BAC Information

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BAC

Clone NameB6Ng01-219J20
Chromosome4 (Build37)
Map Location 131,409,278 - 131,563,898
singlet/doubletdoublet
Overlap geneMecr, Sfrs4, EG664865, EG623230, Epb4.1
Upstream geneLaptm5, Matn1, LOC622681, LOC100041575, Gm831, EG664832, LOC100039799, Ptpru
Downstream geneLOC666480, LOC100039835, Oprd1, LOC664894, Ythdf2, LOC664903, Gmeb1, Rnu11, Taf12, 9530096D07Rik, LOC100039864, Trspap1, Rcc1, Snhg3, Phactr4, Med18, Sesn2, Atpif1, Dnajc8, Ptafr, Eya3, Xkr8, Smpdl3b, Rpa2, BC013712, LOC100039917, Ppp1r8, Stx12, OTTMUSG00000010099, BC008163, Fgr
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-219J20.bB6Ng01-219J20.g
ACCGA035400GA035401
length862887
definitionB6Ng01-219J20.b B6Ng01-219J20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(131,409,278 - 131,410,132)(131,563,008 - 131,563,898)
sequence
gaattccaggacagccagggctacacagagaaaccctgtctcaaaaaaca
aaaaaaaaaaaaaaaaaaaaaaaatagtgcaccacatgatttttagaacc
aagcaggttgtggagaacctaaggccaggccagcagaggctcactagtgc
ttctgttcctgacactaagaggataccaagattgatccattgcagttggt
gtgagcctgcactctgtgctggtcctcaaagcacctcctttccatcagaa
ccagattcctaggcacacggcaattgaggcatgttgctgacctactctgg
ggagacagtttgagcagaagtcttagctactgacagtgtctttctgagct
taggctgaagaacctggagctcactgctgtggaaggatctgacgtccacg
tgaggatgctggcagcccctatcaatccatctgacataaatatgatccaa
ggtaaccttgctctctggagcttatgctaattggctcaggtagagtctga
agtgctcaggattagcagtggctgtcctctagaggagcagcatgcacagt
ctcgctcggctcctctctggccaacctctaactaagcatgacgctctgtg
agttaggtgaagtgtagtggtgggaggcccaccctttctgaagagcttgt
gacatgctagactccttttctttacttgagtgtgtcctttgtggtaatcc
tgtgcccaaagagtttttagctcctacatagttaaaggaagcaaaaggcc
agagcttggttaattggacagctcatgagaacagggtcccgataactcaa
atgtgagcgaacacaaagtctattgccctccagagtctcaaccgaaactt
gacagtgtgact
gaattcctgcaaatcttgcagctttgactgacatcttaaaaggacagtac
ccagataccctgtgtaggaagcatgaaggtgtatttgctatgtacagttc
tgagcctttaattatggtgtatttcattacatggccttggtagatttttt
tttaaagatttattttatttatatgagtacactgtagctatcttcagaca
caccagaagagggcatcatactccattgcagatggttgtgagccaccatg
tggttgctgggaattgaactcaggacctctggaagaacagctgagccatc
tttccagccctagatattgttttaagctagtctctcaatatgcatatctt
tcatgacttaaggcactaataatttattcaggatgggtaggtaaattttt
tgtgctttaatgtaagatcttctgtttaatggattggaattctgttggtg
attaaatccaaatatattagctttttgaggtttaggggtttgcctggagc
attgttttgcttataatagttcccttttcttcttccttttaataggaaca
tcatgacaacagagaagagtttagcggctgaagctgagaattctcagcac
cagcaacagaaggaagaaggagagggagccacaaaactcaggccaacaag
aaactcagctggaggaggcctcccaagcggccgcagctgagggcagcgat
cagggtgagcagaagctgaaagcatccaatggggacactccaacacatga
agacttgaccaagaacaaggaacggacatcagaagcagaggcctgtcacg
actgctctcctcattcctcaaaaggccaagtcgcagtctctgaagaagat
gcagagagtaaaatcagagaaagagaaaggtgaaggg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_131409278_131410132
seq2: B6Ng01-219J20.b_45_906

seq1  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCTCAAAAAACA  50

seq1  AAAAAAAAAAAAAAAAAAAAAAAATAGTGCACCACATGATTTTTAGAACC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAAAAAAAAAAAAAATAGTGCACCACATGATTTTTAGAACC  100

seq1  AAGCAGGTTGTGGAGAACCTAAGGCCAGGCCAGCAGAGGCTCACTAGTGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGGTTGTGGAGAACCTAAGGCCAGGCCAGCAGAGGCTCACTAGTGC  150

seq1  TTCTGTTCCTGACACTAAGAGGATACCAAGATTGATCCATTGCAGTTGGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGTTCCTGACACTAAGAGGATACCAAGATTGATCCATTGCAGTTGGT  200

seq1  GTGAGCCTGCACTCTGTGCTGGTCCTCAAAGCACCTCCTTTCCATCAGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAGCCTGCACTCTGTGCTGGTCCTCAAAGCACCTCCTTTCCATCAGAA  250

seq1  CCAGATTCCTAGGCACACGGCAATTGAGGCATGTTGCTGACCTACTCTGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGATTCCTAGGCACACGGCAATTGAGGCATGTTGCTGACCTACTCTGG  300

seq1  GGAGACAGTTTGAGCAGAAGTCTTAGCTACTGACAGTGTCTTTCTGAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGACAGTTTGAGCAGAAGTCTTAGCTACTGACAGTGTCTTTCTGAGCT  350

seq1  TAGGCTGAAGAACCTGGAGCTCACTGCTGTGGAAGGATCTGACGTCCACG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGCTGAAGAACCTGGAGCTCACTGCTGTGGAAGGATCTGACGTCCACG  400

seq1  TGAGGATGCTGGCAGCCCCTATCAATCCATCTGACATAAATATGATCCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGATGCTGGCAGCCCCTATCAATCCATCTGACATAAATATGATCCAA  450

seq1  GGTAACCTTGCTCTCTGGAGCTTATGCTAATTGGCTCAGGTAGAGTCTGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTAACCTTGCTCTCTGGAGCTTATGCTAATTGGCTCAGGTAGAGTCTGA  500

seq1  AGTGCTCAGGATTAGCAGTGGCTGTCCTCTAGAGGAGCAGCATGCACAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGCTCAGGATTAGCAGTGGCTGTCCTCTAGAGGAGCAGCATGCACAGT  550

seq1  CTCGCTCGGCTCCTCTCTGGCCAACCTCTAACTAAGCATGACGCTCTGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCGCTCGGCTCCTCTCTGGCCAACCTCTAACTAAGCATGACGCTCTGTG  600

seq1  AGTTAGGTGAAGTGTAGTGGTGGGAGGCCCACCC-TTCTGAAGAGCCTGT  649
      |||||||||||||||||||||||||||||||||| ||||||||||| |||
seq2  AGTTAGGTGAAGTGTAGTGGTGGGAGGCCCACCCTTTCTGAAGAGCTTGT  650

seq1  GACATGCTAGACTCCTTT--CTTACTTGAGTGTGTCC-TTGTGGTAATCC  696
      ||||||||||||||||||   |||||||||||||||| ||||||||||||
seq2  GACATGCTAGACTCCTTTTCTTTACTTGAGTGTGTCCTTTGTGGTAATCC  700

seq1  TGTGCCCAAAGAG-TTTTAGCTCCTACATAGTT-AAGGAAGCAGAAGGCC  744
      ||||||||||||| ||||||||||||||||||| ||||||||| ||||||
seq2  TGTGCCCAAAGAGTTTTTAGCTCCTACATAGTTAAAGGAAGCAAAAGGCC  750

seq1  AGAGCTTGGTTAAGTGGACAGCTCATGAGAGCAGGGTCCCGATAAGCTCA  794
      ||||||||||||| |||||||||||||||| |||||||||||||| ||||
seq2  AGAGCTTGGTTAATTGGACAGCTCATGAGAACAGGGTCCCGATAA-CTCA  799

seq1  AATGTGAGCGAACACAAAGTCTA-TGCCCTCCAGAGTCTCAGCCG-AACC  842
      ||||||||||||||||||||||| ||||||||||||||||| ||| ||| 
seq2  AATGTGAGCGAACACAAAGTCTATTGCCCTCCAGAGTCTCAACCGAAACT  849

seq1  TGACAGTGTGACT  855
      |||||||||||||
seq2  TGACAGTGTGACT  862

seq1: chr4_131563008_131563898
seq2: B6Ng01-219J20.g_66_952 (reverse)

seq1  CCCTTCACCTTTCTCTTTCTCTGATTCTACTTCTCTGCCTTCTTCTTCAG  50
      |||||||||||||||||||||||||| ||| |||||| | ||||||||||
seq2  CCCTTCACCTTTCTCTTTCTCTGATTTTAC-TCTCTG-CATCTTCTTCAG  48

seq1  AGACCTGCGACTTGGGCCTTTTGAGGAATGAGGAGAGCAGTCGTGACAGG  100
      ||| ||||||||| ||||||||||||||||||||||||||||||||||||
seq2  AGA-CTGCGACTT-GGCCTTTTGAGGAATGAGGAGAGCAGTCGTGACAGG  96

seq1  CCTCTGCTTTCTGATGTCCGTTCCTTGTTCTTGGTCAAGTCTTCATGTGT  150
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGC-TTCTGATGTCCGTTCCTTGTTCTTGGTCAAGTCTTCATGTGT  145

seq1  TGGAGTGTCCCCATTGGATGCTTTCAGCTTCTGCTCACCCTGATCGCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTGTCCCCATTGGATGCTTTCAGCTTCTGCTCACCCTGATCGCTGC  195

seq1  CCTCAGCTGCGGCCGCTTGGGAGGCCTCCTCCAGCTGAGTTTCTTGTTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAGCTGCGGCCGCTTGGGAGGCCTCCTCCAGCTGAGTTTCTTGTTGG  245

seq1  CCTGAG-TTTGTGGCTCCCTCTCCTTCTTCCTTCTGTTGCTGGTGCTGAG  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAGTTTTGTGGCTCCCTCTCCTTCTTCCTTCTGTTGCTGGTGCTGAG  295

seq1  AATTCTCAGCTTCAGCCGCTAAACTCTTCTCTGTTGTCATGATGTTCCTA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCTCAGCTTCAGCCGCTAAACTCTTCTCTGTTGTCATGATGTTCCTA  345

seq1  TTAAAAGGAAGAAGAAAAGGGAACTATTATAAGCAAAACAATGCTCCAGG  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAGGAAGAAGAAAAGGGAACTATTATAAGCAAAACAATGCTCCAGG  395

seq1  CAAACCCCTAAACCTCAAAAAGCTAATATATTTGGATTTAATCACCAACA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACCCCTAAACCTCAAAAAGCTAATATATTTGGATTTAATCACCAACA  445

seq1  GAATTCCAATCCATTAAACAGAAGATCTTACATTAAAGCACAAAAAATTT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATCCATTAAACAGAAGATCTTACATTAAAGCACAAAAAATTT  495

seq1  ACCTACCCATCCTGAATAAATTATTAGTGCCTTAAGTCATGAAAGATATG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTACCCATCCTGAATAAATTATTAGTGCCTTAAGTCATGAAAGATATG  545

seq1  CATATTGAGAGACTAGCTTAAAACAATATCTAGGGCTGGAAAGATGGCTC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTGAGAGACTAGCTTAAAACAATATCTAGGGCTGGAAAGATGGCTC  595

seq1  AGCTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGTTCTTCCAGAGGTCCTGAGTTCAATTCCCAGCAACCACATGGTGG  645

seq1  CTCACAACCATCTGCAATGGAGTATGATGCCCTCTTCTGGTGTGTCTGAA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCACAACCATCTGCAATGGAGTATGATGCCCTCTTCTGGTGTGTCTGAA  695

seq1  GATAGCTACAGTGTACTCATATAAATAAAATAAATCTTTAAAAAAAAATC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTACAGTGTACTCATATAAATAAAATAAATCTTTAAAAAAAAATC  745

seq1  TACCAAGGCCATGTAATGAAATACACCATAATTAAAGGCTCAGAACTGTA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCAAGGCCATGTAATGAAATACACCATAATTAAAGGCTCAGAACTGTA  795

seq1  CATAGCAAATACACCTTCATGCTTCCTACACAGGGTATCTGGGTACTGTC  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAGCAAATACACCTTCATGCTTCCTACACAGGGTATCTGGGTACTGTC  845

seq1  CTTTTAAGATGTCAGTCAAAGCTGCAAGATTTGCAGGAATTC  891
      ||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTAAGATGTCAGTCAAAGCTGCAAGATTTGCAGGAATTC  887