BAC Information

Click to search

BAC

Clone NameB6Ng01-218P20
Chromosome7 (Build37)4 (Build37)
Map Location 9,370,620 - 9,371,76037,541,704 - 37,541,776
singlet/doubletsingletsinglet
Overlap geneEG665552
Upstream geneLOC100041956, LOC100041961, LOC100042703, LOC100041967, LOC100042724, LOC100041977, LOC100041983, LOC100041989, LOC100041998, LOC100042009, LOC100042754, V2r14, EG628128, EG434109, LOC434110, EG628145, EG545909, LOC100042039, LOC100042781, LOC665539, LOC100042795, LOC100042060
Downstream geneLOC100042790, LOC100042803, LOC665598, LOC100042810, LOC665593, EG665582, EG434113, EG665577, LOC665571, LOC100042083, Gm1961, V2r4, LOC100042848, LOC100042096, LOC100042870, LOC100042105, LOC100042859, LOC100042113, LOC100042120, LOC100042126, LOC100042139, LOC100042894
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-218P20.bB6Ng01-218P20.g
ACCGA034961GA034962
length1,123815
definitionB6Ng01-218P20.b B6Ng01-218P20.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(9,370,620 - 9,371,760)(37,541,704 - 37,541,776)
sequence
gaattcttcaaatcatcaattaactttaaacaatctaatatttatccagc
tttttccaatatgtgaagccactatagagcattttgacgtcatggaatac
tccatattcaaggtcgctacggattaatttatcatctccaaccatattaa
accagtgtctgcatactccactatttttatatacattttctcttgctttg
caacagtaatttatttgaggtcatatttgttatctgtgactgaaggatat
attttttcctattacaaatttcttcaaatactaacttgcttctctgttga
tttaattaaactttgataataaggaaagtgaggaggaaggtgtgacttga
catatgccttatagttatagaaagacgggtgtggatatcaggaaaagaac
taaagaatagatttttttctttatgataaggcaaggcaaaatcttttaat
atcagtttcccagaacatttttctgattctcccattagtggaaaaactgc
caacattactttaggctgttttttttttttccaagagatcttaaaagaac
actacttactggatcaactgtccacagtaagatgggcattcttatatcaa
ttaccaaagaagaaaatgcttcaaagatatgaggacaggctagtgttggc
tgagaaaatatttcaattaagtttcctctttccatagcacttagtaccaa
gttgaaaatacttaactaaaaaacatccggttgcaacttctgtagttttc
acatacagctcaatatcagctctttttcctaaattactagacactcagat
aatatgcaacatttcttcaatgcatttccaatattcagttctggccatta
aataatggacattgtaaaatgtcaatcatgggcctggtggtggtggcaca
cacctttaatcccaggacttgggaggcagaggcaggtggatttctgagtt
tgaggccagaactggtctacaaagtgagttccaggacagccagggctaca
cagagaaacctgcctcaaaacacacctcacaaaagaaccaaacaatatgt
tcatcgattgtgtgatgcatgagctatgatctaaggctaaccaaacctta
aggacgtcctaatcgttaccaat
gaattctcacctgaggaatactgaatggctgagaaacacctaaaaaaatg
ttcagcatccttaaacatcaggaaaatgcaaatccaaacaaccctgagat
ttcatctcacaccagtcagaatggctaagaccaaaaattgaagtgacagc
agatgctggcaaggatgtggagaaagaggaacactcctccattgttggtg
agattgcaagcttgcacaaccactctggaaatcagtctgacagttcttca
gaaaattggacatggtactactagaggatcccgcaatacctctcctgggc
atatatccagaagatgttccaactagtaagaaatacacatgctccattat
gttcatagcagccttatttataataaccagaaactggaaagaacccagat
gtttgtcaaccgaggaatggatacaaaaaatgtggtacatttacacaata
gagtactactcaggtattaaaaacaatgaatttatgaaattcctaggcaa
atggtggactagtagggcattatcctgagttaggtaaaccaatcacaaaa
gaactcacacaatatgttactcactgataagtggatattagcccagaaac
ttagaacacccaagatacaagttacaattttcaaaacacatgaaaactga
agaagtactaagaccaaaagtgtggacacttttgcctcttctttagaaat
cggaacgaaacacccatggaaggagatacagagacaaagtttggagtgga
gacaaaaaggatggaccatctagagactgccatatccaaggatccatccc
atatcagcctccaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr7_9370620_9371760
seq2: B6Ng01-218P20.b_44_1166

seq1  GAATTCTTCAAATCATCAATTAACTTTAAACAATCTAATATTTATCCAGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTCAAATCATCAATTAACTTTAAACAATCTAATATTTATCCAGC  50

seq1  TTTTTCCAATATGTGAAGCCACTATAGAGCATTTTGACGTCATGGAATAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCAATATGTGAAGCCACTATAGAGCATTTTGACGTCATGGAATAC  100

seq1  TCCATATTCAAGGTCGCTACGGATTAATTTATCATCTCCAACCATATTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATATTCAAGGTCGCTACGGATTAATTTATCATCTCCAACCATATTAA  150

seq1  ACCAGTGTCTGCATACTCCACTATTTTTATATACATTTTCTCTTGCTTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGTGTCTGCATACTCCACTATTTTTATATACATTTTCTCTTGCTTTG  200

seq1  CAACAGTAATTTATTTGAGGTCATATTTGTTATCTGTGACTGAAGGATAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTAATTTATTTGAGGTCATATTTGTTATCTGTGACTGAAGGATAT  250

seq1  ATTTTTTCCTATTACAAATTTCTTCAAATACTAACTTGCTTCTCTGTTGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTCCTATTACAAATTTCTTCAAATACTAACTTGCTTCTCTGTTGA  300

seq1  TTTAATTAAACTTTGATAATAAGGAAAGTGAGGAGGAAGGTGTGACTTGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATTAAACTTTGATAATAAGGAAAGTGAGGAGGAAGGTGTGACTTGA  350

seq1  CATATGCCTTATAGTTATAGAAAGACGGGTGTGGATATCAGGAAAAGAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATGCCTTATAGTTATAGAAAGACGGGTGTGGATATCAGGAAAAGAAC  400

seq1  TAAAGAATAGATTTTTTTCTTTATGATAAGGCAAGGCAAAATCTTTTAAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAGAATAGATTTTTTTCTTTATGATAAGGCAAGGCAAAATCTTTTAAT  450

seq1  ATCAGTTTCCCAGAACATTTTTCTGATTCTCCCATTAGTGGAAAAACTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGTTTCCCAGAACATTTTTCTGATTCTCCCATTAGTGGAAAAACTGC  500

seq1  CAACATTACTTTAGGCTG-TTTTTTTTTTTCCAAGAGATCTTAAAAGAAC  549
      |||||||||||||||||| |||||||||||||||||||||||||||||||
seq2  CAACATTACTTTAGGCTGTTTTTTTTTTTTCCAAGAGATCTTAAAAGAAC  550

seq1  ACTACTTACTGGATCAACTGTCCACAGTAAGATGGGCATTCTTATATCAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTACTGGATCAACTGTCCACAGTAAGATGGGCATTCTTATATCAA  600

seq1  TTACCAAAGAAGAAAATGCTTCAAAGATATGAGGACAGGCTAGTGTTGGC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCAAAGAAGAAAATGCTTCAAAGATATGAGGACAGGCTAGTGTTGGC  650

seq1  TGAGAAAATATTTCAATTAAGTTTCCTCTTTCCATAGCACTTAGTACCAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGAAAATATTTCAATTAAGTTTCCTCTTTCCATAGCACTTAGTACCAA  700

seq1  GTTGAAAATACTTAACTAAAAAACATCCGGTTGCAACTTCTGTAGTTTTC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAAATACTTAACTAAAAAACATCCGGTTGCAACTTCTGTAGTTTTC  750

seq1  ACATACAGCTCAATATCAGCTCTTTTTCCTAAATTACTAGACACTCAGAT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATACAGCTCAATATCAGCTCTTTTTCCTAAATTACTAGACACTCAGAT  800

seq1  AATATGCAACATTTCTTCAATGCATTTCCAATATTCAGTTCTGGCCATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGCAACATTTCTTCAATGCATTTCCAATATTCAGTTCTGGCCATTA  850

seq1  AATAATGGACATTGTAAAATGTCAATCAGGGGCCTGGTGGTGGTGGCACA  899
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  AATAATGGACATTGTAAAATGTCAATCATGGGCCTGGTGGTGGTGGCACA  900

seq1  CACCTTTAATCCCAGGACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTTAATCCCAGGACTTGGGAGGCAGAGGCAGGTGGATTTCTGAGTT  950

seq1  TGAGGCCAG-ACTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACA  998
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGCCAGAACTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACA  1000

seq1  CAGAGAAACCCTGCCTCAAAACACA-CTCACAAAAAAGACCAAACAAATA  1047
      |||||||| |||||||||||||||| ||||||||| | ||||||||   |
seq2  CAGAGAAA-CCTGCCTCAAAACACACCTCACAAAAGA-ACCAAACA---A  1045

seq1  AATGTCAATCAGATTGTGTGAATGAAATGAGCTTATTGAAATCTTAAAGT  1097
       ||||  ||| ||||||||| |||  |||||| |||    ||||  ||| 
seq2  TATGTTCATC-GATTGTGTG-ATG-CATGAGC-TAT---GATCT--AAG-  1085

seq1  GCTAATCTAAAACATAAAAGAACCTTCTAAAATTCGTTACCAAT  1141
      ||||| |  |||| |  ||| || | ||||   |||||||||||
seq2  GCTAACC--AAACCT-TAAGGACGTCCTAA---TCGTTACCAAT  1123

seq1: chr4_37541704_37541776
seq2: B6Ng01-218P20.g_822_879 (reverse)

seq1  TTTGGAGGCTAATTATGGGATGGATCCCTGGATATGGCAGTCTCTAGATG  50
      |||||||||| | |||||||||||||| ||||||||||            
seq2  TTTGGAGGCTGA-TATGGGATGGATCCTTGGATATGGC------------  37

seq1  GGAGTCTCTAGATGGTCCATCCT  73
        |||||||||||||||||||||
seq2  --AGTCTCTAGATGGTCCATCCT  58