BAC Information

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BAC

Clone NameB6Ng01-221O04
Chromosome4 (Build37)
Map Location 66,142,411 - 66,143,500
singlet/doubletsinglet
Overlap genenone
Upstream geneAstn2, Trim32
Downstream geneLOC667499, Tlr4, LOC100039379
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-221O04.bB6Ng01-221O04.g
ACCGA037054GA037055
length5001,085
definitionB6Ng01-221O04.b B6Ng01-221O04.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattcaaatgatatgtactcactgataagtggaaattagaccagaaact
tagtatacctgagatacaagagtcaatttgtaaaacacatgaaactgaag
aagaacaaagaccaaagtgtggacactttgccccttcttagaattggaaa
caatcacccatgaaaggagttacagagacaaaatttggagctgagacaaa
aggatggaccatctagagactgccatatccagggatccatcccataatta
gcctccaaacgatgacaccattgcatatactagcaagcatttgctgaaag
gaccctgatatagctgtctcttgtgagactaggccggggcctagcaaaca
cagaagtggatgctcacagtcagctattggatggatcacaggacccccaa
tggaggagctagagaaagtatccaaggagctaaagagatctgcaaccctt
aggtgcaacaacattatgaactaaccagtacctggagctcttgactctag


gaattcatgagctctagcaacccccagaggcaggacaatacaaaggagtc
ttccccagggccatccctgtcaatagtagcttctgaacccaaatgaatat
atttttgagcctctgaaagaggtctgggccatctttgtgagcacaggaga
ctttatatggggctatcacattgttgctctgttttgcttctaagttatta
gactcctggtgtcatatgattaaggtgactgggtttagaatcagctcgga
gactgaggcacaccaagaagggaagagtaactgagaatgaaagacccacc
ttgaatgtagaaggcaacatcttttgggtcaggcctctagacaaaataaa
gaagaaggagagaggtggtatagttcatgcattgtgcttctgtgcatctt
gaccctcaatgatgtgggtcctcctccaccacaccagactgaatcctctt
aaaccctgagacaaaataaataattcctcctgtaggttgccattgttgta
tatttgaaaacagttacaataaaaacctaatcaatatgtcatgattcttc
atgaaattaaaagactcagatgtggtacttgcatttaatctcagcaccca
gtatgctgagacagaatgatcaacagtatagtgacagcttgggctataca
ttaaatttggggctaatttatgttatgtgaaactctgcctccaaaaatat
tttaatgaaataaaagaaatatcatgaagtccttcagttgaattataaag
tgaaattccaaagggaaccagcaaatcaagttccatgttgtcatggggat
tttctaaagcaagagataaacactgcttaaccaggtgggctttcaggaat
cagttactgcatagccatagtgttgatatctgtaaaatgggagtaattat
atcctggaaatgaacaaagtcatgaatgttagtgtccgtagaaagggaaa
ggtaaatatgtgtgatgtgatagattcttaaagatgggcttcttaaaagt
ggcatgccttggaatgatgcttgcagtagaagagaatctattgctatggg
gaaagaatggaagggctccagattgcctcagtagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_66142411_66143500
seq2: B6Ng01-221O04.g_67_1151

seq1  GAATTCATGAGCTCTAGCAACCCCCAGAGGCAGGACAATACAAAGGAGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCATGAGCTCTAGCAACCCCCAGAGGCAGGACAATACAAAGGAGTC  50

seq1  TTCCCCAGGGCCATCCCTGTCAATAGTAGCTTCTGAACCCAAATGAATAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCCCAGGGCCATCCCTGTCAATAGTAGCTTCTGAACCCAAATGAATAT  100

seq1  ATTTTTGAGCCTCTGAAAGAGGTCTGGGCCATCTTTGTGAGCACAGGAGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTGAGCCTCTGAAAGAGGTCTGGGCCATCTTTGTGAGCACAGGAGA  150

seq1  CTTTATATGGGGCTATCACATTGTTGCTCTGTTTTGCTTCTAAGTTATTA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATATGGGGCTATCACATTGTTGCTCTGTTTTGCTTCTAAGTTATTA  200

seq1  GACTCCTGGTGTCATATGATTAAGGTGACTGGGTTTAGAATCAGCTCGGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTCCTGGTGTCATATGATTAAGGTGACTGGGTTTAGAATCAGCTCGGA  250

seq1  GACTGAGGCACACCAAGAAGGGAAGAGTAACTGAGAATGAAAGACCCACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTGAGGCACACCAAGAAGGGAAGAGTAACTGAGAATGAAAGACCCACC  300

seq1  TTGAATGTAGAAGGCAACATCTTTTGGGTCAGGCCTCTAGACAAAATAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATGTAGAAGGCAACATCTTTTGGGTCAGGCCTCTAGACAAAATAAA  350

seq1  GAAGAAGGAGAGAGGTGGTATAGTTCATGCATTGTGCTTCTGTGCATCTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAAGGAGAGAGGTGGTATAGTTCATGCATTGTGCTTCTGTGCATCTT  400

seq1  GACCCTCAATGATGTGGGTCCTCCTCCACCACACCAGACTGAATCCTCTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCCTCAATGATGTGGGTCCTCCTCCACCACACCAGACTGAATCCTCTT  450

seq1  AAACCCTGAGACAAAATAAATAATTCCTCCTGTAGGTTGCCATTGTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACCCTGAGACAAAATAAATAATTCCTCCTGTAGGTTGCCATTGTTGTA  500

seq1  TATTTGAAAACAGTTACAATAAAAACCTAATCAATATGTCATGATTCTTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAAAACAGTTACAATAAAAACCTAATCAATATGTCATGATTCTTC  550

seq1  ATGAAATTAAAAGACTCAGATGTGGTACTTGCATTTAATCTCAGCACCCA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATTAAAAGACTCAGATGTGGTACTTGCATTTAATCTCAGCACCCA  600

seq1  GTATGCTGAGACAGAATGATCAACAGTATAGTGACAGCTTGGGCTATACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATGCTGAGACAGAATGATCAACAGTATAGTGACAGCTTGGGCTATACA  650

seq1  TTAAATTTGGGGCTAATTTATGTTATGTGAAACTCTGCCTCCAAAAATAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAATTTGGGGCTAATTTATGTTATGTGAAACTCTGCCTCCAAAAATAT  700

seq1  TTTAATGAAATAAAAGAAATATCATGAAGTCCTTCAGTTGAATTATAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGAAATAAAAGAAATATCATGAAGTCCTTCAGTTGAATTATAAAG  750

seq1  TGAAATTCCAAAGGGAACCAGCAAATCAAGTTCCATGTTGTCATGGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAATTCCAAAGGGAACCAGCAAATCAAGTTCCATGTTGTCATGGGGAT  800

seq1  TTTCTAAAGCAAGAGATAAACACTGCTTAACCAGGTGGGCTTTCAGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTAAAGCAAGAGATAAACACTGCTTAACCAGGTGGGCTTTCAGGAAT  850

seq1  CAGTTACTGCATAGCCATAGTGTTGATATCTGTAAAATGGGAGTAATTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTACTGCATAGCCATAGTGTTGATATCTGTAAAATGGGAGTAATTAT  900

seq1  ATCCTGGAAATGAACAAAGTCATGAATGTTTAGTGTCCGTAGAAAGGGAA  950
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  ATCCTGGAAATGAACAAAGTCATGAATG-TTAGTGTCCGTAGAAAGGGAA  949

seq1  AGTTAAATATGTGTGATGTGATAGATTCTTAAAGAT-GGCTTCTTAAAAG  999
      || ||||||||||||||||||||||||||||||||| |||||||||||||
seq2  AGGTAAATATGTGTGATGTGATAGATTCTTAAAGATGGGCTTCTTAAAAG  999

seq1  TGGGCATGCCTTTGGAATGATGCTTGCAGTAGAAGAGAATCTATTGCTAT  1049
      | |||||||| |||||||||||||||||||||||||||||||||||||||
seq2  T-GGCATGCC-TTGGAATGATGCTTGCAGTAGAAGAGAATCTATTGCTAT  1047

seq1  TGGGGGACAGAAGGGAGGGGGCTCCAGAATGCCTCAGTAGG  1090
        ||||| |||| |||  |||||||||| ||||||||||||
seq2  --GGGGAAAGAATGGA-AGGGCTCCAGATTGCCTCAGTAGG  1085


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