BAC Information

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BAC

Clone NameB6Ng01-220L03
Chromosome4 (Build37)
Map Location 27,186,487 - 27,304,582
singlet/doubletdoublet
Overlap genenone
Upstream geneManea, Bhmt-ps1, LOC665079, Gng2-ps1
Downstream geneLOC100040691, Tpm3-rs2, LOC100040842, LOC100040735, LOC230044
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-220L03.bB6Ng01-220L03.g
ACCGA036189GA036190
length1,1241,173
definitionB6Ng01-220L03.b B6Ng01-220L03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(27,303,441 - 27,304,582)(27,186,487 - 27,187,664)
sequence
gaattctttgaaattttcaacttattttcagtacttgtaacactattgaa
taaagaaaggtgcttttttattttgaaatggaagcctttatgctttttat
ctgatcttaatagcaaattatgtgtttttccatgagtattttttattaca
gtctactagtttaacttctacaatcaggaaaaaaaatatagtaaatgtgc
aatgggtaaaggcaactccttacctatgcattcaggagggctgggcttgg
gtggaaattgattcaatgaaaatggatttgggatatgaaatttactaaca
tgtattaattatttgtaatagctagcttagttttaaattttaaaacttta
aaaattgaatgaaattgttttaaatctagaaattggacatttctagcata
ttgattcttttaattttgaataaactataatttttataactttcagcaaa
tatttgtagcctagatgattgtaagtggaaggaaaaatggggtagatatg
gttatattccattatatagttgtatgaaatttccaataataaaggaaaac
attttaaaagataattgtttcaaaagtttcctttcttcaggctgacaatt
aggaagactagtactatgatggcttctacattgtctaccctaatacctag
aaaacagtactttatttagttggtttacttaattgaattctgttttgcca
actgaatagacaaaaataatataaatctttggtgatttatttatttctag
acatataaaaaaacagatgataagtcttgattacattatactttgagaag
tgtgggccctgcctgacattatactttctcctctttaattttgggcctta
acttggaagtaccatgggatcaattcttcattaatactgcttaatattca
agtgaaagcccctatgaattactctcataacattattagatgttttcatg
tctgtgcacatagatttattctcatggggaattgcacagtaaccacatgt
atcataatttacaatatatatttccatgatactgtagtgtataaactgta
tatatgtaatgtattttgtgtttctatagatttgacttcttctgctccat
cttctcttatttgaggtaatatag

gaattccacttaatgtgtccatttgtagtaacatttgttttggaaaacat
tctattttgcattaaattgttccattaaaaagtaaatattatgcaggtga
aaagcaatgatattaaataaggcaatattaaagagacacagaagacaaaa
gacaagtcattattgctgtgctgcatcctttgcatggaggaggtggctga
gagcttcattgaagagcctaggactcttctccaagaatctttccttaaac
attgttacactgttttaaaatcctgatttttttttctaacctaagagaga
ttagatgtttatagtatgtcgtttattcagacatcctgcccaaatagcaa
ctatctgtggttgattgaagattcccattttaatttaatctatgaatttt
tgtgtgacacacaaaatcataaactacatggcatattttaattatgcatg
ttttaaataaatggtcacttttaacgaagtatcttacataaatatgtaat
tcctgtgatttggacactcagagtctctaatctatcataatttgaaaact
gttgaaatattcatccaatatccttcttctagtcaatatagaaatgttat
taaaatatacaaagtaaatatatttaacttctcaaagaactatcttagat
tatttttttagattaacactgtaattttctatatatgagttggggcaatt
atatttcttgtatttgtctattttgtttaatttgatctcaaattaaacac
aaaatgagcaccaggaaggatcacattcctgtcaaaaactcttatcagac
aattaaaattatagaaaattttctctttgaatatactaaatttcaataga
gataagtaacaggaatccatttgggaaatcctcaaatatctaagaatcaa
acagaaaattaaacaggcttcttctaatgactcagttgaaatataaagta
aaaaaaattgatttgtttcatctttaaaatgatcttagaaaaggtcttaa
atgactaccacacctatgtcactaacatatcatatacatgtgctgttcaa
ttatcattgtcataaacacgtcttgtctagactactcatttgtggttggt
cactgtgttgagagaagcctatcatatgtgggaaatgcaatctacctctg
caagtctatgtgggtaaacactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_27303441_27304582
seq2: B6Ng01-220L03.b_46_1169 (reverse)

seq1  CTATATTACCTCAAAATAGAGGAAGATTGTAGCAGAAG-AGTCAAAATCT  49
      |||||||||||||||  ||| ||||| || |||||||| |||| ||||| 
seq2  CTATATTACCTCAAATAAGA-GAAGA-TGGAGCAGAAGAAGTC-AAATC-  46

seq1  TATAGAAAACAACAAAAATACATAACAATAATAATACAAGTTTATACACT  99
      ||||| |||||   ||||||||| || |||   |||| ||||||||||| 
seq2  TATAG-AAACA--CAAAATACATTAC-ATA--TATAC-AGTTTATACAC-  88

seq1  TACAGTTATCATGGAAATTAATTATAATTGTAAATTTATGATACATGTGG  149
      ||||| ||||||||||||  ||    |||||||| |||||||||||||||
seq2  TACAG-TATCATGGAAATATAT----ATTGTAAA-TTATGATACATGTGG  132

seq1  TTTACTGTGCAATTCCCCATGAGAATAAATCTATGTGCACAGACATGAAA  199
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -TTACTGTGCAATTCCCCATGAGAATAAATCTATGTGCACAGACATGAAA  181

seq1  ACATCTAATAATGTTATGAGAGTAATTCATAGGGGCTTTCACTTGAATAT  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATCTAATAATGTTATGAGAGTAATTCATAGGGGCTTTCACTTGAATAT  231

seq1  TAAGCAGTATTAATGAAGAATTTGAT-CCATGGTACTTCCAAGTTAAGGC  298
      |||||||||||||||||||| ||||| |||||||||||||||||||||||
seq2  TAAGCAGTATTAATGAAGAA-TTGATCCCATGGTACTTCCAAGTTAAGGC  280

seq1  CCAAAATTAAAGAGGAGAAAGTATAATGTCAGGCAGGGCCCACACTTCTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAAATTAAAGAGGAGAAAGTATAATGTCAGGCAGGGCCCACACTTCTC  330

seq1  AAAGTATAATGTAATCAAGACTTATCATCTGTTTTTTTATATGTCTAGAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATAATGTAATCAAGACTTATCATCTGTTTTTTTATATGTCTAGAA  380

seq1  ATAAATAAATCACCAAAGATTTATATTATTTTTGTCTATTCAGTTGGCAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATAAATCACCAAAGATTTATATTATTTTTGTCTATTCAGTTGGCAA  430

seq1  AACAGAATTCAATTAAGTAAACCAACTAAATAAAGTACTGTTTTCTAGGT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAATTCAATTAAGTAAACCAACTAAATAAAGTACTGTTTTCTAGGT  480

seq1  ATTAGGGTAGACAATGTAGAAGCCATCATAGTACTAGTCTTCCTAATTGT  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAGGGTAGACAATGTAGAAGCCATCATAGTACTAGTCTTCCTAATTGT  530

seq1  CAGCCTGAAGAAAGGAAACTTTTGAAACAATTATCTTTTAAAATGTTTTC  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGAAGAAAGGAAACTTTTGAAACAATTATCTTTTAAAATGTTTTC  580

seq1  CTTTATTATTGGAAATTTCATACAACTATATAATGGAATATAACCATATC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTATTGGAAATTTCATACAACTATATAATGGAATATAACCATATC  630

seq1  TACCCCATTTTTCCTTCCACTTACAATCATCTAGGCTACAAATATTTGCT  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCATTTTTCCTTCCACTTACAATCATCTAGGCTACAAATATTTGCT  680

seq1  GAAAGTTATAAAAATTATAGTTTATTCAAAATTAAAAGAATCAATATGCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTATAAAAATTATAGTTTATTCAAAATTAAAAGAATCAATATGCT  730

seq1  AGAAATGTCCAATTTCTAGATTTAAAACAATTTCATTCAATTTTTAAAGT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAATGTCCAATTTCTAGATTTAAAACAATTTCATTCAATTTTTAAAGT  780

seq1  TTTAAAATTTAAAACTAAGCTAGCTATTACAAATAATTAATACATGTTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAATTTAAAACTAAGCTAGCTATTACAAATAATTAATACATGTTAG  830

seq1  TAAATTTCATATCCCAAATCCATTTTCATTGAATCAATTTCCACCCAAGC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATTTCATATCCCAAATCCATTTTCATTGAATCAATTTCCACCCAAGC  880

seq1  CCAGCCCTCCTGAATGCATAGGTAAGGAGTTGCCTTTACCCATTGCACAT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCCCTCCTGAATGCATAGGTAAGGAGTTGCCTTTACCCATTGCACAT  930

seq1  TTACTATATTTTTTTTCCTGATTGTAGAAGTTAAACTAGTAGACTGTAAT  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTATATTTTTTTTCCTGATTGTAGAAGTTAAACTAGTAGACTGTAAT  980

seq1  AAAAAATACTCATGGAAAAACACATAATTTGCTATTAAGATCAGATAAAA  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAATACTCATGGAAAAACACATAATTTGCTATTAAGATCAGATAAAA  1030

seq1  AGCATAAAGGCTTCCATTTCAAAATAAAAAAGCACCTTTCTTTATTCAAT  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATAAAGGCTTCCATTTCAAAATAAAAAAGCACCTTTCTTTATTCAAT  1080

seq1  AGTGTTACAAGTACTGAAAATAAGTTGAAAATTTCAAAGAATTC  1142
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTTACAAGTACTGAAAATAAGTTGAAAATTTCAAAGAATTC  1124


seq1: chr4_27186487_27187664
seq2: B6Ng01-220L03.g_66_1238

seq1  GAATTCCACTTAATGTGTCCATTTGTAGTAACATTTGTTTTGGAAAACAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACTTAATGTGTCCATTTGTAGTAACATTTGTTTTGGAAAACAT  50

seq1  TCTATTTTGCATTAAATTGTTCCATTAAAAAGTAAATATTATGCAGGTGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTTTGCATTAAATTGTTCCATTAAAAAGTAAATATTATGCAGGTGA  100

seq1  AAAGCAATGATATTAAATAAGGCAATATTAAAGAGACACAGAAGACAAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAATGATATTAAATAAGGCAATATTAAAGAGACACAGAAGACAAAA  150

seq1  GACAAGTCATTATTGCTGTGCTGCATCCTTTGCATGGAGGAGGTGGCTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAAGTCATTATTGCTGTGCTGCATCCTTTGCATGGAGGAGGTGGCTGA  200

seq1  GAGCTTCATTGAAGAGCCTAGGACTCTTCTCCAAGAATCTTTCCTTAAAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTTCATTGAAGAGCCTAGGACTCTTCTCCAAGAATCTTTCCTTAAAC  250

seq1  ATTGTTACACTGTTTTAAAATCCTGATTTTTTTTTCTAACCTAAGAGAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTTACACTGTTTTAAAATCCTGATTTTTTTTTCTAACCTAAGAGAGA  300

seq1  TTAGATGTTTATAGTATGTCGTTTATTCAGACATCCTGCCCAAATAGCAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGATGTTTATAGTATGTCGTTTATTCAGACATCCTGCCCAAATAGCAA  350

seq1  CTATCTGTGGTTGATTGAAGATTCCCATTTTAATTTAATCTATGAATTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATCTGTGGTTGATTGAAGATTCCCATTTTAATTTAATCTATGAATTTT  400

seq1  TGTGTGACACACAAAATCATAAACTACATGGCATATTTTAATTATGCATG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGACACACAAAATCATAAACTACATGGCATATTTTAATTATGCATG  450

seq1  TTTTAAATAAATGGTCACTTTTAACGAAGTATCTTACATAAATATGTAAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAAATGGTCACTTTTAACGAAGTATCTTACATAAATATGTAAT  500

seq1  TCCTGTGATTTGGACACTCAGAGTCTCTAATCTATCATAATTTGAAAACT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTGTGATTTGGACACTCAGAGTCTCTAATCTATCATAATTTGAAAACT  550

seq1  GTTGAAATATTCATCCAATATCCTTCTTCTAGTCAATATAGAAATGTTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGAAATATTCATCCAATATCCTTCTTCTAGTCAATATAGAAATGTTAT  600

seq1  TAAAATATACAAAGTAAATATATTTAACTTCTCAAAGAACTATCTTAGAT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAATATACAAAGTAAATATATTTAACTTCTCAAAGAACTATCTTAGAT  650

seq1  TATTTTTTTAGATTAACACTGTAATTTTCTATATATGAGTTGGGGCAATT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTTAGATTAACACTGTAATTTTCTATATATGAGTTGGGGCAATT  700

seq1  ATATTTCTTGTATTTGTCTATTTTGTTTAATTTGATCTCAAATTAAACAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTTGTATTTGTCTATTTTGTTTAATTTGATCTCAAATTAAACAC  750

seq1  AAAATGAGCACCAGGAAGGATCACATTCCTGTCAAAAACTCTTATCAGAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGCACCAGGAAGGATCACATTCCTGTCAAAAACTCTTATCAGAC  800

seq1  AATTAAAATTATAGAAAATTTTCTCTTTGAATATACTAAATTTCAATAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAAATTATAGAAAATTTTCTCTTTGAATATACTAAATTTCAATAGA  850

seq1  GATAAGTAACAGGAATCCATTTGGGAAATCCTCAAATATCTAAGAATCAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATAAGTAACAGGAATCCATTTGGGAAATCCTCAAATATCTAAGAATCAA  900

seq1  ACAGAAAATTAAACAGGCTTCTTCTAAATGACTCAGTTGAAATATAAAGT  950
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  ACAGAAAATTAAACAGGCTTCTTCT-AATGACTCAGTTGAAATATAAAGT  949

seq1  AAAAAAAATTGATTTTGTTTCATCTTTAAAAATGATCTTAGAAAAGGTCT  1000
      |||||||||||| |||||||||||||| ||||||||||||||||||||||
seq2  AAAAAAAATTGA-TTTGTTTCATCTTT-AAAATGATCTTAGAAAAGGTCT  997

seq1  TAAATGACTACCACACCTATGTCACTAAACATATTCATATACAATGTGCT  1050
      |||||||||||||||||||||||||| |||||| |||||||| |||||||
seq2  TAAATGACTACCACACCTATGTCACT-AACATA-TCATATAC-ATGTGCT  1044

seq1  GGTTCCATTTATCATTGTTCATAAACACGTC-TGTCTAGGACTACTCATT  1099
      |  | || ||||||||| ||||||||||||| |||||| |||||||||||
seq2  G--TTCAATTATCATTG-TCATAAACACGTCTTGTCTA-GACTACTCATT  1090

seq1  TGTGGTTGGTCAACCTGTG-TGAGAG-AGCTTATCAT-TGTGGGAAATGC  1146
      ||||||||||||  ||||| |||||| ||| |||||| ||||||||||||
seq2  TGTGGTTGGTCA--CTGTGTTGAGAGAAGCCTATCATATGTGGGAAATGC  1138

seq1  ATTCTACCTCTGCCAGTCTATGTG---TAACACTT  1178
      | ||||||||||| ||||||||||    |||||||
seq2  AATCTACCTCTGCAAGTCTATGTGGGTAAACACTT  1173


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