BAC Information

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BAC

Clone NameB6Ng01-218N15
Chromosome4 (Build37)
Map Location 28,505,504 - 28,639,825
singlet/doubletdoublet
Overlap geneLOC100040773
Upstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044, LOC665141
Downstream geneEpha7, LOC100040907, LOC100040811
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218N15.bB6Ng01-218N15.g
ACCGA034867GA034868
length1,1871,133
definitionB6Ng01-218N15.b B6Ng01-218N15.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,638,615 - 28,639,825)(28,505,504 - 28,506,646)
sequence
gaattcttttattttaaccttgtaattacttatttttacattttaaagac
agttaaaagtattttatagaaaccttactataaaatcctgtatactctct
gtatcctggcccacaattctagagtaagcccagttctctactgaagacca
tagtggtacctgagttcgagctaagacatatatgtagacattcaaagctt
ccacagagcctccccacctcccccaacagcattccatcctttcaatgcag
aattccagcagaagtcaactgttctgccagaggtcctactggtgttctga
accccagttaagatgcacctgcagacattcaattcttcctcagagcctgt
gaggttccccgacagtaccccctccacttgtctccatattccaacccaca
attattgcagaagcccctagaagcaacaggtatctagaacctccgaggcc
aagccaacacccagaagtccagattctcagaggcacctccagcacccaaa
gcatcagagttcattcataccaccaaaatctcagcagagacactctactg
aacataaggactcatggatcacttgaagtacaagactctcaggccagaag
atgagaaaggaaacagaaactaagtttaaaaaatatcattcaatagagat
aaactcagaaattgacacctaaacctgtaattactccaaatctatgggaa
gaaatgaataaacatttaaagaaagccaagagaaaaaaaaacacaaagaa
gtgaaggaataaataaaactgcttatcacttgaaaatgaaaatagagcaa
taaacaagtaagggtatccacattataaatcaaatattactaaagcttaa
atcattgaacccctcacattaatactaggagacttcaacacccactctca
ccaatgaacagttcatccagacaaaagacaaatagaaaaataatggacta
gtagatgttatgaatcaagcagacttaacatatatctgtagaaattacac
ccaaacacaaaagaatatacctttttttcagcactcacagaactgtctcc
aaaactggccacatactagtcacaagcagactaacatacattataatata
aataataatattataataactgctcatgaagtgcaactgtatcttatcga
tcacatggataaatctgaattttattagccaaacatg

gaattctagaaccagttgttgatatatttacattatcaaagcacagtgca
tataatttgggagcaagacaaatcacttgaaagaggctccgtattcttag
attctgtgaagtattttaatgccttatatctcgggatgttctattccaga
tttgcttcttagtattctatgcgagcatgtttttcccaggtctctttttc
tccatgactattaaaaaaaggacgaatgatttgagattctgaaacattta
aagctgtttaatctttgagcttgtccctgttatagtcaaagtcaagtatt
tcaaattctgaactggacttttatgatttctttgaaccctctcatgcctc
aggaggttccagacagtgctcatcaagatatttagaatcaagaattccta
agccatcatttgtattctgtatacagacctgcgccattgtttaaatttag
aagccacctctacctttatatgtgtgatgcttacttcaaaatgacattta
aacattgactttaaaatagatctacttcattttgccattgacctggtact
taataaagtcttaataaattctcaaactgtaagtaaaatgattcttgttg
aattggcgcatatagcagcatattgacagtctattctgcagtctctgctt
ctctgttggacccagggagctagagaacatgagcttaaaattaatatact
aaggttattattgtcataattttcttggtagaattaaaaaattgctttct
cgtttatgtatgtgccactcttggaaggaaataaattacaataaattaaa
aatattattctttctgtttctacttgataattaagtgtgtttaattataa
ttaatttttaaagatagccattatggaagagtaattaattatttcacatc
atgccagacttgactataaataagatattaaaaaatgaaaatgttatgtt
caagtaaatatttcccagactttaaataatttatcctccacaatgggcaa
actgcagaaaaaatgattcatcttcatatggtacctaacacaaaataaat
atgagtaatattattattcttgataacatttattacagtcttaatattta
ctgaatgaatatatttctaaatttctgaatgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_28638615_28639825
seq2: B6Ng01-218N15.b_47_1233 (reverse)

seq1  CATGTT--GCTATTAAAATTCAGATTTAATCCATGGTGATCTGATAAGAT  48
      ||||||  |||| |||||||||||||| |||||| |||||| ||||||||
seq2  CATGTTTGGCTAATAAAATTCAGATTT-ATCCAT-GTGATC-GATAAGAT  47

seq1  ACAGTTGGCTACTTTCATGAGGCATGTTATTTATTTATTTATTTATTTAT  98
      |||||||   || ||||||| ||| ||||||           | || |  
seq2  ACAGTTG--CAC-TTCATGA-GCA-GTTATT----------ATAATATTA  82

seq1  TTATTTATTTATTTATTGTATGTTAAGTCTTGCTTTGTGACTTAGTATGT  148
      |||||||| | | || |||||||| |||| ||| ||||||| ||||||||
seq2  TTATTTATAT-TATAATGTATGTT-AGTC-TGC-TTGTGAC-TAGTATGT  127

seq1  GGCCAGTTTTGGAGACAGTTCTGTGAGGTGCTGAAAAAAAGGTATATTCT  198
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GGCCAGTTTTGGAGACAGTTCTGTGA-GTGCTGAAAAAAAGGTATATTCT  176

seq1  TTTGTGTTTGGGTGTAATTTTCTACAGATATATGTTAAGTCTGCTTGATT  248
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTGTGTTTGGGTGTAA-TTTCTACAGATATATGTTAAGTCTGCTTGATT  225

seq1  CATAACATCTACTAGTCCATTATTTTTCTATTTTGTCTTTTGTCTGGATG  298
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  CATAACATCTACTAGTCCATTATTTTTCTA-TTTGTCTTTTGTCTGGATG  274

seq1  AACTGTTCATTGGTGAGAGTGGGTGTTGAAGTCTCCTAGTATTAATGTGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTGTTCATTGGTGAGAGTGGGTGTTGAAGTCTCCTAGTATTAATGTGA  324

seq1  GGGGTTCAATGATTTAAGCTTTAGTAATATTTGATTTATAATGTGGATAC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGTTCAATGATTTAAGCTTTAGTAATATTTGATTTATAATGTGGATAC  374

seq1  CCTTACTTGTTTATTGCTCTATTTTCATTTTCAAGTGATAAGCAGTTTTA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTACTTGTTTATTGCTCTATTTTCATTTTCAAGTGATAAGCAGTTTTA  424

seq1  TTTATTCCTTCACTTCTTTGTGTTTTTTTTTCTCTTGGCTTTCTTTAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTCCTTCACTTCTTTGTGTTTTTTTTTCTCTTGGCTTTCTTTAAAT  474

seq1  GTTTATTCATTTCTTCCCATAGATTTGGAGTAATTACAGGTTTAGGTGTC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTATTCATTTCTTCCCATAGATTTGGAGTAATTACAGGTTTAGGTGTC  524

seq1  AATTTCTGAGTTTATCTCTATTGAATGATATTTTTTAAACTTAGTTTCTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTCTGAGTTTATCTCTATTGAATGATATTTTTTAAACTTAGTTTCTG  574

seq1  TTTCCTTTCTCATCTTCTGGCCTGAGAGTCTTGTACTTCAAGTGATCCAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCTTTCTCATCTTCTGGCCTGAGAGTCTTGTACTTCAAGTGATCCAT  624

seq1  GAGTCCTTATGTTCAGTAGAGTGTCTCTGCTGAGATTTTGGTGGTATGAA  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCCTTATGTTCAGTAGAGTGTCTCTGCTGAGATTTTGGTGGTATGAA  674

seq1  TGAACTCTGATGCTTTGGGTGCTGGAGGTGCCTCTGAGAATCTGGACTTC  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTCTGATGCTTTGGGTGCTGGAGGTGCCTCTGAGAATCTGGACTTC  724

seq1  TGGGTGTTGGCTTGGCCTCGGAGGTTCTAGATACCTGTTGCTTCTAGGGG  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGTGTTGGCTTGGCCTCGGAGGTTCTAGATACCTGTTGCTTCTAGGGG  774

seq1  CTTCTGCAATAATTGTGGGTTGGAATATGGAGACAAGTGGAGGGGGTACT  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGCAATAATTGTGGGTTGGAATATGGAGACAAGTGGAGGGGGTACT  824

seq1  GTCGGGGAACCTCACAGGCTCTGAGGAAGAATTGAATGTCTGCAGGTGCA  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCGGGGAACCTCACAGGCTCTGAGGAAGAATTGAATGTCTGCAGGTGCA  874

seq1  TCTTAACTGGGGTTCAGAACACCAGTAGGACCTCTGGCAGAACAGTTGAC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAACTGGGGTTCAGAACACCAGTAGGACCTCTGGCAGAACAGTTGAC  924

seq1  TTCTGCTGGAATTCTGCATTGAAAGGATGGAATGCTGTTGGGGGAGGTGG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCTGGAATTCTGCATTGAAAGGATGGAATGCTGTTGGGGGAGGTGG  974

seq1  GGAGGCTCTGTGGAAGCTTTGAATGTCTACATATATGTCTTAGCTCGAAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCTCTGTGGAAGCTTTGAATGTCTACATATATGTCTTAGCTCGAAC  1024

seq1  TCAGGTACCACTATGGTCTTCAGTAGAGAACTGGGCTTACTCTAGAATTG  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTACCACTATGGTCTTCAGTAGAGAACTGGGCTTACTCTAGAATTG  1074

seq1  TGGGCCAGGATACAGAGAGTATACAGGATTTTATAGTAAGGTTTCTATAA  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGCCAGGATACAGAGAGTATACAGGATTTTATAGTAAGGTTTCTATAA  1124

seq1  AATACTTTTAACTGTCTTTAAAATGTAAAAATAAGTAATTACAAGGTTAA  1198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATACTTTTAACTGTCTTTAAAATGTAAAAATAAGTAATTACAAGGTTAA  1174

seq1  AATAAAAGAATTC  1211
      |||||||||||||
seq2  AATAAAAGAATTC  1187


seq1: chr4_28505504_28506646
seq2: B6Ng01-218N15.g_67_1199

seq1  GAATTCTAGAACCAGTTGTTGATATATTTACATTATCAAAGCACAGTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTAGAACCAGTTGTTGATATATTTACATTATCAAAGCACAGTGCA  50

seq1  TATAATTTGGGAGCAAGACAAATCACTTGAAAGAGGCTCCGTATTCTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATTTGGGAGCAAGACAAATCACTTGAAAGAGGCTCCGTATTCTTAG  100

seq1  ATTCTGTGAAGTATTTTAATGCCTTATATCTCGGGATGTTCTATTCCAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTGTGAAGTATTTTAATGCCTTATATCTCGGGATGTTCTATTCCAGA  150

seq1  TTTGCTTCTTAGTATTCTATGCGAGCATGTTTTTCCCAGGTCTCTTTTTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTTCTTAGTATTCTATGCGAGCATGTTTTTCCCAGGTCTCTTTTTC  200

seq1  TCCATGACTATTAAAAAAAGGACGAATGATTTGAGATTCTGAAACATTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATGACTATTAAAAAAAGGACGAATGATTTGAGATTCTGAAACATTTA  250

seq1  AAGCTGTTTAATCTTTGAGCTTGTCCCTGTTATAGTCAAAGTCAAGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCTGTTTAATCTTTGAGCTTGTCCCTGTTATAGTCAAAGTCAAGTATT  300

seq1  TCAAATTCTGAACTGGACTTTTATGATTTCTTTGAACCCTCTCATGCCTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCTGAACTGGACTTTTATGATTTCTTTGAACCCTCTCATGCCTC  350

seq1  AGGAGGTTCCAGACAGTGCTCATCAAGATATTTAGAATCAAGAATTCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGGTTCCAGACAGTGCTCATCAAGATATTTAGAATCAAGAATTCCTA  400

seq1  AGCCATCATTTGTATTCTGTATACAGACCTGCGCCATTGTTTAAATTTAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCATCATTTGTATTCTGTATACAGACCTGCGCCATTGTTTAAATTTAG  450

seq1  AAGCCACCTCTACCTTTATATGTGTGATGCTTACTTCAAAATGACATTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCACCTCTACCTTTATATGTGTGATGCTTACTTCAAAATGACATTTA  500

seq1  AACATTGACTTTAAAATAGATCTACTTCATTTTGCCATTGACCTGGTACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTGACTTTAAAATAGATCTACTTCATTTTGCCATTGACCTGGTACT  550

seq1  TAATAAAGTCTTAATAAATTCTCAAACTGTAAGTAAAATGATTCTTGTTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAGTCTTAATAAATTCTCAAACTGTAAGTAAAATGATTCTTGTTG  600

seq1  AATTGGCGCATATAGCAGCATATTGACAGTCTATTCTGCAGTCTCTGCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGGCGCATATAGCAGCATATTGACAGTCTATTCTGCAGTCTCTGCTT  650

seq1  CTCTGTTGGACCCAGGGAGCTAGAGAACATGAGCTTAAAATTAATATACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTTGGACCCAGGGAGCTAGAGAACATGAGCTTAAAATTAATATACT  700

seq1  AAGGTTATTATTGTCATAATTTTCTTGGTAGAATTAAAAAATTGCTTTCT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTTATTATTGTCATAATTTTCTTGGTAGAATTAAAAAATTGCTTTCT  750

seq1  CGTTTATGTATGTGCCACTCTTGGAAGGAAATAAATTACAATAAATTAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTTATGTATGTGCCACTCTTGGAAGGAAATAAATTACAATAAATTAAA  800

seq1  AATATTATTCTTTCTGTTTCTACTTGATAATTAAGTGTGTTTAATTATAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATTATTCTTTCTGTTTCTACTTGATAATTAAGTGTGTTTAATTATAA  850

seq1  TTAATTTTTAAAGATAGCCATTATGGAAGAGTAATTAATTATTTCACATC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTTTTAAAGATAGCCATTATGGAAGAGTAATTAATTATTTCACATC  900

seq1  ATGCCAGACTTGACTATAAAATAAGATATTAAAAAATGAAAATGTTATGT  950
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  ATGCCAGACTTGACTAT-AAATAAGATATTAAAAAATGAAAATGTTATGT  949

seq1  TCAAGTAAATATTTCCCAGACTTTAAATAATTTTATCCTCCACAAT-GGC  999
      |||||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TCAAGTAAATATTTCCCAGACTTTAAATAA-TTTATCCTCCACAATGGGC  998

seq1  AAACTGCAG-AAAAATGATTCATCTTCAATATGGTACCCTAACACAAAAT  1048
      ||||||||| ||||||||||||||||| |||||||| |||||||||||||
seq2  AAACTGCAGAAAAAATGATTCATCTTC-ATATGGTA-CCTAACACAAAAT  1046

seq1  TAAAATTATTGAGGTAAATATTATTATTTCTGATTAACATTTTATACAGT  1098
       || || | |      ||||||||||||  ||| ||||||||  ||||||
seq2  AAATATGAGT------AATATTATTATTCTTGA-TAACATTTATTACAGT  1089

seq1  CTTTAATATTTACTG-ATGAATATATTTCTAAAATTTCTGAATGAA  1143
      | ||||||||||||| |||||||||||||| |||||||||||||||
seq2  C-TTAATATTTACTGAATGAATATATTTCT-AAATTTCTGAATGAA  1133


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