BAC Information

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BAC

Clone NameB6Ng01-223I18
Chromosome4 (Build37)
Map Location 38,418,482 - 38,574,324
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC277771, LOC100039448
Downstream geneLOC665520, LOC100039487, 1700009N14Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-223I18.bB6Ng01-223I18.g
ACCGA038262GA038263
length1,1281,131
definitionB6Ng01-223I18.b B6Ng01-223I18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(38,573,194 - 38,574,324)(38,418,482 - 38,419,624)
sequence
gaattcagagtggggatgttttcattcaatctcttaaaattaggcagtca
tgatgttactagtgagcttacagaaatatataaaatacactcattttaag
gtttttaatcaaacttccatcctcccatcaccatttagcatgtagttctc
acaacacatagaaatgagccatggttcagaaatgatcttgcaatcatggg
caagtagcaatgagaggagatctgtttttcagagagttaaaaaaccaatc
aacaaaagatgtcttaaattgaactaaagcaggctgaaagatatggttac
tgatgtcaaacaaaaactcttaactgcacatttgattgatatgatatggt
gagatacagaaaaatgaagcaaagagatcatcagagactacagaactaaa
gtcctagagaatggcctcattttgagaagtacaagtcttcctttcagggt
tccattaaaagaaacaaaaagtgtgtctttaacaaagaaaccatgaaaag
ataataaaataacaaataaataatagattattttctttttcatcatctct
ctaaagaaacttcttaattaggaaccattgattcttataggttctagaat
atttcactaatgggttcctgttttactaattaacaataattacagattac
tacaactctcattatagctagaaaatgacagtgtaatagaactcccacac
ttcacggattttgtgtttgagatttatattacaaaatgcagctttcttaa
aatatggtaagattagattaaatgtcattagaaagaaaatactaagaact
ttcaagaaagaatagcattttgggaagggtcaataccttccccaaatcct
ctaaagtatcgtgaggaataaagttgggatacaacatttttgatggcatt
agtaggtagttttactcaaccctaagtgtaaaaaatatttttcatatgga
aaatgctctacagatgctcagcatgcaaaatcatagacatttactatttt
atatggtagagtgtactgtcagcgtgaataaagggaaataactagatgtc
ttctaaatgtctcattttatgtgttgatcagtagagcccgactgtagatt
catgaactacagcttgtggattcatttt

gaattcctttacaaggaatgcagagaagcatgacgtctgtgagtctgcct
tgtttatctatctcacagaaaagcagagtgagaaaatgtatctttaccca
taacatatcttttatctttcagggtactttatgaaaatttattttagtag
ttgaatacactaagctttgattatcatttgcctttttaaaacagatttct
aggaatttgtacagaggaattttaatcctgcaacctggctgttctggata
tattcaatcggcttttaggtttgtggatctggctggagtgcaggcaaacc
acatttaatcattgtggctggaacacaaatactttcagtatataccttta
atgtagaaggaagcagccatgtttgaaattgacatctaactgagagacag
acaaactgaaaaatcagaaagatttaacagaatgagtcagagatgggata
agctcagctctcatgtcgttcagtgcaggtcagaatagacagttaaagcc
agaaaattagaaagaaccacaaattgaaataaactgcaggagttagttta
agtccaagcagtacaactcagctgggagaagccagattgaatcagtcagc
ttagagaggagtttgtatcagaacaattgagttgaaccagccagccagag
ttcaaaaagaactagaaagaatgagcttattcagcagaaagtgtctaaga
agccaattacatcaggagaataaaagctagatttacatgtttgtgttatg
ttaaaaattaaatttagtaaaaaaatgatttctggcataaattaccatga
aaaataatatggctgtgtaataggtaaaaataagttcatacaaataacgg
atgaccttttttttcttattgttattttaatgattctaaattggcatgat
tacactaggaaacatctgcgattttgaggttgaaaaaagattaagttaaa
acaatttccttctcagtcaagtcatggagttacctttttatactgtagaa
aagtgtaaatcactgaagtcagctttctccctttctagatgactttatac
atctacttacatgatatcatgcatagttactgcctactgatacaggccta
tcttgtgtagtacaatggctaatccttaggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr4_38573194_38574324
seq2: B6Ng01-223I18.b_42_1169 (reverse)

seq1  AAAAT---TCCACAAAGCTGTAGTTTCATGAAATCTACAGTTGGGGCTCT  47
      |||||   ||||| ||||||||| |||||| ||||||||| | |||||||
seq2  AAAATGAATCCAC-AAGCTGTAG-TTCATG-AATCTACAG-TCGGGCTCT  46

seq1  ACTGATCAACACATAAAATGAGACAATTTAGAAGACATCTAGTTATTTCC  97
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  ACTGATCAACACATAAAATGAGAC-ATTTAGAAGACATCTAGTTATTTCC  95

seq1  CTTTATTCAACGCTGACAGTACACTCTACCATATAAAATAGTAAATGTTC  147
      |||||||| |||||||||||||||||||||||||||||||||||||| ||
seq2  CTTTATTC-ACGCTGACAGTACACTCTACCATATAAAATAGTAAATG-TC  143

seq1  TATGATTTTGCATGCTGAGCATTCTGTAGAGCATTTTCCATATGAAAAAT  197
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  TATGATTTTGCATGCTGAGCA-TCTGTAGAGCATTTTCCATATGAAAAAT  192

seq1  ATTTTTTACACTTA-GGTTGAGTAAAACTACCTACTAATGCCATCAAAAA  246
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  ATTTTTTACACTTAGGGTTGAGTAAAACTACCTACTAATGCCATCAAAAA  242

seq1  TGTTGTAT-CCAACTTTATTCCTCACGATACTTTAGAGGATTTGGGGAAG  295
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGTATCCCAACTTTATTCCTCACGATACTTTAGAGGATTTGGGGAAG  292

seq1  GTATTGACCCTTCCCAAAATGCTATTCTTTCTTGAAAGTTCTTAGTATTT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGACCCTTCCCAAAATGCTATTCTTTCTTGAAAGTTCTTAGTATTT  342

seq1  TCTTTCTAATGACATTTAATCTAATCTTACCATATTTTAAGAAAGCTGCA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTAATGACATTTAATCTAATCTTACCATATTTTAAGAAAGCTGCA  392

seq1  TTTTGTAATATAAATCTCAAACACAAAATCCGTGAAGTGTGGGAGTTCTA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATATAAATCTCAAACACAAAATCCGTGAAGTGTGGGAGTTCTA  442

seq1  TTACACTGTCATTTTCTAGCTATAATGAGAGTTGTAGTAATCTGTAATTA  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACACTGTCATTTTCTAGCTATAATGAGAGTTGTAGTAATCTGTAATTA  492

seq1  TTGTTAATTAGTAAAACAGGAACCCATTAGTGAAATATTCTAGAACCTAT  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTAATTAGTAAAACAGGAACCCATTAGTGAAATATTCTAGAACCTAT  542

seq1  AAGAATCAATGGTTCCTAATTAAGAAGTTTCTTTAGAGAGATGATGAAAA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAATCAATGGTTCCTAATTAAGAAGTTTCTTTAGAGAGATGATGAAAA  592

seq1  AGAAAATAATCTATTATTTATTTGTTATTTTATTATCTTTTCATGGTTTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATAATCTATTATTTATTTGTTATTTTATTATCTTTTCATGGTTTC  642

seq1  TTTGTTAAAGACACACTTTTTGTTTCTTTTAATGGAACCCTGAAAGGAAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGTTAAAGACACACTTTTTGTTTCTTTTAATGGAACCCTGAAAGGAAG  692

seq1  ACTTGTACTTCTCAAAATGAGGCCATTCTCTAGGACTTTAGTTCTGTAGT  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTACTTCTCAAAATGAGGCCATTCTCTAGGACTTTAGTTCTGTAGT  742

seq1  CTCTGATGATCTCTTTGCTTCATTTTTCTGTATCTCACCATATCATATCA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGATGATCTCTTTGCTTCATTTTTCTGTATCTCACCATATCATATCA  792

seq1  ATCAAATGTGCAGTTAAGAGTTTTTGTTTGACATCAGTAACCATATCTTT  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAATGTGCAGTTAAGAGTTTTTGTTTGACATCAGTAACCATATCTTT  842

seq1  CAGCCTGCTTTAGTTCAATTTAAGACATCTTTTGTTGATTGGTTTTTTAA  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTGCTTTAGTTCAATTTAAGACATCTTTTGTTGATTGGTTTTTTAA  892

seq1  CTCTCTGAAAAACAGATCTCCTCTCATTGCTACTTGCCCATGATTGCAAG  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTGAAAAACAGATCTCCTCTCATTGCTACTTGCCCATGATTGCAAG  942

seq1  ATCATTTCTGAACCATGGCTCATTTCTATGTGTTGTGAGAACTACATGCT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATTTCTGAACCATGGCTCATTTCTATGTGTTGTGAGAACTACATGCT  992

seq1  AAATGGTGATGGGAGGATGGAAGTTTGATTAAAAACCTTAAAATGAGTGT  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGTGATGGGAGGATGGAAGTTTGATTAAAAACCTTAAAATGAGTGT  1042

seq1  ATTTTATATATTTCTGTAAGCTCACTAGTAACATCATGACTGCCTAATTT  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTATATATTTCTGTAAGCTCACTAGTAACATCATGACTGCCTAATTT  1092

seq1  TAAGAGATTGAATGAAAACATCCCCACTCTGAATTC  1131
      ||||||||||||||||||||||||||||||||||||
seq2  TAAGAGATTGAATGAAAACATCCCCACTCTGAATTC  1128


seq1: chr4_38418482_38419624
seq2: B6Ng01-223I18.g_66_1196

seq1  GAATTCCTTTACAAGGAATGCAGAGAAGCATGACGTCTGTGAGTCTGCCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCTTTACAAGGAATGCAGAGAAGCATGACGTCTGTGAGTCTGCCT  50

seq1  TGTTTATCTATCTCACAGAAAAGCAGAGTGAGAAAATGTATCTTTACCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTATCTATCTCACAGAAAAGCAGAGTGAGAAAATGTATCTTTACCCA  100

seq1  TAACATATCTTTTATCTTTCAGGGTACTTTATGAAAATTTATTTTAGTAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACATATCTTTTATCTTTCAGGGTACTTTATGAAAATTTATTTTAGTAG  150

seq1  TTGAATACACTAAGCTTTGATTATCATTTGCCTTTTTAAAACAGATTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATACACTAAGCTTTGATTATCATTTGCCTTTTTAAAACAGATTTCT  200

seq1  AGGAATTTGTACAGAGGAATTTTAATCCTGCAACCTGGCTGTTCTGGATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATTTGTACAGAGGAATTTTAATCCTGCAACCTGGCTGTTCTGGATA  250

seq1  TATTCAATCGGCTTTTAGGTTTGTGGATCTGGCTGGAGTGCAGGCAAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCAATCGGCTTTTAGGTTTGTGGATCTGGCTGGAGTGCAGGCAAACC  300

seq1  ACATTTAATCATTGTGGCTGGAACACAAATACTTTCAGTATATACCTTTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATTTAATCATTGTGGCTGGAACACAAATACTTTCAGTATATACCTTTA  350

seq1  ATGTAGAAGGAAGCAGCCATGTTTGAAATTGACATCTAACTGAGAGACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTAGAAGGAAGCAGCCATGTTTGAAATTGACATCTAACTGAGAGACAG  400

seq1  ACAAACTGAAAAATCAGAAAGATTTAACAGAATGAGTCAGAGATGGGATA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAACTGAAAAATCAGAAAGATTTAACAGAATGAGTCAGAGATGGGATA  450

seq1  AGCTCAGCTCTCATGTCGTTCAGTGCAGGTCAGAATAGACAGTTAAAGCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTCAGCTCTCATGTCGTTCAGTGCAGGTCAGAATAGACAGTTAAAGCC  500

seq1  AGAAAATTAGAAAGAACCACAAATTGAAATAAACTGCAGGAGTTAGTTTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAATTAGAAAGAACCACAAATTGAAATAAACTGCAGGAGTTAGTTTA  550

seq1  AGTCCAAGCAGTACAACTCAGCTGGGAGAAGCCAGATTGAATCAGTCAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCAAGCAGTACAACTCAGCTGGGAGAAGCCAGATTGAATCAGTCAGC  600

seq1  TTAGAGAGGAGTTTGTATCAGAACAATTGAGTTGAACCAGCCAGCCAGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGAGAGGAGTTTGTATCAGAACAATTGAGTTGAACCAGCCAGCCAGAG  650

seq1  TTCAAAAAGAACTAGAAAGAATGAGCTTATTCAGCAGAAAGTGTCTAAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAAAAGAACTAGAAAGAATGAGCTTATTCAGCAGAAAGTGTCTAAGA  700

seq1  AGCCAATTACATCAGGAGAATAAAAGCTAGATTTACATGTTTGTGTTATG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTACATCAGGAGAATAAAAGCTAGATTTACATGTTTGTGTTATG  750

seq1  TTAAAAATTAAATTTAGTAAAAAAATGATTTCTGGCATAAATTACCATGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAAAATTAAATTTAGTAAAAAAATGATTTCTGGCATAAATTACCATGA  800

seq1  AAAATAATATGGCTGTGTAATAGGTAAAAATAAGTTCATACAAATAACGG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATATGGCTGTGTAATAGGTAAAAATAAGTTCATACAAATAACGG  850

seq1  ATGACC-TTTTTTTCTTATTGTTATTTTAATGATTCTAAATTGGCATGAT  899
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACCTTTTTTTTCTTATTGTTATTTTAATGATTCTAAATTGGCATGAT  900

seq1  TACACTAGGAAACATCTGCGATTTTGAGGTTGAAAAAAGATTAAGTTAAA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACACTAGGAAACATCTGCGATTTTGAGGTTGAAAAAAGATTAAGTTAAA  950

seq1  AACAATTCCTTCTCAAGTCAAGTCATGGAGTTACCTTTTTATAACTGTAA  999
      |  | ||||||||| ||||||||||||||||||||||||||| ||||| |
seq2  ACAATTTCCTTCTC-AGTCAAGTCATGGAGTTACCTTTTTAT-ACTGT-A  997

seq1  GAAAAGTGTTAAATTCACTGAAAGTCCAGCTTTCTCCCTTTCTAGATTGA  1049
      |||||||||  || |||||| |||| |||||||||||||||||||| |||
seq2  GAAAAGTGT--AAATCACTG-AAGT-CAGCTTTCTCCCTTTCTAGA-TGA  1042

seq1  CTTTATACAATCTTACTACATGATATCCATGCATAGTAACTG-CTACTGG  1098
      |||||||| ||||   |||||||||| |||||||||| |||| ||||| |
seq2  CTTTATAC-ATCTACTTACATGATAT-CATGCATAGTTACTGCCTACT-G  1089

seq1  ATACA-GCTTGGTTCTTGTAGTAACCACATGGCTAATACTTTAGGT  1143
      ||||| || |   |  |||||||  || ||||||||| | ||||||
seq2  ATACAGGCCTATCTTGTGTAGTA--CA-ATGGCTAAT-CCTTAGGT  1131


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