BAC Information

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BAC

Clone NameB6Ng01-222G03
Chromosome4 (Build37)
Map Location 67,389,407 - 67,499,117
singlet/doubletdoublet
Overlap genenone
Upstream geneTlr4, LOC100039379, Hmgb1-rs18
Downstream geneLOC433715, Tcp1-ps1, Dbc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222G03.bB6Ng01-222G03.g
ACCGA037416GA037417
length1,133986
definitionB6Ng01-222G03.b B6Ng01-222G03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(67,389,407 - 67,390,538)(67,498,451 - 67,499,117)
sequence
gaattcacattctaagagatcaaagagtaccaagatgccttttttaggaa
cgttaacctgaagtacatgtctgggaatttctatgtgctttacacatttt
ccgatttggatgcatgagtctaaaatctccttattttctctctcatccag
tagaatgggaatggctgtcttcttgagtactagtaattcctatagaatga
atatcattaaaccctagtgtaatggggaataattttcaactccaggcaat
attaaacatgtttctgggaagaatggtaataaatttttcatgtccaaggg
cattttatgcaatgggcaaacttttatctcattaaccaggaggtaaatct
ctaactatgtatcagactggtagtaagttagtagcttttgattcataaga
agaattctggaaagtctacagggtagggagtcctgaaaagataaaggata
gtcctcacttttatctctctgttggtattcccagttaatacatttcattc
atttcaatagctgtcactgaaaagcagatccagtttaatgtgcttctttt
acaccaaaagtctctttcttcctataccacaggcatagcacatggttcag
ataatcaataaatgtcctacattacctatttactttatgtattctgtatg
attatgaaggaaagataatttttcttacatgtgatggctgagtgcatatc
atccataattattagcagcagcaactgcaatcattttaataactgcactt
gtagatgttcacatacacagtgctctagtatctaaagtacaataatagtt
atagaatagatatgtttgcatatgctgaagtgctaaggaagatttgtaga
aattgatgggtttagtggcaacatgggaactaccacatctcgagagattt
cttcttgccaagtgccagcctgcctgtctcattaagtctcccacaatcct
catgggattcattttgttttttggagatgaacagaagagaggcttctgca
agttcaaacagattgcccagtattttctgcatagtttaatggctacatca
tgtgaaattcaagcctagaatgatttctggacatccagagatatcctaaa
ccaccaggggtcatagaaaggacgaggctacca

gaattcagtgtggatcagagctgtttctatttgatggaaggacgcaaatc
ctaattgaatagaaataaagtctgataggagtttggtctgcacaatctga
gtgtactggccagaacagaatgtctaagcaatatacacagtgcagtagac
ttaattttcttcaggtgcagtattacatcagagcatttcaaatacccagg
gaatctgacctaaagcaaaaccctagaagagaaatttatattgcagggtc
aaagctgaaatttttttttcccaatgtgaatacaccaggctttctatgta
tgtttaaagtctcttgtagcttaaatatagaataaactaggatgcaacaa
tgtttaaattatcccacacttggaaatatatgagagaattaagagcatta
caggtatctgtctcacatctactcattagtaggcttacaaattcaattaa
atgtcctgtattattgtttattcatataagaacaaaatgagatagaatgc
tatttactagatgacatcattaatcttgattgctcaacagaacttgagaa
tgtctttctgttactaaaaataacatataccttagttacaggacatacag
aaaccaaggtggtgctgctcagtaaagcgtcttcttctggtggctagctt
tcataatactacaatgtgcaatccatgtccttcacagggaaagagaacag
ttttacataactgtggaccttttgttctataataatgataggaatggcaa
gctatgcctaggggcacaaaggttacacaaatgttttgagagtatacatc
aacttttggtcatatttaaggatatgaaatcaggagaaaacacatggctc
atgcagtatatataacaaacattcagctagagcctatcagaatccctctg
tgaacctattattgttactatgctaaaggaacagagtttcaaacttctct
acatttttaatctcagactcatcaagtgtgtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_67389407_67390538
seq2: B6Ng01-222G03.b_44_1176

seq1  GAATTCACATTCTAAGAGATCAAAGAGTACCAAGATGCCTTTTTTAGGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACATTCTAAGAGATCAAAGAGTACCAAGATGCCTTTTTTAGGAA  50

seq1  CGTTAACCTGAAGTACATGTCTGGGAATTTCTATGTGCTTTACACATTTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTTAACCTGAAGTACATGTCTGGGAATTTCTATGTGCTTTACACATTTT  100

seq1  CCGATTTGGATGCATGAGTCTAAAATCTCCTTATTTTCTCTCTCATCCAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGATTTGGATGCATGAGTCTAAAATCTCCTTATTTTCTCTCTCATCCAG  150

seq1  TAGAATGGGAATGGCTGTCTTCTTGAGTACTAGTAATTCCTATAGAATGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAATGGGAATGGCTGTCTTCTTGAGTACTAGTAATTCCTATAGAATGA  200

seq1  ATATCATTAAACCCTAGTGTAATGGGGAATAATTTTCAACTCCAGGCAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCATTAAACCCTAGTGTAATGGGGAATAATTTTCAACTCCAGGCAAT  250

seq1  ATTAAACATGTTTCTGGGAAGAATGGTAATAAATTTTTCATGTCCAAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAACATGTTTCTGGGAAGAATGGTAATAAATTTTTCATGTCCAAGGG  300

seq1  CATTTTATGCAATGGGCAAACTTTTATCTCATTAACCAGGAGGTAAATCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTATGCAATGGGCAAACTTTTATCTCATTAACCAGGAGGTAAATCT  350

seq1  CTAACTATGTATCAGACTGGTAGTAAGTTAGTAGCTTTTGATTCATAAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAACTATGTATCAGACTGGTAGTAAGTTAGTAGCTTTTGATTCATAAGA  400

seq1  AGAATTCTGGAAAGTCTACAGGGTAGGGAGTCCTGAAAAGATAAAGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATTCTGGAAAGTCTACAGGGTAGGGAGTCCTGAAAAGATAAAGGATA  450

seq1  GTCCTCACTTTTATCTCTCTGTTGGTATTCCCAGTTAATACATTTCATTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTCACTTTTATCTCTCTGTTGGTATTCCCAGTTAATACATTTCATTC  500

seq1  ATTTCAATAGCTGTCACTGAAAAGCAGATCCAGTTTAATGTGCTTCTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCAATAGCTGTCACTGAAAAGCAGATCCAGTTTAATGTGCTTCTTTT  550

seq1  ACACCAAAAGTCTCTTTCTTCCTATACCACAGGCATAGCACATGGTTCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACCAAAAGTCTCTTTCTTCCTATACCACAGGCATAGCACATGGTTCAG  600

seq1  ATAATCAATAAATGTCCTACATTACCTATTTACTTTATGTATTCTGTATG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATCAATAAATGTCCTACATTACCTATTTACTTTATGTATTCTGTATG  650

seq1  ATTATGAAGGAAAGATAATTTTTCTTACATGTGATGGCTGAGTGCATATC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATGAAGGAAAGATAATTTTTCTTACATGTGATGGCTGAGTGCATATC  700

seq1  ATCCATAATTATTAGCAGCAGCAACTGCAATCATTTTAATAACTGCACTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCATAATTATTAGCAGCAGCAACTGCAATCATTTTAATAACTGCACTT  750

seq1  GTAGATGTTCACATACACAGTGCTCTAGTATCTAAAGTACAATAATAGTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGATGTTCACATACACAGTGCTCTAGTATCTAAAGTACAATAATAGTT  800

seq1  ATAGAATAGATATGTTTGCATATGCTGAAGTGCTAAGGAAGATTTGTAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAATAGATATGTTTGCATATGCTGAAGTGCTAAGGAAGATTTGTAGA  850

seq1  AATTGATGGGTTTAGTGGCAACATGGGAACTACCACATCTCGAGAGATTT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTGATGGGTTTAGTGGCAACATGGGAACTACCACATCTCGAGAGATTT  900

seq1  CTTCTTGCCAAGTGCCAGCCTGCCTGTCTCATTAAGTCTCCCACAATCCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGCCAAGTGCCAGCCTGCCTGTCTCATTAAGTCTCCCACAATCCT  950

seq1  CATGGGATTCATTTTGTTTTTTGGAGATG-ACAGAAGAGAGGC-TCTGCA  998
      ||||||||||||||||||||||||||||| ||||||||||||| ||||||
seq2  CATGGGATTCATTTTGTTTTTTGGAGATGAACAGAAGAGAGGCTTCTGCA  1000

seq1  AGTTCAAACAGATTGCCCAGTA-TTTCTGCATAGTTT-ATGCCAACATCC  1046
      |||||||||||||||||||||| |||||||||||||| ||| | |||| |
seq2  AGTTCAAACAGATTGCCCAGTATTTTCTGCATAGTTTAATGGCTACAT-C  1049

seq1  ATGTGAAAATCAAG-CTAG-ATGATTTCTGGGACAT-CAGAGATATCTCA  1093
      |||||||| ||||| |||| ||||||||| |||||| |||||||||| | 
seq2  ATGTGAAATTCAAGCCTAGAATGATTTCT-GGACATCCAGAGATATC-CT  1097

seq1  AAACCACCATGTGGTCATAGAAAGGCACGAAGCCTACCA  1132
      ||||||||| | ||||||||||||| ||| || ||||||
seq2  AAACCACCA-GGGGTCATAGAAAGG-ACG-AGGCTACCA  1133


seq1: chr4_67498451_67499117
seq2: B6Ng01-222G03.g_66_732 (reverse)

seq1  ACATTGTAGTATTATGAAAGCTAGCCACCAGAAGAAGACGCTTTACTGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTGTAGTATTATGAAAGCTAGCCACCAGAAGAAGACGCTTTACTGAG  50

seq1  CAGCACCACCTTGGTTTCTGTATGTCCTGTAACTAAGGTATATGTTATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCACCACCTTGGTTTCTGTATGTCCTGTAACTAAGGTATATGTTATTT  100

seq1  TTAGTAACAGAAAGACATTCTCAAGTTCTGTTGAGCAATCAAGATTAATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTAACAGAAAGACATTCTCAAGTTCTGTTGAGCAATCAAGATTAATG  150

seq1  ATGTCATCTAGTAAATAGCATTCTATCTCATTTTGTTCTTATATGAATAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCATCTAGTAAATAGCATTCTATCTCATTTTGTTCTTATATGAATAA  200

seq1  ACAATAATACAGGACATTTAATTGAATTTGTAAGCCTACTAATGAGTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATAATACAGGACATTTAATTGAATTTGTAAGCCTACTAATGAGTAGA  250

seq1  TGTGAGACAGATACCTGTAATGCTCTTAATTCTCTCATATATTTCCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAGACAGATACCTGTAATGCTCTTAATTCTCTCATATATTTCCAAGT  300

seq1  GTGGGATAATTTAAACATTGTTGCATCCTAGTTTATTCTATATTTAAGCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGATAATTTAAACATTGTTGCATCCTAGTTTATTCTATATTTAAGCT  350

seq1  ACAAGAGACTTTAAACATACATAGAAAGCCTGGTGTATTCACATTGGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGAGACTTTAAACATACATAGAAAGCCTGGTGTATTCACATTGGGAA  400

seq1  AAAAAAATTTCAGCTTTGACCCTGCAATATAAATTTCTCTTCTAGGGTTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAATTTCAGCTTTGACCCTGCAATATAAATTTCTCTTCTAGGGTTT  450

seq1  TGCTTTAGGTCAGATTCCCTGGGTATTTGAAATGCTCTGATGTAATACTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTTAGGTCAGATTCCCTGGGTATTTGAAATGCTCTGATGTAATACTG  500

seq1  CACCTGAAGAAAATTAAGTCTACTGCACTGTGTATATTGCTTAGACATTC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGAAGAAAATTAAGTCTACTGCACTGTGTATATTGCTTAGACATTC  550

seq1  TGTTCTGGCCAGTACACTCAGATTGTGCAGACCAAACTCCTATCAGACTT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCTGGCCAGTACACTCAGATTGTGCAGACCAAACTCCTATCAGACTT  600

seq1  TATTTCTATTCAATTAGGATTTGCGTCCTTCCATCAAATAGAAACAGCTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTATTCAATTAGGATTTGCGTCCTTCCATCAAATAGAAACAGCTC  650

seq1  TGATCCACACTGAATTC  667
      |||||||||||||||||
seq2  TGATCCACACTGAATTC  667


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