BAC Information

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BAC

Clone NameB6Ng01-219I24
Chromosome4 (Build37)
Map Location 122,912,367 - 123,058,002
singlet/doubletdoublet
Overlap geneHeyl, LOC194197, LOC622334, Pabpc4, Bmp8a, Oxct2a, Macf1
Upstream geneLOC633269, LOC633279, 9530002B09Rik, Ppt1, Cap1, Mfsd2, Mycl1, Trit1, Bmp8b, Oxct2b, Ppie, Hpcal4, Nt5c1a
Downstream geneD830031N03Rik, LOC100039110, Ndufs5, 6330407G11Rik, Rhbdl2, LOC667064, Mycbp, Rragc
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219I24.bB6Ng01-219I24.g
ACCGA035361GA035362
length1,138743
definitionB6Ng01-219I24.b B6Ng01-219I24.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(122,912,367 - 122,913,486)(123,057,272 - 123,058,002)
sequence
gaattcactctgtaggctgagctgaccacgaactcagagatccacttgtc
tctgcctctcaactgctgggattaaggctcgtaccaccaccacacatcta
acttttttttaagaggctacagctaggcatggggacatatgcctttaatc
ctaacactcagaaggcagaggcaggaagatctctataagtagctagagct
aacttttgacttagtgagaccctatctaaaaaagggcagagtcagtctct
ctctctctctctctctctctctctctctctctcatcctcaaatcttacat
gttaggtctggggatgtataatatagttccttatgtaaatcctttaaaaa
ttacttagcagaaactgctacttaagagaaataattctcaaagcctgttt
ctgccgccatgaggggcctagcaccacacggtcatggcaaacggaggatc
tcaaattcaatgctattgggtcttcaagaaccagagtacagactcaatgg
cagagagctgaggtggatcagactggcttctatccttcatgagtatacag
ccagaaaagtaactgccaagggatgtggcgactctgaacacagtggaaga
atctggggaggggccactcacagccatgggtgatgataacagtttcctga
tggcggtagcattagggctaaggtgtaaaggtcactgcaggattccccct
tatatctctttttgtcatttttagccagagtccattgttagggtctgggt
ctagacagaagaccagaccgctccaaggagggaaagctgctggacatctg
gccgtctgacttatagatgcctctttgttagcacttttgcaaagggccct
ccccccagcagacataaaatgctttcaatttcagagaccgctgaacgatg
cctgctgtggcctagaccccgggactgggcatccaagcccagatgggatc
ttgcccagccttctgccctcaggtaattcttcagagaagaagagttgcat
gtacaaagaaagccagataaactgtggcaggccgtagggttagggccagc
cagactctgggggggtcagaagcagcacacatttccttcacgcctccaaa
gccttcagaacccaaaggggcataggtgtgtttctgat
gaattctgggtttaatttactaacagctcatacttggaactgaagctaaa
agggacttatataaagacaaggcctttctggacctttccagactgtacta
gtgaaatatgtgtgtatggggtctttcaggaaatagatattattgatata
ttttgctaccttcttttgtaggaactacattcccagctgagagccaagga
agagatttacaatcagttgcttgacaagggcaggcttatgctcctcagcc
gtggtgactctgggtctggctcaaaaacagagcagagtgtagcgctcttg
gaacagaagtggcatgcggtcagcagtaaggtggaagagagaaaggtacc
gctgcagagcactgtctgagcagtgtgttcagtgacctgtgacatcactg
tcttcatttttgtagatgggtgtgttgtgatatgtcagagaacttatctc
ataatggactttatattaatctatctgacagtaatctttagtttgtgttc
ctacttacaaagttttgctggagtttataacattgaattaagaagatggg
gacagggcaatgtaagaaatgtgaccagcaattttctttttaaggaattt
tactgaagatcagaagaaaaagtaaaattatgagctcttccccactagtt
ctcagaatattggattttcttcttttataagagcaaaaagagggtgatat
gaaactcaaatgtttttttgtttttttgttttggttttttttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_122912367_122913486
seq2: B6Ng01-219I24.b_47_1184

seq1  GAATTCACTCTGTAGGCTGAGCTGACCACGAACTCAGAGATCCACTTGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTGTAGGCTGAGCTGACCACGAACTCAGAGATCCACTTGTC  50

seq1  TCTGCCTCTCAACTGCTGGGATTAAGGCTCGTACCACCACCACACATCTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCCTCTCAACTGCTGGGATTAAGGCTCGTACCACCACCACACATCTA  100

seq1  ACTTTTTTTTAAGAGGCTACAGCTAGGCATGGGGACATATGCCTTTAATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTTTTAAGAGGCTACAGCTAGGCATGGGGACATATGCCTTTAATC  150

seq1  CTAACACTCAGAAGGCAGAGGCAGGAAGATCTCTATAAGTAGCTAGAGCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACACTCAGAAGGCAGAGGCAGGAAGATCTCTATAAGTAGCTAGAGCT  200

seq1  AACTTTTGACTTAGTGAGACCCTATCTAAAAAAGGGCAGAGTCAGTCTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTTTGACTTAGTGAGACCCTATCTAAAAAAGGGCAGAGTCAGTCTCT  250

seq1  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCCTCAAATCTTACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATCCTCAAATCTTACAT  300

seq1  GTTAGGTCTGGGGATGTATAATATAGTTCCTTATGTAAATCCTTTAAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGGTCTGGGGATGTATAATATAGTTCCTTATGTAAATCCTTTAAAAA  350

seq1  TTACTTAGCAGAAACTGCTACTTAAGAGAAATAATTCTCAAAGCCTGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTTAGCAGAAACTGCTACTTAAGAGAAATAATTCTCAAAGCCTGTTT  400

seq1  CTGCCGCCATGAGGGGCCTAGCACCACACGGTCATGGCAAACGGAGGATC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGCCATGAGGGGCCTAGCACCACACGGTCATGGCAAACGGAGGATC  450

seq1  TCAAATTCAATGCTATTGGGTCTTCAAGAACCAGAGTACAGACTCAATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAATTCAATGCTATTGGGTCTTCAAGAACCAGAGTACAGACTCAATGG  500

seq1  CAGAGAGCTGAGGTGGATCAGACTGGCTTCTATCCTTCATGAGTATACAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGAGCTGAGGTGGATCAGACTGGCTTCTATCCTTCATGAGTATACAG  550

seq1  CCAGAAAAGTAACTGCCAAGGGATGTGGCGACTCTGAACACAGTGGAAGA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAGTAACTGCCAAGGGATGTGGCGACTCTGAACACAGTGGAAGA  600

seq1  ATCTGGGGAGGGGCCACTCACAGCCATGGGTGATGATAACAGTTTCCTGA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGGGGAGGGGCCACTCACAGCCATGGGTGATGATAACAGTTTCCTGA  650

seq1  TGGCGGTAGCATTAGGGCTAAGGTGTAAAGGTCACTGCAGGATTCCCCCT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCGGTAGCATTAGGGCTAAGGTGTAAAGGTCACTGCAGGATTCCCCCT  700

seq1  TATATCTCTTTTTGTCATTTTTAGCCAGAGTCCATTGTTAGGGTCT-GGT  749
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  TATATCTCTTTTTGTCATTTTTAGCCAGAGTCCATTGTTAGGGTCTGGGT  750

seq1  CTAGACAGAAGACCAGACCGCTCCAAGGAGGGAAAGCTGCTGGACATCTG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGACAGAAGACCAGACCGCTCCAAGGAGGGAAAGCTGCTGGACATCTG  800

seq1  GCCGTCTGACTTATAGATGCCTCTTTG-TAGCAC-TTTGCAAAGGGCCCT  847
      ||||||||||||||||||||||||||| |||||| |||||||||||||||
seq2  GCCGTCTGACTTATAGATGCCTCTTTGTTAGCACTTTTGCAAAGGGCCCT  850

seq1  CCCCCCAGCAGACAT-AAATGC-TTCAA-TTCAGAGACCGCTGAACGATG  894
      ||||||||||||||| |||||| ||||| |||||||||||||||||||||
seq2  CCCCCCAGCAGACATAAAATGCTTTCAATTTCAGAGACCGCTGAACGATG  900

seq1  CCTGCTGTGGCCTAGACCCC-GGACTGGGCATCCAAGCCCAGAT-GGATC  942
      |||||||||||||||||||| ||||||||||||||||||||||| |||||
seq2  CCTGCTGTGGCCTAGACCCCGGGACTGGGCATCCAAGCCCAGATGGGATC  950

seq1  CTGCCCAGCC-TCTGCCCTCAGGGAATTC-TCAGAGAAGAAGAGTTGCAT  990
       ||||||||| |||||||||||| ||||| ||||||||||||||||||||
seq2  TTGCCCAGCCTTCTGCCCTCAGGTAATTCTTCAGAGAAGAAGAGTTGCAT  1000

seq1  GTACAAAGAAAGCCAGATAAACTGTGGCAGGGGCCGTAGGGTTAGGG-CA  1039
      |||||||||||||||||||||||||||||  |||||||||||||||| ||
seq2  GTACAAAGAAAGCCAGATAAACTGTGGCA--GGCCGTAGGGTTAGGGCCA  1048

seq1  GCCAGACTCT--GGGGGTCAGAAGCAGCACACAATTCC-TCACGC--TCA  1084
      ||||||||||  ||||||||||||||||||||| |||| ||||||   ||
seq2  GCCAGACTCTGGGGGGGTCAGAAGCAGCACACATTTCCTTCACGCCTCCA  1098

seq1  GAGCTTCAAGA--CCAAAGGGGCATA-GTGTG-TTCTGAT  1120
       ||| |  |||  ||||||||||||| ||||| |||||||
seq2  AAGCCTTCAGAACCCAAAGGGGCATAGGTGTGTTTCTGAT  1138

seq1: chr4_123057272_123058002
seq2: B6Ng01-219I24.g_71_813 (reverse)

seq1  AAAAAAAAAACAAAAC-AAAAAACAAAAAACC--TTGAG-TTCATATC-C  45
      ||||||||| |||||| ||||||||||||| |  ||||| |||||||| |
seq2  AAAAAAAAACCAAAACAAAAAAACAAAAAAACATTTGAGTTTCATATCAC  50

seq1  CCTC-TTTTGCTCTTAT-AAAGAAGAAAATCCAAT-TTCTGAGAACTAGT  92
      |||| |||||||||||| ||||||||||||||||| ||||||||||||||
seq2  CCTCTTTTTGCTCTTATAAAAGAAGAAAATCCAATATTCTGAGAACTAGT  100

seq1  -GGGAAGAGCTCATAA-TTTAC-TTTTCTTCTGATCTTCAGTAAAATTCC  139
       ||||||||||||||| ||||| |||||||||||||||||||||||||||
seq2  GGGGAAGAGCTCATAATTTTACTTTTTCTTCTGATCTTCAGTAAAATTCC  150

seq1  TT-AAAAGAAAATTGCTGGTCACATTTCTTACATTGCCCTGTCCCCATCT  188
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAAGAAAATTGCTGGTCACATTTCTTACATTGCCCTGTCCCCATCT  200

seq1  TCTTAATTCAATGTTATAAACTCCAGCAAAACTTTGTAAGTAGGAACACA  238
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAATTCAATGTTATAAACTCCAGCAAAACTTTGTAAGTAGGAACACA  250

seq1  AACTAAAGATTACTGTCAGATAGATTAATATAAAGTCCATTATGAGATAA  288
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAAGATTACTGTCAGATAGATTAATATAAAGTCCATTATGAGATAA  300

seq1  GTTCTCTGACATATCACAACACACCCATCTACAAAAATGAAGACAGTGAT  338
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCTCTGACATATCACAACACACCCATCTACAAAAATGAAGACAGTGAT  350

seq1  GTCACAGGTCACTGAACACACTGCTCAGACAGTGCTCTGCAGCGGTACCT  388
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACAGGTCACTGAACACACTGCTCAGACAGTGCTCTGCAGCGGTACCT  400

seq1  TTCTCTCTTCCACCTTACTGCTGACCGCATGCCACTTCTGTTCCAAGAGC  438
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTCTTCCACCTTACTGCTGACCGCATGCCACTTCTGTTCCAAGAGC  450

seq1  GCTACACTCTGCTCTGTTTTTGAGCCAGACCCAGAGTCACCACGGCTGAG  488
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACACTCTGCTCTGTTTTTGAGCCAGACCCAGAGTCACCACGGCTGAG  500

seq1  GAGCATAAGCCTGCCCTTGTCAAGCAACTGATTGTAAATCTCTTCCTTGG  538
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATAAGCCTGCCCTTGTCAAGCAACTGATTGTAAATCTCTTCCTTGG  550

seq1  CTCTCAGCTGGGAATGTAGTTCCTACAAAAGAAGGTAGCAAAATATATCA  588
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAGCTGGGAATGTAGTTCCTACAAAAGAAGGTAGCAAAATATATCA  600

seq1  ATAATATCTATTTCCTGAAAGACCCCATACACACATATTTCACTAGTACA  638
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATATCTATTTCCTGAAAGACCCCATACACACATATTTCACTAGTACA  650

seq1  GTCTGGAAAGGTCCAGAAAGGCCTTGTCTTTATATAAGTCCCTTTTAGCT  688
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTGGAAAGGTCCAGAAAGGCCTTGTCTTTATATAAGTCCCTTTTAGCT  700

seq1  TCAGTTCCAAGTATGAGCTGTTAGTAAATTAAACCCAGAATTC  731
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTTCCAAGTATGAGCTGTTAGTAAATTAAACCCAGAATTC  743