BAC Information

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BAC

Clone NameB6Ng01-223C05
Chromosome4 (Build37)
Map Location 146,747,289 - 146,959,611
singlet/doubletdoublet
Overlap geneEG666588, LOC627701, OTTMUSG00000010671, LOC545718, OTTMUSG00000010673
Upstream geneLOC433791, Rex2, LOC100043012, LOC100041461, LOC630093, OTTMUSG00000010105, LOC666445, MGC117846, OTTMUSG00000010694, LOC626480, LOC666474, LOC666482, LOC434514, LOC626288, LOC666498, LOC100043034, LOC666514, LOC100041561, LOC100041570, OTTMUSG00000010657, LOC384087, LOC666546, LOC666557, LOC545716, LOC666574, LOC666581
Downstream gene2610305D13Rik, LOC666618, LOC100043100, LOC666640, LOC194189, LOC666652, LOC100041677, LOC277692, MGC67181, D4Wsu114e, Fv1, Mfn2, Plod1, 2510039O18Rik, Nppb, Nppa, Clcn6, Mthfr, LOC433806, Agtrap, 2610109H07Rik, Mad2l2, Fbxo6, Fbxo44, Fbxo2, Ptchd2, Ubiad1, Frap1, Angptl7, Exosc10, LOC100043151
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223C05.bB6Ng01-223C05.g
ACCGA037967GA037968
length1,0061,001
definitionB6Ng01-223C05.b B6Ng01-223C05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(146,747,289 - 146,748,278)(146,958,811 - 146,959,611)
sequence
gaattctttctaggaaattttttcactgtgacattaagtttgagactctt
tttctactttatcttctgttttattgattctatcttgttttatgttaagg
tccttgatccacctggacttgtgctttgtgcacgtttatacaaatgtatc
tattttcagttttccacatacagactgccagttagaccaacatcaggtat
tgaagattttgtcttttatccattatatatttttggcttctttgtcaaag
atcaattgtctgtaagtttgtggtttaattactaggccttcaattgtatt
ccattgatcaatctgtctgtctctgtatcagtacatgcagtttttatcac
tattgctctgaagtaacctgtaacgtttacaaaaagaaatgaagtccact
gttttttaaacatagcagctcctatgtagtttgcttgggtgtgctttctg
gttgctaaatctagaaatagaggctagttttaagtgagaaattacctttc
tgtttttcagttccttcacagactaagtttggctgtcctggaaatatctc
tctggatagatcttgtacacttaggtgtgtcttgctctgtctcctgaatc
ctggtgttaaagatgtgtcccatgatacctggacctaacattttcctcat
tagaatttgatctgttccaggcttttcttggactttgaaaactgccttca
ttttcaaactcaaaccagaatcttaagtgggtcaaattttgtctgagatc
atcactctctcacttccctggtactcctttattcctcacaccatgagcct
ttgtttttaaaccatgccttttccctttactgactcattagtgtagctac
ctctgttatttttaggtacttcgagccccttatacaatcatattgcatgt
ttatatttgggatagttgagaaatgttgggcagtgagtgcagggaattaa
agggaatcccatgtcccaccagagcttccagttgctctgggcagtgacag
cactct
gaattcaaattattcttaggtggggagactaccctgcggttcaatgaatg
atttctcagttttaagacaattggaaaaatgtgttttcctatgctttttt
tttttttaaagatttatttatttatttattatatgtaagtacattgtagc
tgtcttcagacactccagaagagggggtcagatcttgttacggatggttg
tgagccaccatgtggttgctgggatttgaactctgcaccttcggaagagc
agtcgggtgctctaacccactgagccatctcaccagcccctttcctatgc
ttttaagcaaccactacgacagggtcgttacatcccaaagagattgttat
ccaccagttgaaaatcattactattaactttatgatacaggtttgcaaaa
atattcatgacttctgcgtatgttttatgtgaggcatttcctgggaagat
gcaacatatattcatctcagtatcccaaatgcaaactgaaaacaaccaaa
gcaaacttgtagaatctttcagctttattggagttagttacaggacaata
ggaaaggagtttttgagcagatcacaagagaatcagagtcacttgttatc
cttaacaagcattttgagaagaattatgattactggatactcgaagcaca
cttcacatctgtaagcatatttataggataaagaatatgctgtctgggtg
gctcagtttgccaggtactcttttttaaagtataacttttcttaactgga
tcatttaaattaaatatacagaatgttatcagttttattagatattttga
ggattgcattaaagaccttaaatagttcccttttgaaatggattacttct
gtctcattaaaagtgttatacaatactatcttctgactccccaacttgtc
ttcatcttgtaccgttggaggatgaacctagtataaaggtgtaatgaaaa
aggcttcaccatttcacatttttcagagtttcttcacagctattaatagt
t
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_146747289_146748278
seq2: B6Ng01-223C05.b_47_1039

seq1  GAATTCTTTCTAGGAAATTTTTTCACTGTGACATTAAGTTTGGGACTCTT  50
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  GAATTCTTTCTAGGAAATTTTTTCACTGTGACATTAAGTTTGAGACTCTT  50

seq1  TTTCTACTTTATCTTCTATTTTATTGATTCTATCTTGTTTTATGTTAAGG  100
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  TTTCTACTTTATCTTCTGTTTTATTGATTCTATCTTGTTTTATGTTAAGG  100

seq1  TCCTTGATCCACCTGGACTTGTGCTTTGTGCACGTTTATACAAATGTATC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTGATCCACCTGGACTTGTGCTTTGTGCACGTTTATACAAATGTATC  150

seq1  TATTTTCAGTTTTCCACATACAGACTGCCAGTTAGACCAACATCAGGTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTCAGTTTTCCACATACAGACTGCCAGTTAGACCAACATCAGGTAT  200

seq1  TGAAGATTTTGTCTTTTATCCATTATATATTTTTGGCTTCTTTGTCAAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATTTTGTCTTTTATCCATTATATATTTTTGGCTTCTTTGTCAAAG  250

seq1  ATCAATTGTCTGTAAGTTTGTGGTTTAATTACTAGGCCTTCAATTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAATTGTCTGTAAGTTTGTGGTTTAATTACTAGGCCTTCAATTGTATT  300

seq1  CCATTGATCAATCTGTCTGTCTCTGTATCAGTACATGCAGTTTTTATCAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGATCAATCTGTCTGTCTCTGTATCAGTACATGCAGTTTTTATCAC  350

seq1  TATTGCTCTGAAGTAACCTGTAACGTTTACAAAAAGAAATGAAGTCCACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGCTCTGAAGTAACCTGTAACGTTTACAAAAAGAAATGAAGTCCACT  400

seq1  GTTTTTTAAACATAGCAGCTCCTATGTAGTTTGCTTGGGTGTGCTTTCTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTAAACATAGCAGCTCCTATGTAGTTTGCTTGGGTGTGCTTTCTG  450

seq1  GTTGCTAAATCTAGATATAGAGGCTAGTTTTAAGTGAGAAATTACCTTTC  500
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  GTTGCTAAATCTAGAAATAGAGGCTAGTTTTAAGTGAGAAATTACCTTTC  500

seq1  TGTTTTTTCAGTTCCTTCACAGACTAAGTTTGGCTGTCCTGGAAATATCT  550
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TG-TTTTTCAGTTCCTTCACAGACTAAGTTTGGCTGTCCTGGAAATATCT  549

seq1  CTCTGGATAGATCTTGTACACTTAGGTGTGTCTTGCTCTGTCTCCTGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGGATAGATCTTGTACACTTAGGTGTGTCTTGCTCTGTCTCCTGAAT  599

seq1  CCTGGTGTTAAAGATGTGTCCCATGATACCTGGATCTAACATTTTCCTCA  650
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  CCTGGTGTTAAAGATGTGTCCCATGATACCTGGACCTAACATTTTCCTCA  649

seq1  TTAGAATTTGATCTGTTCCAGGCTTTTCTTGGACTTTGAAAACTGCCTTC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAATTTGATCTGTTCCAGGCTTTTCTTGGACTTTGAAAACTGCCTTC  699

seq1  ATTTTCAAACTCAAACCAGAATCTTAAGTGGGTCAAATTTTGTCTGAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCAAACTCAAACCAGAATCTTAAGTGGGTCAAATTTTGTCTGAGAT  749

seq1  CATCACTCTCTCACTT-CCTGGTACTCCTTTATTCCTCACACCATGAGCC  799
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CATCACTCTCTCACTTCCCTGGTACTCCTTTATTCCTCACACCATGAGCC  799

seq1  -TTGTTTTTAAACCATGCC-TTTCCCTTTACTGACTCATTAGTGTAGCTA  847
       |||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TTTGTTTTTAAACCATGCCTTTTCCCTTTACTGACTCATTAGTGTAGCTA  849

seq1  CCTCTG-TAATTTTAGGTACTTCGAGCCCCTTATACAAATCATATTGCAT  896
      |||||| || |||||||||||||||||||||||||| |||||||||||||
seq2  CCTCTGTTATTTTTAGGTACTTCGAGCCCCTTATAC-AATCATATTGCAT  898

seq1  GTTTATATTTTGGATAGTTGAGAAATGTTGGGCAGTGAGTGCAGGGAATT  946
      |||||||||| ||||||||||||||||||||||||||||||||||||| |
seq2  GTTTATATTTGGGATAGTTGAGAAATGTTGGGCAGTGAGTGCAGGGAA-T  947

seq1  TAAAGGGAATCCCATGTCCCACCAGAGC-TCCAG-TGCTCTGGGCA  990
      |||||||||||||||||||||||||||| ||||| |||||||||||
seq2  TAAAGGGAATCCCATGTCCCACCAGAGCTTCCAGTTGCTCTGGGCA  993

seq1: chr4_146958811_146959611
seq2: B6Ng01-223C05.g_67_1067 (reverse)

seq1  AACTATTTAT-GCTGTG-AGAAACTCTG-AAAATGTGAAAATGTAGAAAG  47
      ||||||| || |||||| |||||||||| |||||||| |||||  |||  
seq2  AACTATTAATAGCTGTGAAGAAACTCTGAAAAATGTG-AAATGGTGAAGC  49

seq1  C-TTTTCATGACACCTTTTTACT-TGTTCACCCTCAAATGTTACCAGATG  95
      | ||||||| |||||||| ||||  ||||| |||| || | ||| |||||
seq2  CTTTTTCATTACACCTTTATACTAGGTTCATCCTCCAACGGTACAAGATG  99

seq1  AAGACAAGTTGGGAAGTCAGAAGATAGTATTGTGTAACACTTTCATTGAG  145
      ||||||||||||| ||||||||||||||||||| ||||||||| | ||||
seq2  AAGACAAGTTGGGGAGTCAGAAGATAGTATTGTATAACACTTTTAATGAG  149

seq1  ACTGAAATAATCCATTTCAAAGGAAAACTATTTAAGGTCTTTAATGCAAT  195
      || ||| |||||||||||||| |  |||||||||||||||||||||||||
seq2  ACAGAAGTAATCCATTTCAAAAGGGAACTATTTAAGGTCTTTAATGCAAT  199

seq1  CCTCAAAATATCTAATAAAACTGATAACATTCTGTATATTTAATTTAAAT  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCAAAATATCTAATAAAACTGATAACATTCTGTATATTTAATTTAAAT  249

seq1  GATCCAATTAAGAAAAGTTATAC-TTAAAAAAGAGTACCTGGCAAACTGA  294
      |||||| |||||||||||||||| ||||||||||||||||||||||||||
seq2  GATCCAGTTAAGAAAAGTTATACTTTAAAAAAGAGTACCTGGCAAACTGA  299

seq1  GCCACCCAGACAGCATATTCTTTATCCTATAAATATGCTTACAGATGTGA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCACCCAGACAGCATATTCTTTATCCTATAAATATGCTTACAGATGTGA  349

seq1  AGTGTGCTTCGAGTATCTACTAATCAGAATTCTTCTC-AAATGCTTGTTT  393
      ||||||||||||||||| | |||||| |||||||||| ||||||||||| 
seq2  AGTGTGCTTCGAGTATCCAGTAATCATAATTCTTCTCAAAATGCTTGTT-  398

seq1  GTCATTATAGGATAACAAATGACTCTGAGTTTCTTGTGATCTGGTCAACA  443
              |||||||||| ||||||||| | |||||||||||| |||| |
seq2  -------AAGGATAACAAGTGACTCTGATTCTCTTGTGATCTGCTCAAAA  441

seq1  ACTCCTTTCCTATTGTCCTGTAACTAACTCCAATAAAGCTGAAAGATTCA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  ACTCCTTTCCTATTGTCCTGTAACTAACTCCAATAAAGCTGAAAGATTCT  491

seq1  ACAAGTTTGCTTTGGTTGTTTTCAATTTACACTTGGGATACTCAGATGAA  543
      |||||||||||||||||||||||| ||| || |||||||||| |||||||
seq2  ACAAGTTTGCTTTGGTTGTTTTCAGTTTGCATTTGGGATACTGAGATGAA  541

seq1  TATATGTTGCATCTTCCCAGGAAATGCCTCACATAAAACATATGCAGAAG  593
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TATATGTTGCATCTTCCCAGGAAATGCCTCACATAAAACATACGCAGAAG  591

seq1  TCATGAATATTTATTTTTGCAAACCTGTATCATAAAGTTAATAGTAATGA  643
      |||||||    |||||||||||||||||||||||||||||||||||||||
seq2  TCATGAA----TATTTTTGCAAACCTGTATCATAAAGTTAATAGTAATGA  637

seq1  TTTTCAACTGGTGGATAACAATCTCTTTGGGATGTAATGACCGTGTCATA  693
      ||||||||||||||||||||||||||||||||||||| |||| |||| ||
seq2  TTTTCAACTGGTGGATAACAATCTCTTTGGGATGTAACGACCCTGTCGTA  687

seq1  GTGGTTGCTT----------------------------------------  703
      ||||||||||                                        
seq2  GTGGTTGCTTAAAAGCATAGGAAAGGGGCTGGTGAGATGGCTCAGTGGGT  737

seq1  --------------------------------------------------  703
                                                        
seq2  TAGAGCACCCGACTGCTCTTCCGAAGGTGCAGAGTTCAAATCCCAGCAAC  787

seq1  --------------------------------------------------  703
                                                        
seq2  CACATGGTGGCTCACAACCATCCGTAACAAGATCTGACCCCCTCTTCTGG  837

seq1  --------------------------------------------------  703
                                                        
seq2  AGTGTCTGAAGACAGCTACAATGTACTTACATATAATAAATAAATAAATA  887

seq1  ----------------AAAAGCATAGGAAAACACATTTTTCCAATTGTCT  737
                      ||||||||||||||||||||||||||||||||||
seq2  AATCTTTAAAAAAAAAAAAAGCATAGGAAAACACATTTTTCCAATTGTCT  937

seq1  TAAAACTGAGAAATCATTTATTGAACTGCAGGGTAGTTTGCCCACCTAAG  787
      |||||||||||||||||| ||||||| |||||||||| | ||||||||||
seq2  TAAAACTGAGAAATCATTCATTGAACCGCAGGGTAGTCTCCCCACCTAAG  987

seq1  AATAATTTGAATTC  801
      ||||||||||||||
seq2  AATAATTTGAATTC  1001