BAC Information

Click to search

BAC

Clone NameB6Ng01-222B02
Chromosome4 (Build37)
Map Location 14,014,258 - 14,099,109
singlet/doubletdoublet
Overlap geneLOC625831, LOC433687
Upstream geneLOC100039988, Runx1t1
Downstream geneLOC100040030, LOC433688, Slc26a7, 1700034K16Rik, Otud6b, LOC100040047, Tmem55a, OTTMUSG00000004551, Efcbp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222B02.bB6Ng01-222B02.g
ACCGA037192GA037193
length1,1391,081
definitionB6Ng01-222B02.b B6Ng01-222B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(14,097,976 - 14,099,109)(14,014,258 - 14,015,342)
sequence
gaattctcaattaatacaaatatattacatgatattattatcaaaaatat
tatttaaaaaatttaaagagtagtttcaaatcattaagatacatactttt
tgaggatttaactaaaatttctttatgctttttcattttgtcaggttata
tacagaaatcatttttgacccttctgtcttgtaggcccataatacatgtg
cgacacattgataaacaggtcatcatactaagttcatatgactgagcttc
ttccttgctgatacacatgtaaggaacttcaatattgtctttgcacagac
acttttataaaatagtttatgtttaatggtagtggtaaaatgcccactgt
ttctcataaaggttattagactgtgaagccaagtttaaatttttcaaaaa
gaaaatatggggaaaaaatgaaataaatgtccaggaaactaaataagcat
aactaatatttgtgagatactagtgctatcattgggggcagggggaagca
tgaattgcaggcactcaacagctccagaataagtctctgtctccagtttt
gtctttcagctgcatttgtacttattaatcagttagctggtataaaaagg
acctaaaagttgaagcttttgtaagtttataaagatgcaaatgtttaaca
ttttatttctaggtctacctcataagcgatcatatctcagcatctgtcca
aaactctaaccctcagaaccacacatgtactctctggacaggacgagaag
gatgggcagcacttggtactatcagtaatactcaaccatacttaaatgaa
agattgttcatttttttctcctgcttgataagtctacctggtggaatagc
atcacgtgattccctatcaaagaccactgagtagcaaagcggagacagct
tgattttctagaagaaactcgatacaaaatttgtgcagctactgtcgatg
ctttctgtttttgttttgtttttggttttggtttttcagctggtaggaac
ttattttccttccacttttccctttgctcaggtgcctgcacagcagcctc
aaggacccactcagtggtagcttccaaacccactcagtgcttttgcttgg
gggagacgctgacagtcttcagatgcctgggctgcgcac

gaattcctggctgctgcctggaaagggtcgccttgtgaaagtgtttaggt
aagcagcttgttactttgataaaggccatgagagagtgatgctgtccact
tatgtgcttataaaggaggttaggggaaggagagcacagtctttggtgcc
tcctccaagtgttaagtgttcccagcctcctttcagaactgctgcatgag
tgaacttactcaggaaaaaccatagcccttgcttcactaaaaccagtcta
aaccggtgtcatccggaggggggctgaaagagttcatagaaattctggca
aagcctgctaatctacagttaacttgtacagcaaggatttaggatgagat
caaacttcattggaaaaagaaaaggagcaacagcatagagatggaacgag
aaagagaaaaattggccccacgccccggtgaacagcttagtacttgaagt
ggggcttgaaccctgatccaggagacttcaatctcccttaaacccactcc
ccaagagggcacagggatgcccggggtgcagggttccagtgaggggttga
gagtgagtccacagttgcctttctgaaggagcatgatctgtgtggagtct
agcattgcagcacaaagctcgaggttcctagggaggctttcctcacctca
gcaagggttcatttgtcacatttttgtttttgactatttactaccacact
gcagaagtgtttgagatcttttccttctcaatctctccctcatttccatt
caacactctacagtttgcctttcccccagtgcatacaatttatcacctct
ccattctaattagcttccaagctgcctatattgtcacccccacttttatg
atccttgtctccatatattttgatctcctaaattggctttgatgcatccc
attttgagaactgtttgccaagaattttctcctttttaatatcttccagg
gttactttacactctatgtattttatttcctccatttgtgttatctacga
ggtccctttcaaatctggttcccactcacaattactcaatcttgctctgc
tgccaatggtagaagtcttcagagaatactt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_14097976_14099109
seq2: B6Ng01-222B02.b_46_1184 (reverse)

seq1  GTGCGCAG-CCAGCCA-CTGAGGACTGGTCAGCGTCTCCCAC-AGCAAAG  47
      |||||||| |||| || |||| |||| ||||||||||||| | |||||| 
seq2  GTGCGCAGCCCAGGCATCTGAAGACT-GTCAGCGTCTCCCCCAAGCAAAA  49

seq1  GCCACTGAGTGGGTT--GGAGCTACCACTGAGT-GGTCC-TGA-GCTGCT  92
      | |||||||||||||  | |||||||||||||| ||||| ||| ||||||
seq2  G-CACTGAGTGGGTTTGGAAGCTACCACTGAGTGGGTCCTTGAGGCTGCT  98

seq1  GTGCAGGCACCTGAGCAAAGGGAAAAAGTGGAAGGAAAATAAAGTTCCTA  142
      |||||||||||||||||||||| ||||||||||||||||| |||||||||
seq2  GTGCAGGCACCTGAGCAAAGGG-AAAAGTGGAAGGAAAAT-AAGTTCCTA  146

seq1  CAAGCTGAAAAAAACAAAAACAAAAACAAAAACAAAAACAGAAAGCATCG  192
      | ||||| ||||| ||||| ||||||| ||||||||||||||||||||||
seq2  CCAGCTG-AAAAACCAAAACCAAAAAC-AAAACAAAAACAGAAAGCATCG  194

seq1  ACAGTAGCTGCAC-AATTTTGTATCGAGTTTCTTCTAGAAAATC-AGCTG  240
      ||||||||||||| |||||||||||||||||||||||||||||| |||||
seq2  ACAGTAGCTGCACAAATTTTGTATCGAGTTTCTTCTAGAAAATCAAGCTG  244

seq1  TCTCCGCTTTGCTACTCAGTGGTCTTTGATAGGGAATCACGTGATGCTAT  290
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCGCTTTGCTACTCAGTGGTCTTTGATAGGGAATCACGTGATGCTAT  294

seq1  TCCACCAGGTAGACTTATCAAGCAGGAGAAAAAAATGAACAATC-TTCAT  339
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  TCCACCAGGTAGACTTATCAAGCAGGAGAAAAAAATGAACAATCTTTCAT  344

seq1  TTAAGTATGGTTGAGTATTACTGATAGTACCAAGTGCTGCCCATCCTTCT  389
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAGTATGGTTGAGTATTACTGATAGTACCAAGTGCTGCCCATCCTTCT  394

seq1  CGTCCTGTCCAGAGAGTACATGTGTGGTTCTGAGGGTTAGAGTTTTGGAC  439
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTCCTGTCCAGAGAGTACATGTGTGGTTCTGAGGGTTAGAGTTTTGGAC  444

seq1  AGATGCTGAGATATGATCGCTTATGAGGTAGACCTAGAAATAAAATGTTA  489
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGCTGAGATATGATCGCTTATGAGGTAGACCTAGAAATAAAATGTTA  494

seq1  AACATTTGCATCTTTATAAACTTACAAAAGCTTCAACTTTTAGGTCCTTT  539
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTTGCATCTTTATAAACTTACAAAAGCTTCAACTTTTAGGTCCTTT  544

seq1  TTATACCAGCTAACTGATTAATAAGTACAAATGCAGCTGAAAGACAAAAC  589
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATACCAGCTAACTGATTAATAAGTACAAATGCAGCTGAAAGACAAAAC  594

seq1  TGGAGACAGAGACTTATTCTGGAGCTGTTGAGTGCCTGCAATTCATGCTT  639
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGACAGAGACTTATTCTGGAGCTGTTGAGTGCCTGCAATTCATGCTT  644

seq1  CCCCCTGCCCCCAATGATAGCACTAGTATCTCACAAATATTAGTTATGCT  689
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTGCCCCCAATGATAGCACTAGTATCTCACAAATATTAGTTATGCT  694

seq1  TATTTAGTTTCCTGGACATTTATTTCATTTTTTCCCCATATTTTCTTTTT  739
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTAGTTTCCTGGACATTTATTTCATTTTTTCCCCATATTTTCTTTTT  744

seq1  GAAAAATTTAAACTTGGCTTCACAGTCTAATAACCTTTATGAGAAACAGT  789
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAAATTTAAACTTGGCTTCACAGTCTAATAACCTTTATGAGAAACAGT  794

seq1  GGGCATTTTACCACTACCATTAAACATAAACTATTTTATAAAAGTGTCTG  839
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTTTACCACTACCATTAAACATAAACTATTTTATAAAAGTGTCTG  844

seq1  TGCAAAGACAATATTGAAGTTCCTTACATGTGTATCAGCAAGGAAGAAGC  889
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAAGACAATATTGAAGTTCCTTACATGTGTATCAGCAAGGAAGAAGC  894

seq1  TCAGTCATATGAACTTAGTATGATGACCTGTTTATCAATGTGTCGCACAT  939
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGTCATATGAACTTAGTATGATGACCTGTTTATCAATGTGTCGCACAT  944

seq1  GTATTATGGGCCTACAAGACAGAAGGGTCAAAAATGATTTCTGTATATAA  989
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTATGGGCCTACAAGACAGAAGGGTCAAAAATGATTTCTGTATATAA  994

seq1  CCTGACAAAATGAAAAAGCATAAAGAAATTTTAGTTAAATCCTCAAAAAG  1039
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACAAAATGAAAAAGCATAAAGAAATTTTAGTTAAATCCTCAAAAAG  1044

seq1  TATGTATCTTAATGATTTGAAACTACTCTTTAAATTTTTTAAATAATATT  1089
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTATCTTAATGATTTGAAACTACTCTTTAAATTTTTTAAATAATATT  1094

seq1  TTTGATAATAATATCATGTAATATATTTGTATTAATTGAGAATTC  1134
      |||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATAATAATATCATGTAATATATTTGTATTAATTGAGAATTC  1139


seq1: chr4_14014258_14015342
seq2: B6Ng01-222B02.g_69_1149

seq1  GAATTCCTGGCTGCTGCCTGGAAAGGGTCGCCTTGTGAAAGTGTTTAGGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTGGCTGCTGCCTGGAAAGGGTCGCCTTGTGAAAGTGTTTAGGT  50

seq1  AAGCAGCTTGTTACTTTGATAAAGGCCATGAGAGAGTGATGCTGTCCACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAGCTTGTTACTTTGATAAAGGCCATGAGAGAGTGATGCTGTCCACT  100

seq1  TATGTGCTTATAAAGGAGGTTAGGGGAAGGAGAGCACAGTCTTTGGTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTGCTTATAAAGGAGGTTAGGGGAAGGAGAGCACAGTCTTTGGTGCC  150

seq1  TCCTCCAAGTGTTAAGTGTTCCCAGCCTCCTTTCAGAACTGCTGCATGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCAAGTGTTAAGTGTTCCCAGCCTCCTTTCAGAACTGCTGCATGAG  200

seq1  TGAACTTACTCAGGAAAAACCATAGCCCTTGCTTCACTAAAACCAGTCTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAACTTACTCAGGAAAAACCATAGCCCTTGCTTCACTAAAACCAGTCTA  250

seq1  AACCGGTGTCATCCGGAGGGGGGCTGAAAGAGTTCATAGAAATTCTGGCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGGTGTCATCCGGAGGGGGGCTGAAAGAGTTCATAGAAATTCTGGCA  300

seq1  AAGCCTGCTAATCTACAGTTAACTTGTACAGCAAGGATTTAGGATGAGAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTGCTAATCTACAGTTAACTTGTACAGCAAGGATTTAGGATGAGAT  350

seq1  CAAACTTCATTGGAAAAAGAAAAGGAGCAACAGCATAGAGATGGAACGAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACTTCATTGGAAAAAGAAAAGGAGCAACAGCATAGAGATGGAACGAG  400

seq1  AAAGAGAAAAATTGGCCCCACGCCCCGGTGAACAGCTTAGTACTTGAAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGAGAAAAATTGGCCCCACGCCCCGGTGAACAGCTTAGTACTTGAAGT  450

seq1  GGGGCTTGAACCCTGATCCAGGAGACTTCAATCTCCCTTAAACCCACTCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTTGAACCCTGATCCAGGAGACTTCAATCTCCCTTAAACCCACTCC  500

seq1  CCAAGAGGGCACAGGGATGCCCGGGGTGCAGGGTTCCAGTGAGGGGTTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGGGCACAGGGATGCCCGGGGTGCAGGGTTCCAGTGAGGGGTTGA  550

seq1  GAGTGAGTCCACAGTTGCCTTTCTGAAGGAGCATGATCTGTGTGGAGTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTGAGTCCACAGTTGCCTTTCTGAAGGAGCATGATCTGTGTGGAGTCT  600

seq1  AGCATTGCAGCACAAAGCTCGAGGTTCCTAGGGAGGCTTTCCTCACCTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCATTGCAGCACAAAGCTCGAGGTTCCTAGGGAGGCTTTCCTCACCTCA  650

seq1  GCAAGGGTTCATTTGTCACATTTTTGTTTTTGACTATTTACTACCACACT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAGGGTTCATTTGTCACATTTTTGTTTTTGACTATTTACTACCACACT  700

seq1  GCAGAAGTGTTTGAGATCTTTTCCTTCTCAATCTCTCCCTCATTTCCATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAAGTGTTTGAGATCTTTTCCTTCTCAATCTCTCCCTCATTTCCATT  750

seq1  CAACACTCTACAGTTTGCCTTTCCCCCAGTGCATACAA-TTATCACCTCT  799
      |||||||||||||||||||||||||||||||||||||| |||||||||||
seq2  CAACACTCTACAGTTTGCCTTTCCCCCAGTGCATACAATTTATCACCTCT  800

seq1  CCATTCTAATTAGCTTCCAAGCTGCCTATATTGTCACCCCCACTTTTATG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTCTAATTAGCTTCCAAGCTGCCTATATTGTCACCCCCACTTTTATG  850

seq1  ATCC-TGTCTCCATATATTTTGATCTCCT-AATTGGCTTTGATGCAT-CC  896
      |||| |||||||||||||||||||||||| ||||||||||||||||| ||
seq2  ATCCTTGTCTCCATATATTTTGATCTCCTAAATTGGCTTTGATGCATCCC  900

seq1  ATTTTGAGAACTG-TTGCCAAGAAATTTTCTCCTTTTTAATATCTTTCCA  945
      ||||||||||||| |||||||| ||||||||||||||||||||| |||||
seq2  ATTTTGAGAACTGTTTGCCAAG-AATTTTCTCCTTTTTAATATC-TTCCA  948

seq1  GGGTTACTTTACACTCTATGTAATTTTTATTT-CTCCTTTTTTTTTTTTT  994
      ||||||||||||||||||||||  |||||||| ||||     ||| | ||
seq2  GGGTTACTTTACACTCTATGTA--TTTTATTTCCTCC----ATTTGTGTT  992

seq1  TTTTCCTATGTCCCTTTTCAAATCTGGTTTCCCACTCAACATAACTCAAA  1044
       | | | | ||||| |||||||||||| ||||||||||  || |||||| 
seq2  ATCTACGAGGTCCC-TTTCAAATCTGG-TTCCCACTCACAATTACTCAAT  1040

seq1  TCTGCTCTGCTGGCAGTGTAGGAAGTCTTCAAGAG-ATACTT  1085
        |||||||||| || ||   ||||||||| |||| ||||||
seq2  CTTGCTCTGCTGCCAATGGTAGAAGTCTTC-AGAGAATACTT  1081


| Home | SequenceCutter | Blast | Download |