BAC Information

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BAC

Clone NameB6Ng01-220G02
Chromosome4 (Build37)
Map Location 66,823,055 - 66,857,063
singlet/doubletdoublet
Overlap genenone
Upstream geneAstn2, LOC667499, Tlr4
Downstream geneLOC100039379, Hmgb1-rs18, LOC433715
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220G02.bB6Ng01-220G02.g
ACCGA035952GA035953
length1,1911,194
definitionB6Ng01-220G02.b B6Ng01-220G02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(66,823,055 - 66,824,254)(66,855,875 - 66,857,063)
sequence
gaattcctgccttctccaatacttttcatatgaaaggattttgtacttcc
taatagtgtcattccatatagccaagcatttagacaatatgaatttatgg
gggctgtacctattcaaacaactgcaagaaatattcaagcactttatcct
gatagctctggtcctcagtcacttgttccccgattgttactccagccaca
tcccacatacatatctccatttactcccaatctttaccttcactgacctt
tctcagtatttgaagcacaaaaatatctgaatataggagttggttatgaa
ggtaccttgcaggaataagcagtactagctttccgacatcagaatttcca
gttaaagagagaaagtccatgaccacatgataagaatggctacaaagtct
cttcatcccagaaatctaatacacttttacaaaatcacagatgaccactt
tgtagcatttcctttctaagcatttgttgagtatttgattgccatttaca
tttttgataggtacataccttataaatctcatctgccttgtgcacaacat
ttctgcagtaccataaaacccatctggttcctagcaggcatcaatatatt
tttattgaatggataaagaataaatacaagagtggatagatgaagactca
tccttgcttcccaggtcctctagtcttcatgctgtgtctatgggctgtag
ggaagagaaaagcaatcaacagagtctgcttgctcctgagaaaaagcaca
ctttgaaaaatgaagtgttccttgccattagctttcagtcaagcatcaca
tcaggaaacttttgcatcagatgctgtgattggaccttgaggggggacac
ccacgatgcgggtcccagcctcctgtgagctggaacagatggttttctca
cacacatctaaataaagctgtaatggtgttggcccgccaacacagcacag
tgaaccctttctgaacaaaaaaagaaaagtgtttctggcatgtcatgtga
aaataaattctacagtgctgcagtttcattttagacaccaattaccttat
ttttttatttatttttttgtatcctctcaaggactgctatctctagtcta
ctagtagagtttcaaaatctcaatagagatcctaccactatcaaggtttc
gattataccaatccacctccttataacacggagccccctct

gaattcattcattcattcacctatgttcttaaatgttattcaatttgatt
tccatcttctgattcttttccccaaggaccttgaggaacacatagcagag
accagttaatatagtattttactgaatcatactggttcatagatggggtt
attgggtcatgtggattctttagtctctgggagctccttgagatcagtac
atattcttctgtctatacagctgtcaaaatacctttagccttggatcttt
tatcttggggtaaaagaatgaattctttgaggagtccatttctacctact
ataaaattgaaacatccaaaggaaaggtagattgtctaacatgttctatc
atatagagaaaatagtactgccttaaagacaccacctcttcatttctata
cagctttagttatttaatattttgggatgagtgagatactcaatattcat
taaaattcctcttcttgaatgttaagctatcttaacttttactttaatca
aatcataatatttaatactgcttatcaaggtttgtgattaagaccttaaa
aatgtacatataacatgtattcacagaataaactgaattaatgatctcaa
atgcgaaacacaaatattgcctttatagtttgaacactggagtggaaagg
caaatacaagctcaatgttacctccatccttttgactaacccacaatcta
cctagggccaatgacttcctgttttgtttttttttttttcatttttttga
ggtatttcaaagagattatataccataattctctaggttgttcctagatc
ctttatcatcatctcatattgcattgcaataaatatgcaagaattgggta
ttaagcttgggcatatttttctgtgacaaaaattgttatgtgggacaatt
tattcttaatgtttacctccatatgtgaaggtctccacatctaccatgga
ggactaattatatgcaattctgtacatggtagaaggttcaggctggagat
tggaaccaaggtctttcagctttcaagtcaggtggaacattttacttact
aaaggctctgtcctttagttccaagcacatgtagaaaacatcctgtctgc
aggtcacccagcaggtttttcaggattgcctttcattagtcattgaccct
acaatgtcttgcggaaagcaatctagccatgaagctctcaagct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66823055_66824254
seq2: B6Ng01-220G02.b_46_1236

seq1  GAATTCCTGCCTTCTCCAATACTTTTCATATGAAAGGATTTTGTACTTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGCCTTCTCCAATACTTTTCATATGAAAGGATTTTGTACTTCC  50

seq1  TAATAGTGTCATTCCATATAGCCAAGCATTTAGACAATATGAATTTATGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAGTGTCATTCCATATAGCCAAGCATTTAGACAATATGAATTTATGG  100

seq1  GGGCTGTACCTATTCAAACAACTGCAAGAAATATTCAAGCACTTTATCCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTGTACCTATTCAAACAACTGCAAGAAATATTCAAGCACTTTATCCT  150

seq1  GATAGCTCTGGTCCTCAGTCACTTGTTCCCCGATTGTTACTCCAGCCACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAGCTCTGGTCCTCAGTCACTTGTTCCCCGATTGTTACTCCAGCCACA  200

seq1  TCCCACATACATATCTCCATTTACTCCCAATCTTTACCTTCACTGACCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCACATACATATCTCCATTTACTCCCAATCTTTACCTTCACTGACCTT  250

seq1  TCTCAGTATTTGAAGCACAAAAATATCTGAATATAGGAGTTGGTTATGAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGTATTTGAAGCACAAAAATATCTGAATATAGGAGTTGGTTATGAA  300

seq1  GGTACCTTGCAGGAATAAGCAGTACTAGCTTTCCGACATCAGAATTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACCTTGCAGGAATAAGCAGTACTAGCTTTCCGACATCAGAATTTCCA  350

seq1  GTTAAAGAGAGAAAGTCCATGACCACATGATAAGAATGGCTACAAAGTCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAAGAGAGAAAGTCCATGACCACATGATAAGAATGGCTACAAAGTCT  400

seq1  CTTCATCCCAGAAATCTAATACACTTTTACAAAATCACAGATGACCACTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATCCCAGAAATCTAATACACTTTTACAAAATCACAGATGACCACTT  450

seq1  TGTAGCATTTCCTTTCTAAGCATTTGTTGAGTATTTGATTGCCATTTACA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGCATTTCCTTTCTAAGCATTTGTTGAGTATTTGATTGCCATTTACA  500

seq1  TTTTTGATAGGTACATACCTTATAAATCTCATCTGCCTTGTGCACAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGATAGGTACATACCTTATAAATCTCATCTGCCTTGTGCACAACAT  550

seq1  TTCTGCAGTACCATAAAACCCATCTGGTTCCTAGCAGGCATCAATATATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGCAGTACCATAAAACCCATCTGGTTCCTAGCAGGCATCAATATATT  600

seq1  TTTATTGAATGGATAAAGAATAAATACAAGAGTGGATAGATGAAGACTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATTGAATGGATAAAGAATAAATACAAGAGTGGATAGATGAAGACTCA  650

seq1  TCCTTGCTTCCCAGGTCCTCTAGTCTTCATGCTGTGTCTATGGGCTGTAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGCTTCCCAGGTCCTCTAGTCTTCATGCTGTGTCTATGGGCTGTAG  700

seq1  GGAAGAGAAAAGCAATCAACAGAGTCTGCTTGCTCCTGAGAAAAAGCACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAAAAGCAATCAACAGAGTCTGCTTGCTCCTGAGAAAAAGCACA  750

seq1  CTTTGAAAAATGAAGTGTTCCTTGCCATTAGCTTTCAGTCAAGCATCACA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGAAAAATGAAGTGTTCCTTGCCATTAGCTTTCAGTCAAGCATCACA  800

seq1  TCAGGAAACTTTTGCATCAGATGCTGTGATTGGACCTTGAGGGGGGACAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGAAACTTTTGCATCAGATGCTGTGATTGGACCTTGAGGGGGGACAC  850

seq1  CCACGATGCGGGTCCCAGCCTCCTGTGAGCTGGAACAGATGGTTTTCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACGATGCGGGTCCCAGCCTCCTGTGAGCTGGAACAGATGGTTTTCTCA  900

seq1  CACACATCTAAATAAAGCTGTAATGGTGTTGGCCCGCCAACACAGCACAG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  CACACATCTAAATAAAGCTGTAATGGTGTTGGCCCGCCAACACAGCACA-  949

seq1  GTGAA-CCTTTCTGAACAAAAAA--GAAAGTGTTTCTGGCATGTCATGTG  997
      ||||| |||||||||||||||||   ||||||||||||||||||||||||
seq2  GTGAACCCTTTCTGAACAAAAAAAGAAAAGTGTTTCTGGCATGTCATGTG  999

seq1  AAAATAAATTTCTACAGTGCTGCAGGTTTTCATTTTAGACACCAATTACC  1047
      |||||||| ||||||||||||||||  |||||||||||||||||||||||
seq2  AAAATAAA-TTCTACAGTGCTGCAG--TTTCATTTTAGACACCAATTACC  1046

seq1  TTATTTTTTTATTTTTTATTTTTTTGTTATCTCTTCAAGGGACTGCTATT  1097
      |||||||||||   |||||||||||| ||||   |||| ||||||||| |
seq2  TTATTTTTTTA---TTTATTTTTTTG-TATCCTCTCAA-GGACTGCTA-T  1090

seq1  CTTCCTAGTCTACTAGTAGAGGTTTCCAAAAATTCCTCCATAGAGATCCT  1147
      ||  |||||||||||||||| |||||  |||||  ||| |||||||||||
seq2  CT--CTAGTCTACTAGTAGA-GTTTC--AAAAT--CTCAATAGAGATCCT  1133

seq1  ACACACTATCAGGGTTTTCCTATTATACC-ATC--ACTCC-TATAACACG  1193
      || |||||||| |||||  | |||||||| |||   |||| |||||||||
seq2  AC-CACTATCAAGGTTT--CGATTATACCAATCCACCTCCTTATAACACG  1180

seq1  ----ACCCTCT  1200
           ||||||
seq2  GAGCCCCCTCT  1191


seq1: chr4_66855875_66857063
seq2: B6Ng01-220G02.g_65_1258 (reverse)

seq1  ATCTTGATAGCTTCAGCCTCCTTGGTTAGATTGCTTTTCTGGCAAGGATT  50
      | ||||| |||||||       ||| ||||||||||| |  |||| ||  
seq2  AGCTTGAGAGCTTCA-------TGGCTAGATTGCTTTCC--GCAA-GACA  40

seq1  TTGTATGTGTTAAATGACTAATGAAA-GCAAT-CTGGAAAAACTGCTTGG  98
      |||||   | | |||||||||||||| ||||| ||| |||| |||| |||
seq2  TTGTA--GGGTCAATGACTAATGAAAGGCAATCCTGAAAAACCTGC-TGG  87

seq1  GTGA-CTGCAGACA-GATG-TTTCTACATGTGGCTTTGAAACTAA--GGC  143
      |||| ||||||||| |||| ||||||||||||   ||| ||||||  | |
seq2  GTGACCTGCAGACAGGATGTTTTCTACATGTG--CTTGGAACTAAAGGAC  135

seq1  AGAGCCTTAGGTAAGT-AAATG-TCCA-CTGAACTGGAAGCTGAAGGACT  190
      ||||||||  |||||| ||||| |||| ||||  || |||||||| ||| 
seq2  AGAGCCTTTAGTAAGTAAAATGTTCCACCTGACTTGAAAGCTGAAAGACC  185

seq1  TTGGTT-CAATCT-CAGCCTGA--CCTCTACCATGTACAGAATTTGCATA  236
      |||||| |||||| ||||||||  | |||||||||||||||| |||||||
seq2  TTGGTTCCAATCTCCAGCCTGAACCTTCTACCATGTACAGAA-TTGCATA  234

seq1  TAATTAGTTCT-CATGGTAGATGTGGAGACCTTCACATATGGAGGTAAAC  285
      |||||||| || ||||||||||||||||||||||||||||||||||||||
seq2  TAATTAGTCCTCCATGGTAGATGTGGAGACCTTCACATATGGAGGTAAAC  284

seq1  ATTAAG-ATAAATTGT-CCACATAACAATTTTTGTCACAG-AAAATATG-  331
      |||||| ||||||||| ||||||||||||||||||||||| |||||||| 
seq2  ATTAAGAATAAATTGTCCCACATAACAATTTTTGTCACAGAAAAATATGC  334

seq1  CCAAGCTTAATA-CCAATTCTTGCATATTTATTGCAATGCAATATGAGAT  380
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CCAAGCTTAATACCCAATTCTTGCATATTTATTGCAATGCAATATGAGAT  384

seq1  GATGATAAAGGATCTAGGAACAACCTAGAGAATTATGGTATATAATCTCT  430
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGATAAAGGATCTAGGAACAACCTAGAGAATTATGGTATATAATCTCT  434

seq1  TTGAAATACCTCAAAAAAATG-AAAAAAAAAAAACAAAACAGGAAGTCAT  479
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TTGAAATACCTCAAAAAAATGAAAAAAAAAAAAACAAAACAGGAAGTCAT  484

seq1  TGGCCCTAGGTAGATTGTGGGTTAGTCAAAAGGATGGAGGTAACATTGAG  529
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGCCCTAGGTAGATTGTGGGTTAGTCAAAAGGATGGAGGTAACATTGAG  534

seq1  CTTGTATTTGCCTTTCCACTCCAGTGTTCAAACTATAAAGGCAATATTTG  579
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTATTTGCCTTTCCACTCCAGTGTTCAAACTATAAAGGCAATATTTG  584

seq1  TGTTTCGCATTTGAGATCATTAATTCAGTTTATTCTGTGAATACATGTTA  629
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTCGCATTTGAGATCATTAATTCAGTTTATTCTGTGAATACATGTTA  634

seq1  TATGTACATTTTTAAGGTCTTAATCACAAACCTTGATAAGCAGTATTAAA  679
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTACATTTTTAAGGTCTTAATCACAAACCTTGATAAGCAGTATTAAA  684

seq1  TATTATGATTTGATTAAAGTAAAAGTTAAGATAGCTTAACATTCAAGAAG  729
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATGATTTGATTAAAGTAAAAGTTAAGATAGCTTAACATTCAAGAAG  734

seq1  AGGAATTTTAATGAATATTGAGTATCTCACTCATCCCAAAATATTAAATA  779
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTTAATGAATATTGAGTATCTCACTCATCCCAAAATATTAAATA  784

seq1  ACTAAAGCTGTATAGAAATGAAGAGGTGGTGTCTTTAAGGCAGTACTATT  829
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAAAGCTGTATAGAAATGAAGAGGTGGTGTCTTTAAGGCAGTACTATT  834

seq1  TTCTCTATATGATAGAACATGTTAGACAATCTACCTTTCCTTTGGATGTT  879
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTATATGATAGAACATGTTAGACAATCTACCTTTCCTTTGGATGTT  884

seq1  TCAATTTTATAGTAGGTAGAAATGGACTCCTCAAAGAATTCATTCTTTTA  929
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATTTTATAGTAGGTAGAAATGGACTCCTCAAAGAATTCATTCTTTTA  934

seq1  CCCCAAGATAAAAGATCCAAGGCTAAAGGTATTTTGACAGCTGTATAGAC  979
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCAAGATAAAAGATCCAAGGCTAAAGGTATTTTGACAGCTGTATAGAC  984

seq1  AGAAGAATATGTACTGATCTCAAGGAGCTCCCAGAGACTAAAGAATCCAC  1029
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAATATGTACTGATCTCAAGGAGCTCCCAGAGACTAAAGAATCCAC  1034

seq1  ATGACCCAATAACCCCATCTATGAACCAGTATGATTCAGTAAAATACTAT  1079
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCCAATAACCCCATCTATGAACCAGTATGATTCAGTAAAATACTAT  1084

seq1  ATTAACTGGTCTCTGCTATGTGTTCCTCAAGGTCCTTGGGGAAAAGAATC  1129
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTGGTCTCTGCTATGTGTTCCTCAAGGTCCTTGGGGAAAAGAATC  1134

seq1  AGAAGATGGAAATCAAATTGAATAACATTTAAGAACATAGGTGAATGAAT  1179
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGATGGAAATCAAATTGAATAACATTTAAGAACATAGGTGAATGAAT  1184

seq1  GAATGAATTC  1189
      ||||||||||
seq2  GAATGAATTC  1194


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