BAC Information

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BAC

Clone NameB6Ng01-222J06
Chromosome4 (Build37)4 (Build37)
Map Location 61,094,733 - 61,095,34059,959,156 - 59,960,200
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneLOC620846, Mup2, LOC620882, LOC100041687, LOC667221, LOC100038948, LOC620997, Mup1, LOC620942, LOC100039008, LOC100039028, LOC620982, LOC100039054, LOC100039063, LOC667234, LOC100039089, LOC667239, LOC100039116, LOC667242
Downstream geneLOC100039150, LOC100039019, LOC100039177, LOC621093, LOC100039206, LOC621127, LOC100039228, LOC384021, LOC100039247, LOC667278, Mup5, LOC435785, LOC667295, LOC100039305, LOC546832, OTTMUSG00000007485, Mup3, LOC100039345, OTTMUSG00000000231, Zfp37, Slc31a2, Fkbp15, Slc31a1, Cdc26, Prpf4, Rnf183
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-222J06.bB6Ng01-222J06.g
ACCGA037558GA037559
length1,1641,054
definitionB6Ng01-222J06.b B6Ng01-222J06.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(61,094,733 - 61,095,340)(59,959,156 - 59,960,200)
sequence
gaattcaaaatctcagaccaagcaatccctttgtaaagtaagaagacagg
gaagaagtgatggttgacacagtagaactgtacaattctttgtgatctgg
gaatacattacagctaagggaacatagagggttggggaaaactgtcacaa
aagcccaaggatgccacatgagcatgtacccacagataacaagggctgaa
gcagggtgaatttgaagacagatgcccaaccttacatgacatacagaaag
aacacaaatacctgtagctgctgtgacaggaccaaccattctaaatatca
aagcagttgttgatacctaaggactggtctgactgctagatctaggagtt
tcaacttgcaaaagctggcttgatgctcatggttggcccaaatgtcttat
caggaataaataacctcacaaaatatcaacattaggcaccatcctcctca
gattggaaacacaagataattgtgccatctaaaatggtgtctgtcctctg
gctaaaatcagtgacagctacttctttaccaatagcagagttagctttat
gtttgtgtccacttattataaataggatataatgggctatttaatcactg
aagtgtaatttcccaattacacccaacctagagcttattgagacattcct
taaccctataggagttccttatttcattccttttataaagattatcagct
gtgcaaaggccagcacaggaaagaactgttctcccaggagtgctttcact
caagggctgggaggtgaagtagacactttctctccattaacactccaggg
aatgaccagcaagggtgtgcagggcacagaaacagtggagcagctgggac
aggatcccttcagtcaccatctactcccagagcttgggctgttccacagc
cctctgtacacaagttcagccaggatagagcgttctccaaggggtatagg
cacaggctttacagatgcacagaagggacaagctcgagccagagactaca
aggccattttaccacagaaggtaaccagatggcaaaggcaggcagacctt
acatacagtaccacgatattggcatcatcagaattccagtatccaacacg
cagtccttgtatcccccaacactagaaggcaagttttgatttaaatccac
tctcatgaatgctg
gaattcagataccagaaagctggtgccttgaattacatggtggcaaaaca
tttggccaagtggttgttgattactacacactgataaaggctgtggagca
agaggactaaagagaaaactcaactgttttgttggtgattacttatcttc
agcaagtcctaccgaagcaaacatgtaggctggatcctgccaagtgggaa
gtgaatgttggggcaaaagcacagctctcacttccaaccagataagaaag
agtttattctgaagctggccaaatagcgcagcagagaacggagctgacca
ccaagcctgatgacctgagtataatccctagaaccctcactggcaggaga
gaatgaactccaaaagatgtctctgacctccaaacataccctccctcaac
aataaatgtgtgtgcttgtgtgtgtatctatgggtgggtgagagatagac
agagagagagagagagacagagagacaaagacagagagggtcagagagac
agagacatagagagatatatgttattctagagacaaatattagtgaccat
ggtacaggaacacacttttacactaccccaaataccatattccaacatgg
caacaagtctataactcttcatagtgttataacaaagggtaaaccaagag
actttaaaaacgcattggtgggaacatcaggatcttagaaaacgcactgg
gtcacatcaaagtggaggaaactctgctacaggcctcagatgttgaaaat
attatagacctgatttacctaaaagtcataagcatattagagtcacccac
agaggcagggaatgaaggatttagggggttaatggttagcctggagagtt
tagctccaggtctgcatcatttccaccttctcttacagtgattgaagtct
taaatgagttaatctgtctgcttgcctgggaagcatcagctcagggaaag
tgagtgtcactgagtcaggccttccttgactgcagctcactccagccctg
actggagtccttgctttgagctccctggaactgaagcatcttaaatgatg
tctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_61094733_61095340
seq2: B6Ng01-222J06.b_614_1209 (reverse)

seq1  CAGCA-TCATGAGATGTGATTTTAAATCCAAAACTTGCTTTTCTAGGTGT  49
      ||||| |||||||| |||  ||||||| ||||||||||  ||||| ||||
seq2  CAGCATTCATGAGA-GTGGATTTAAAT-CAAAACTTGC-CTTCTA-GTGT  46

seq1  TGGGGGTATCAAGGACTTGCGGTGGTGGGATAACTGG-ATTCTGATGATG  98
      ||||||   ||||||| ||||   || |||| ||||| ||||||||||||
seq2  TGGGGGATACAAGGAC-TGCG--TGTTGGAT-ACTGGAATTCTGATGATG  92

seq1  CCAAGTATCATTGGTTACTGTATGTAAGGTTCTTGCCCCTGCCCTTTGCC  148
      |||| |||| |  | |||||||||||||| |||    |||| ||||||||
seq2  CCAA-TATCGT--GGTACTGTATGTAAGG-TCT---GCCTG-CCTTTGCC  134

seq1  ATCTGGTTACC-TCTGGTGTTAAATGGCCTTGTAGTCTCTGGCTCGAGCT  197
      ||||||||||| ||||  || |||||||||||||||||||||||||||||
seq2  ATCTGGTTACCTTCTGTGGTAAAATGGCCTTGTAGTCTCTGGCTCGAGCT  184

seq1  TGTCCCTTCTGTGCCTCTGT-AAGCCTGTGCCTATACCCCTTGGAGAACG  246
      |||||||||||||| ||||| |||||||||||||||||||||||||||||
seq2  TGTCCCTTCTGTGCATCTGTAAAGCCTGTGCCTATACCCCTTGGAGAACG  234

seq1  CTCTATCCTGGCTGAACTTGTGTACAGAGGGCTGTGGAACAGCCCAAGCT  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTATCCTGGCTGAACTTGTGTACAGAGGGCTGTGGAACAGCCCAAGCT  284

seq1  CTGGGAGTAGATGGTGACTGAAGGGATCCTGTCCCAGCTGCTCCACTGTT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGAGTAGATGGTGACTGAAGGGATCCTGTCCCAGCTGCTCCACTGTT  334

seq1  TCTGTGCCCTGCACACCCTTGCTGGTCATTCCCTGGAGTGTTAATGGAGA  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTGCCCTGCACACCCTTGCTGGTCATTCCCTGGAGTGTTAATGGAGA  384

seq1  GAAAGTGTCTACTTCACCTCCCAGCCCTTGAGTGAAAGCACTCCTGGGAG  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTGTCTACTTCACCTCCCAGCCCTTGAGTGAAAGCACTCCTGGGAG  434

seq1  AACAGTTCTTTCCTGTGCTGGCCTTTGCACAGCTGATAATCTTTATAAAA  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGTTCTTTCCTGTGCTGGCCTTTGCACAGCTGATAATCTTTATAAAA  484

seq1  GGAATGAAATAAGGAACTCCTATAGGGTTAAGGAATGTCTCAATAAGCTC  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATGAAATAAGGAACTCCTATAGGGTTAAGGAATGTCTCAATAAGCTC  534

seq1  TAGGTTGGGTGTAATTGGGAAATTACACTTCAGTGATTAAATAGCCCATT  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGTTGGGTGTAATTGGGAAATTACACTTCAGTGATTAAATAGCCCATT  584

seq1  ATATCCTATTTA  608
      ||||||||||||
seq2  ATATCCTATTTA  596

seq1: chr4_59959156_59960200
seq2: B6Ng01-222J06.g_67_1120

seq1  GAATTCAGATACCAGAAAGCTGGTGCCTTGAATTACATGGTGGCAAAACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGATACCAGAAAGCTGGTGCCTTGAATTACATGGTGGCAAAACA  50

seq1  TTTGGCCAAGTGGTTGTTGATTACTACACACTGATAAAGGCTGTGGAGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGGCCAAGTGGTTGTTGATTACTACACACTGATAAAGGCTGTGGAGCA  100

seq1  AGAGGACTAAAGAGAAAACTCAACTGTTTTGTTGGTGATTACTTATCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGACTAAAGAGAAAACTCAACTGTTTTGTTGGTGATTACTTATCTTC  150

seq1  AGCAAGTCCTACCGAAGCAAACATGTAGGCTGGATCCTGCCAAGTGGGAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTCCTACCGAAGCAAACATGTAGGCTGGATCCTGCCAAGTGGGAA  200

seq1  GTGAATGTTGGGGCAAAAGCACAGCTCTCACTTCCAACCAGATAAGAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAATGTTGGGGCAAAAGCACAGCTCTCACTTCCAACCAGATAAGAAAG  250

seq1  AGTTTATTCTGAAGCTGGCCAAATAGCGCAGCAGAGAACGGAGCTGACCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTATTCTGAAGCTGGCCAAATAGCGCAGCAGAGAACGGAGCTGACCA  300

seq1  CCAAGCCTGATGACCTGAGTATAATCCCTAGAACCCTCACTGGCAGGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGCCTGATGACCTGAGTATAATCCCTAGAACCCTCACTGGCAGGAGA  350

seq1  GAATGAACTCCAAAAGATGTCTCTGACCTCCAAACATACCCTCCCTCAAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGAACTCCAAAAGATGTCTCTGACCTCCAAACATACCCTCCCTCAAC  400

seq1  AATAAATGTGTGTGCTTGTGTGTGTATCTATGGGTGGGTGAGAGATAGAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAATGTGTGTGCTTGTGTGTGTATCTATGGGTGGGTGAGAGATAGAC  450

seq1  AGAGAGAGAGAGAGAGACAGAGAGACAAAGACAGAGAGGGTCAGAGAGAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGACAGAGAGACAAAGACAGAGAGGGTCAGAGAGAC  500

seq1  AGAGACATAGAGAGATATATGTTATTCTAGAGACAAATATTAGTGACCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGACATAGAGAGATATATGTTATTCTAGAGACAAATATTAGTGACCAT  550

seq1  GGTACAGGAACACACTTTTACACTACCCCAAATACCATATTCCAACATGG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTACAGGAACACACTTTTACACTACCCCAAATACCATATTCCAACATGG  600

seq1  CAACAAGTCTATAACTCTTCATAGTGTTATAACAAAGGGTAAACCAAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAAGTCTATAACTCTTCATAGTGTTATAACAAAGGGTAAACCAAGAG  650

seq1  ACTTTAAAAACGCATTGGTGGGAACATCAGGATCTTAGAAAACGCACTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTAAAAACGCATTGGTGGGAACATCAGGATCTTAGAAAACGCACTGG  700

seq1  GTCACATCAAAGTGGAGGAAACTCTGCTACAGGCCTCAGATGTTGAAAAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACATCAAAGTGGAGGAAACTCTGCTACAGGCCTCAGATGTTGAAAAT  750

seq1  ATTATAGACCTGATTTACCTAAAAGTCATAAGCATATTAGAGTCACCCAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATAGACCTGATTTACCTAAAAGTCATAAGCATATTAGAGTCACCCAC  800

seq1  AGAGGCAGGGAATGAAGGATTTAGGGGGTTAATGG-TAGCCTGGAGAGTT  849
      ||||||||||||||||||||||||||||||||||| ||||||||||||||
seq2  AGAGGCAGGGAATGAAGGATTTAGGGGGTTAATGGTTAGCCTGGAGAGTT  850

seq1  TAGCTCCAGGTCTGCATCA-TTCCACC-TCTC-TACAGTGATTGAAGTCT  896
      ||||||||||||||||||| ||||||| |||| |||||||||||||||||
seq2  TAGCTCCAGGTCTGCATCATTTCCACCTTCTCTTACAGTGATTGAAGTCT  900

seq1  T-AATGAGTTAATCTGTCTGCTTGCCTGGG-AGCATCAGCTCAGGGGAAG  944
      | |||||||||||||||||||||||||||| ||||||||||||||| |||
seq2  TAAATGAGTTAATCTGTCTGCTTGCCTGGGAAGCATCAGCTCAGGGAAAG  950

seq1  TGAGTGTCACTGAGTCAGGCCTCCCTTGACTGCAGCCTCACTCCAG-CCT  993
      |||||||||||||||||||||| |||||||||||| |||||||||| |||
seq2  TGAGTGTCACTGAGTCAGGCCTTCCTTGACTGCAG-CTCACTCCAGCCCT  999

seq1  GACT-GAGTCCCTGC-TTGAGCATCCTGG-ACTGAAGCAATCTAAATGAT  1040
      |||| |||||| ||| ||||||  ||||| |||||||||   ||||||||
seq2  GACTGGAGTCCTTGCTTTGAGCTCCCTGGAACTGAAGCATCTTAAATGAT  1049

seq1  GTCTG  1045
      |||||
seq2  GTCTG  1054