||||||||||||||||||||||||||||||||| ||||||
seq2  TTTAATTCTTTGGTTTTATTTTTTTCTATTCTAGTAACTTCTC-TATATT  799

seq1  TATTGGTTTCCTT-CTCTGA-GGT-CATTTGGAAGGGTTTTTTCTCCTA-  845
      ||| ||||||||| |||||| ||| |||||||||||||||||||||||| 
seq2  TATGGGTTTCCTTCCTCTGACGGTCCATTTGGAAGGGTTTTTTCTCCTAT  849

seq1  TTTTTTTTCTAGTGTTTATTTTGCCTGCCTTGTAAATTGTATTTATCACC  895
      |||||||||||||| |||||||||| | | ||  ||||| ||||| ||||
seq2  TTTTTTTTCTAGTG-TTATTTTGCCCGGCCTGGTAATTGGATTTACCACC  898

seq1  TATCTTTAATATTTTTATTATA-TTTTCTCCTTTTTATTAGTGTATACTA  944
       |||||||||||||||||| || || ||||| || || ||  | ||||||
seq2  CATCTTTAATATTTTTATTTTACTTCTCTCC-TTATAATAACGGATACTA  947

seq1  CTTCAAAATA  954
      |||| |||||
seq2  CTTCCAAATA  957


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